Gcaud2153.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2153.t1
Unique Name	Gcaud2153.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	256

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_774_length_18304_cov_4.574150	contig	NODE_774_length_18304_cov_4.574150:16301..17068 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	430498.S8C1Z2
PFAMs	TauD
Max annot lvl	4751\|Fungi
Evalue	5.12e-18
EggNOG OGs	2CY22@1\|root,2S1E9@2759\|Eukaryota,3A2F5@33154\|Opisthokonta,3P3NX@4751\|Fungi,3QP1I@4890\|Ascomycota
Description	taurine catabolism dioxygenase
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2153	Gcaud2153	Gracilaria caudata M_176_S67 male	gene	NODE_774_length_18304_cov_4.574150 16301..17068 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2153.t1.stop1	Gcaud2153.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_774_length_18304_cov_4.574150 16301..16303 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2153.t1.CDS1	Gcaud2153.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_774_length_18304_cov_4.574150 16301..17068 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2153.t1.exon1	Gcaud2153.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_774_length_18304_cov_4.574150 16301..17068 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2153.t1.start1	Gcaud2153.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_774_length_18304_cov_4.574150 17066..17068 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2153.t1	Gcaud2153.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_774_length_18304_cov_4.574150 16301..17068 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_774_length_18304_cov_4.574150:16301..17068-
coding sequence from alignment at NODE_774_length_18304_cov_4.574150:16301..17068-

mRNA sequence

>Gcaud2153.t1 ID=Gcaud2153.t1|Name=Gcaud2153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MILSSKLLRQLVSVHPRIERILCKAPHDYIIGTVRPDVLFAEDGSLKVCE
INARFPLNGYLVTVIGNNVIHKLSLQPSLFLAKHLLSGVSSLLYFMDLNK
RHTADGVDIVWILNGKEPEHDLAALGTTLDVNVRRCKPEHFTCGEKNLGK
IYCREANECITEIRFCVIELHQDEILSLQDDVLEALASLSYRGHTLNDFR
TIFLAHDKRILALLLSEYCEVDSYTRGLLHKYITPTMFIDDRIFVLNLWK
ANHLC*

spliced messenger RNA

>Gcaud2153.t1 ID=Gcaud2153.t1|Name=Gcaud2153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:16301..17068- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACTCAGTAGCAAGCTGCTTCGCCAATTAGTTTCCGTGCATCCCAG
AATTGAACGAATTCTTTGCAAAGCTCCGCACGACTATATCATAGGAACTG
TCCGTCCTGATGTGCTTTTTGCAGAAGATGGCAGTTTGAAGGTGTGCGAA
ATCAACGCTCGATTTCCTCTGAATGGTTATCTGGTCACAGTAATTGGGAA
TAATGTCATACATAAGCTCTCCTTGCAACCATCATTGTTCTTAGCGAAAC
ATTTGCTTTCTGGGGTCAGCTCGCTTCTGTATTTCATGGATTTGAATAAG
AGACATACTGCCGACGGAGTTGACATTGTTTGGATCCTGAATGGGAAGGA
GCCCGAACACGATCTTGCCGCTCTTGGTACTACCCTCGATGTCAACGTTC
GCCGTTGCAAACCTGAGCACTTCACGTGTGGGGAAAAGAACCTGGGCAAG
ATATATTGTAGAGAAGCGAATGAATGTATAACAGAAATTCGTTTTTGTGT
AATTGAGCTTCACCAAGACGAGATTCTTTCTTTGCAAGATGATGTGTTGG
AAGCACTTGCTTCTCTATCATATCGTGGACATACGCTCAACGACTTCCGC
ACTATCTTCTTGGCCCATGACAAACGTATACTTGCCTTACTCCTTTCCGA
ATACTGTGAAGTCGACTCTTACACGCGTGGACTGTTGCACAAGTATATTA
CTCCGACAATGTTCATCGACGATCGCATCTTTGTTTTAAATTTGTGGAAG
GCAAATCACTTGTGTTGA

protein sequence of Gcaud2153.t1

>Gcaud2153.t1 ID=Gcaud2153.t1|Name=Gcaud2153.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MILSSKLLRQLVSVHPRIERILCKAPHDYIIGTVRPDVLFAEDGSLKVCE
INARFPLNGYLVTVIGNNVIHKLSLQPSLFLAKHLLSGVSSLLYFMDLNK
RHTADGVDIVWILNGKEPEHDLAALGTTLDVNVRRCKPEHFTCGEKNLGK
IYCREANECITEIRFCVIELHQDEILSLQDDVLEALASLSYRGHTLNDFR
TIFLAHDKRILALLLSEYCEVDSYTRGLLHKYITPTMFIDDRIFVLNLWK
ANHLC*

mRNA from alignment at NODE_774_length_18304_cov_4.574150:16301..17068-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2153.t1 ID=Gcaud2153.t1|Name=Gcaud2153.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:16301..17068- (Gracilaria caudata M_176_S67 male)
ATGATACTCAGTAGCAAGCTGCTTCGCCAATTAGTTTCCGTGCATCCCAG
AATTGAACGAATTCTTTGCAAAGCTCCGCACGACTATATCATAGGAACTG
TCCGTCCTGATGTGCTTTTTGCAGAAGATGGCAGTTTGAAGGTGTGCGAA
ATCAACGCTCGATTTCCTCTGAATGGTTATCTGGTCACAGTAATTGGGAA
TAATGTCATACATAAGCTCTCCTTGCAACCATCATTGTTCTTAGCGAAAC
ATTTGCTTTCTGGGGTCAGCTCGCTTCTGTATTTCATGGATTTGAATAAG
AGACATACTGCCGACGGAGTTGACATTGTTTGGATCCTGAATGGGAAGGA
GCCCGAACACGATCTTGCCGCTCTTGGTACTACCCTCGATGTCAACGTTC
GCCGTTGCAAACCTGAGCACTTCACGTGTGGGGAAAAGAACCTGGGCAAG
ATATATTGTAGAGAAGCGAATGAATGTATAACAGAAATTCGTTTTTGTGT
AATTGAGCTTCACCAAGACGAGATTCTTTCTTTGCAAGATGATGTGTTGG
AAGCACTTGCTTCTCTATCATATCGTGGACATACGCTCAACGACTTCCGC
ACTATCTTCTTGGCCCATGACAAACGTATACTTGCCTTACTCCTTTCCGA
ATACTGTGAAGTCGACTCTTACACGCGTGGACTGTTGCACAAGTATATTA
CTCCGACAATGTTCATCGACGATCGCATCTTTGTTTTAAATTTGTGGAAG
GCAAATCACTTGTGTTGA

Coding sequence (CDS) from alignment at NODE_774_length_18304_cov_4.574150:16301..17068-

>Gcaud2153.t1 ID=Gcaud2153.t1|Name=Gcaud2153.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_774_length_18304_cov_4.574150:16301..17068- (Gracilaria caudata M_176_S67 male)
ATGATACTCAGTAGCAAGCTGCTTCGCCAATTAGTTTCCGTGCATCCCAG
AATTGAACGAATTCTTTGCAAAGCTCCGCACGACTATATCATAGGAACTG
TCCGTCCTGATGTGCTTTTTGCAGAAGATGGCAGTTTGAAGGTGTGCGAA
ATCAACGCTCGATTTCCTCTGAATGGTTATCTGGTCACAGTAATTGGGAA
TAATGTCATACATAAGCTCTCCTTGCAACCATCATTGTTCTTAGCGAAAC
ATTTGCTTTCTGGGGTCAGCTCGCTTCTGTATTTCATGGATTTGAATAAG
AGACATACTGCCGACGGAGTTGACATTGTTTGGATCCTGAATGGGAAGGA
GCCCGAACACGATCTTGCCGCTCTTGGTACTACCCTCGATGTCAACGTTC
GCCGTTGCAAACCTGAGCACTTCACGTGTGGGGAAAAGAACCTGGGCAAG
ATATATTGTAGAGAAGCGAATGAATGTATAACAGAAATTCGTTTTTGTGT
AATTGAGCTTCACCAAGACGAGATTCTTTCTTTGCAAGATGATGTGTTGG
AAGCACTTGCTTCTCTATCATATCGTGGACATACGCTCAACGACTTCCGC
ACTATCTTCTTGGCCCATGACAAACGTATACTTGCCTTACTCCTTTCCGA
ATACTGTGAAGTCGACTCTTACACGCGTGGACTGTTGCACAAGTATATTA
CTCCGACAATGTTCATCGACGATCGCATCTTTGTTTTAAATTTGTGGAAG
GCAAATCACTTGTGTTGA