Gcaud2142.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2142.t1
Unique NameGcaud2142.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length738
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:33483..35757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707295.1
Preferred nameTK
PFAMsTransket_pyr,Transketolase_C,Transketolase_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00032,RC00226,RC00571,RC01560
KEGG koko:K00615,ko:K01662
KEGG ReactionR01067,R01641,R01830,R05636,R06590
KEGG Pathwayko00030,ko00710,ko00730,ko00900,ko01051,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map00730,map00900,map01051,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00096,M00165,M00167
GOsGO:0003674,GO:0003824,GO:0004802,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0016020,GO:0016740,GO:0016744,GO:0030145,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055035
Evalue4.35e-256
EggNOG OGsCOG0021@1|root,KOG0523@2759|Eukaryota
EC2.2.1.1,2.2.1.7
Descriptiontransketolase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2142Gcaud2142Gracilaria caudata M_176_S67 malegeneNODE_116_length_48691_cov_4.274671 33483..35757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1Gcaud2142.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_116_length_48691_cov_4.274671 33483..35757 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1.start1Gcaud2142.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_116_length_48691_cov_4.274671 33483..33485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1.CDS1Gcaud2142.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 33483..35016 +
Gcaud2142.t1.CDS2Gcaud2142.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 35078..35757 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1.exon1Gcaud2142.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 33483..35016 +
Gcaud2142.t1.exon2Gcaud2142.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 35078..35757 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1.intron1Gcaud2142.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_116_length_48691_cov_4.274671 35017..35077 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2142.t1.stop1Gcaud2142.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_116_length_48691_cov_4.274671 35755..35757 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=738bp
MTLPCVDSSTTTVDKDLLDRKPLLCNTSNVSLESVYPLEPSVRGSSSVSS
HEELAADECILSNYTTSEQLALANLCVNSIRFLCIDAINNASSGHPGVCM
GMAAAAFVLFDNHMKFNPSNPNWLNRDRFVLSAGHGSMLLYSLLYLCGYS
SVSLEDIKQFRQLHSTTPGHPECTETAGVEVCTGPLGQGISNAVGIAIAE
AHVASVYNRPGLPVVDNYTFCIAGDGCMMEGISAEACSLAGHLQLGKLIV
LYDDNHISIDGSTDLAFTEDVGQRFEAYGWQVIHVKDGSTDVAAIDRAII
AAKKCSNKPTLIKVSTVIGYGAPNIQNTAKAHGAALGTDETDAARRALKY
EYEPFDIPAPALEHLRRKVETGASQESSWWSILEEYKTTFPELHEQLYKQ
VTDHELSDVVTETLRKTAFSLRGKSQATRKHSKAVLNAIAPLVPNLVGGS
ADTSPSTLTDLDCSEDFTSECRTGRIIRFGVREHAMGAISNGMSLAGYNL
YPFCSTFFVFTDYMRAAMRMASLSETGTIFVMTHDSIGLGEDGPSHQPIE
HLASFRAMPNHNIWRPADGVETAAAYASALVSRECPSTIVLSRQTTNALQ
GTDFDKARRGGYVVYETANERTDGVLIATGSEVFAAVSAAKKLELDGFGV
RVVSLPCWEVFAQQGKHYRKKVINVGRELCVAVEAGSQFGWERYADWFVC
VDEFGKSGKGAEVKELMGICEDRIVERFMKMIANCEE*
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spliced messenger RNA

>Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2214bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT
TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT
CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT
CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC
GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT
GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG
GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA
TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG
GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG
TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC
ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG
GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA
GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA
CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG
CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT
CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT
CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC
ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA
GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT
GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG
CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT
GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG
AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG
AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA
GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC
AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG
CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT
GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT
CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC
ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG
TACCCTTTCTGCTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGC
AATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTTCGTTATGACTC
ATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATCAACCAATTGAG
CATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATATGGCGCCCGGC
TGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCTTGTGTCACGTG
AATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCAATGCTTTACAA
GGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTCGTTTACGAGAC
CGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGGATCGGAGGTAT
TTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATGGGTTTGGAGTA
CGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAGCAGGGAAAGCA
CTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTGCGTTGCCGTGG
AAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACTGGTTTGTGTGC
GTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTGAAAGAGCTAAT
GGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAAGATGATTGCAA
ACTGTGAGGAGTGA
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protein sequence of Gcaud2142.t1

>Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=738bp
MTLPCVDSSTTTVDKDLLDRKPLLCNTSNVSLESVYPLEPSVRGSSSVSS
HEELAADECILSNYTTSEQLALANLCVNSIRFLCIDAINNASSGHPGVCM
GMAAAAFVLFDNHMKFNPSNPNWLNRDRFVLSAGHGSMLLYSLLYLCGYS
SVSLEDIKQFRQLHSTTPGHPECTETAGVEVCTGPLGQGISNAVGIAIAE
AHVASVYNRPGLPVVDNYTFCIAGDGCMMEGISAEACSLAGHLQLGKLIV
LYDDNHISIDGSTDLAFTEDVGQRFEAYGWQVIHVKDGSTDVAAIDRAII
AAKKCSNKPTLIKVSTVIGYGAPNIQNTAKAHGAALGTDETDAARRALKY
EYEPFDIPAPALEHLRRKVETGASQESSWWSILEEYKTTFPELHEQLYKQ
VTDHELSDVVTETLRKTAFSLRGKSQATRKHSKAVLNAIAPLVPNLVGGS
ADTSPSTLTDLDCSEDFTSECRTGRIIRFGVREHAMGAISNGMSLAGYNL
YPFCSTFFVFTDYMRAAMRMASLSETGTIFVMTHDSIGLGEDGPSHQPIE
HLASFRAMPNHNIWRPADGVETAAAYASALVSRECPSTIVLSRQTTNALQ
GTDFDKARRGGYVVYETANERTDGVLIATGSEVFAAVSAAKKLELDGFGV
RVVSLPCWEVFAQQGKHYRKKVINVGRELCVAVEAGSQFGWERYADWFVC
VDEFGKSGKGAEVKELMGICEDRIVERFMKMIANCEE*
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mRNA from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2275bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male)
ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG TACCCTTTCTGCTCAACATTCTTCGTATTCACAGGTATGTCCTTCCCCGC TTGTCCATCGACTACAGTAGAAATTCTTTCTAACACACTCTTCAGACTAC ATGCGAGCTGCAATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTT CGTTATGACTCATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATC AACCAATTGAGCATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATA TGGCGCCCGGCTGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCT TGTGTCACGTGAATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCA ATGCTTTACAAGGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTC GTTTACGAGACCGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGG ATCGGAGGTATTTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATG GGTTTGGAGTACGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAG CAGGGAAAGCACTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTG CGTTGCCGTGGAAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACT GGTTTGTGTGCGTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTG AAAGAGCTAATGGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAA GATGATTGCAAACTGTGAGGAGTGA
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Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+

>Gcaud2142.t1 ID=Gcaud2142.t1|Name=Gcaud2142.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2214bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:33483..35757+ (Gracilaria caudata M_176_S67 male)
ATGACACTTCCCTGCGTAGACTCCTCTACTACCACCGTCGACAAAGACCT
TCTTGACCGCAAGCCATTGCTCTGTAACACTTCAAACGTATCATTGGAAT
CCGTCTATCCTCTTGAACCTTCTGTTAGAGGTTCATCTTCGGTCTCGTCT
CATGAGGAGCTTGCCGCGGACGAATGCATTCTGTCAAACTATACAACATC
GGAACAATTGGCGTTGGCGAACTTGTGTGTAAATTCTATTCGTTTTCTAT
GCATCGATGCCATCAATAATGCGAGCAGTGGTCACCCAGGGGTGTGCATG
GGGATGGCAGCAGCTGCGTTTGTACTTTTTGACAATCATATGAAGTTCAA
TCCTTCGAATCCCAACTGGCTCAACAGAGACAGGTTTGTTTTATCGGCAG
GGCATGGTTCTATGCTTTTGTATTCCTTACTGTACCTCTGTGGATATTCG
TCTGTGTCGCTTGAAGACATCAAACAATTTCGCCAGCTCCACTCCACCAC
ACCAGGGCACCCTGAATGCACCGAGACAGCGGGGGTCGAAGTGTGTACTG
GTCCGCTGGGACAGGGCATCTCCAATGCGGTTGGAATTGCGATTGCCGAA
GCTCACGTCGCATCTGTTTACAATCGACCCGGCTTACCAGTTGTGGATAA
CTACACCTTCTGCATAGCTGGAGATGGTTGCATGATGGAAGGAATATCTG
CAGAAGCTTGTTCTTTGGCCGGCCATTTACAGTTAGGAAAGCTCATCGTT
CTTTACGATGATAATCATATTTCCATAGATGGTTCCACAGATCTTGCCTT
CACGGAAGACGTAGGCCAGCGCTTTGAAGCTTATGGTTGGCAAGTGATCC
ACGTCAAAGACGGAAGCACGGATGTCGCTGCTATCGACAGAGCAATAATA
GCCGCCAAGAAATGCTCCAACAAACCCACTCTAATCAAAGTGAGCACTGT
GATTGGATATGGTGCGCCCAATATACAGAACACGGCAAAAGCACATGGCG
CAGCGCTTGGAACGGACGAAACAGACGCTGCTCGGAGGGCTTTGAAGTAT
GAGTATGAACCTTTTGATATTCCCGCTCCTGCCTTAGAGCATCTACGGCG
AAAGGTAGAGACCGGAGCGTCTCAAGAGTCCTCCTGGTGGTCGATTCTTG
AGGAGTACAAAACCACCTTCCCCGAACTCCATGAACAATTGTACAAGCAA
GTGACAGATCATGAACTATCAGACGTTGTAACTGAAACGTTGCGCAAGAC
AGCATTTTCGCTTCGAGGCAAGAGTCAGGCAACTCGAAAGCACTCCAAAG
CCGTTCTAAATGCAATCGCCCCGTTGGTACCGAATTTGGTAGGTGGTAGT
GCGGATACGAGCCCTTCAACATTGACAGATCTGGACTGTTCCGAAGATTT
CACCTCTGAATGCAGAACGGGAAGAATCATTCGTTTTGGCGTGCGTGAAC
ATGCAATGGGGGCGATCAGCAATGGAATGAGTCTAGCAGGATACAATTTG
TACCCTTTCTGCTCAACATTCTTCGTATTCACAGACTACATGCGAGCTGC
AATGAGAATGGCGTCTCTTAGCGAAACAGGAACTATTTTCGTTATGACTC
ATGATTCAATCGGTCTGGGAGAAGATGGCCCTTCTCATCAACCAATTGAG
CATTTAGCATCTTTCCGAGCAATGCCGAATCATAACATATGGCGCCCGGC
TGATGGGGTGGAAACTGCAGCTGCGTACGCCAGTGCGCTTGTGTCACGTG
AATGCCCGAGTACAATCGTTTTATCTAGGCAAACGACCAATGCTTTACAA
GGCACGGACTTTGATAAGGCTCGGAGAGGTGGATATGTCGTTTACGAGAC
CGCCAATGAAAGAACCGATGGCGTCTTGATCGCAACTGGATCGGAGGTAT
TTGCAGCTGTGTCTGCGGCGAAGAAACTGGAGCTGGATGGGTTTGGAGTA
CGTGTGGTTTCCCTTCCATGTTGGGAAGTATTTGCTCAGCAGGGAAAGCA
CTACCGCAAAAAGGTGATCAACGTTGGGCGAGAATTGTGCGTTGCCGTGG
AAGCTGGAAGTCAATTCGGTTGGGAAAGATACGCAGACTGGTTTGTGTGC
GTAGATGAGTTTGGAAAGAGTGGAAAAGGGGCAGAGGTGAAAGAGCTAAT
GGGTATTTGTGAAGACCGTATTGTCGAACGCTTCATGAAGATGATTGCAA
ACTGTGAGGAGTGA
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