Gcaud210.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud210.t1
Unique NameGcaud210.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length497
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4847_length_1941_cov_3.423243contigNODE_4847_length_1941_cov_3.423243:143..1633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706193.1
Preferred nameADSL
PFAMsADSL_C,Lyase_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
GOsGO:0003674,GO:0003824,GO:0004018,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009987,GO:0009991,GO:0015980,GO:0016043,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031667,GO:0034641,GO:0034654,GO:0042221,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0051259,GO:0051262,GO:0055086,GO:0055114,GO:0065003,GO:0070626,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.1e-226
EggNOG OGsCOG0015@1|root,KOG2700@2759|Eukaryota
EC4.3.2.2
Description(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud210Gcaud210Gracilaria caudata M_176_S67 malegeneNODE_4847_length_1941_cov_3.423243 143..1633 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud210.t1.stop1Gcaud210.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4847_length_1941_cov_3.423243 143..145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud210.t1.CDS1Gcaud210.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4847_length_1941_cov_3.423243 143..1633 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud210.t1.exon1Gcaud210.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4847_length_1941_cov_3.423243 143..1633 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud210.t1.start1Gcaud210.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4847_length_1941_cov_3.423243 1631..1633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud210.t1Gcaud210.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4847_length_1941_cov_3.423243 143..1633 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud210.t1 ID=Gcaud210.t1|Name=Gcaud210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp
MAGVSSEPSPPATHEARPDHELNYVSPLSTRYASAPMRHNFSDVARFRLW
RQLWIALAHAQHQLGLHITQQQLDALRAAPDVDVPLARRYEAKLRHDVMA
HVHALGDQVPAARAIIHLGATSCFVTDNSEIMQMRSALDMIIASLWRCIS
NLSRFALQHRELPTLAFTHLQPAQPTTVGKRAALWLQDLLFDAHNLEHVR
DNLRFRGVKGTTGTQASFLSLFDGDHDKVKQLDSMVTAAMGFEHAWPITG
QTYSRKQDFFVLSALAGVGQSAAKMANDIRLLQHMKELEEPFGAKQIGSS
AMAYKRNPMRCERINALSRFLQTLVLNPAETASTQWLERTLDDSANRRLA
NSEAFLCCDSILQLVLNVSDGLVVYPKMIAKHVREELPFMATESILMAAV
RAGGDRQRLHEAIRVHSMAAARRVKQHALHNDLLQRLEADALFAHVRPQL
AQLCAAEAFVGRAAQQVEEFVHAHVAPALQQRAQLLQGDCAGDVRI*
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spliced messenger RNA

>Gcaud210.t1 ID=Gcaud210.t1|Name=Gcaud210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_4847_length_1941_cov_3.423243:143..1633- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCGTGTCATCTGAGCCGTCGCCGCCCGCCACGCATGAAGCGCG
CCCCGACCACGAGTTGAACTACGTCTCGCCGCTGTCCACGCGCTACGCGT
CCGCGCCCATGCGCCACAACTTCTCGGACGTGGCGCGCTTCCGTCTATGG
CGTCAACTGTGGATCGCGCTCGCGCACGCGCAGCATCAGCTCGGACTGCA
CATCACGCAGCAGCAACTGGACGCGCTGCGAGCCGCGCCCGACGTGGACG
TGCCGCTGGCGCGGCGCTACGAGGCCAAGCTGCGCCACGACGTGATGGCG
CACGTGCACGCGCTGGGCGATCAGGTACCGGCCGCGCGCGCCATCATCCA
TCTGGGCGCCACGTCCTGTTTTGTGACCGACAACTCGGAGATCATGCAGA
TGCGCAGCGCGTTGGACATGATCATTGCGTCGTTGTGGCGATGCATCTCC
AATCTGTCGCGCTTCGCGCTGCAGCATCGCGAGCTGCCCACGCTGGCGTT
CACGCATCTGCAGCCGGCGCAGCCCACGACGGTGGGCAAGCGCGCCGCGC
TGTGGCTGCAGGACCTGTTGTTCGACGCGCACAACCTGGAGCACGTGCGC
GACAACCTCAGGTTTCGCGGCGTGAAGGGCACCACCGGCACGCAGGCGTC
GTTCCTGTCGCTGTTCGACGGCGACCACGACAAGGTGAAGCAGCTGGACA
GCATGGTGACCGCGGCGATGGGCTTCGAGCACGCGTGGCCCATCACGGGG
CAGACGTACAGCAGAAAGCAGGACTTCTTCGTGCTGAGCGCGCTGGCGGG
CGTGGGGCAGAGCGCGGCCAAAATGGCCAACGACATCCGACTACTGCAAC
ACATGAAGGAACTGGAGGAGCCGTTCGGCGCCAAGCAGATCGGCTCCAGC
GCGATGGCGTACAAACGCAACCCGATGCGCTGCGAGCGCATCAACGCGCT
GTCGCGCTTCCTGCAGACGCTGGTGCTGAACCCGGCCGAGACGGCGAGCA
CGCAGTGGTTGGAACGCACGCTGGACGACTCGGCCAACCGGCGACTGGCC
AACTCGGAGGCGTTCCTGTGCTGCGACTCCATTCTGCAGCTGGTGCTCAA
CGTGTCGGACGGGCTGGTGGTGTACCCCAAGATGATCGCCAAGCACGTGC
GCGAGGAGCTGCCGTTCATGGCCACGGAGAGCATTCTGATGGCGGCGGTG
CGCGCCGGCGGCGACCGACAGCGGCTGCACGAGGCGATCCGCGTGCACTC
GATGGCGGCGGCGCGGCGCGTCAAGCAGCACGCGCTGCACAACGACCTGC
TGCAGCGGCTGGAGGCGGACGCGCTGTTCGCGCACGTGCGGCCGCAGCTG
GCGCAGCTGTGCGCCGCGGAGGCGTTCGTGGGGCGCGCGGCGCAGCAGGT
GGAGGAGTTTGTGCACGCGCATGTGGCGCCGGCGCTGCAGCAGCGCGCGC
AGCTGCTGCAGGGCGACTGCGCGGGCGACGTGCGCATCTGA
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protein sequence of Gcaud210.t1

>Gcaud210.t1 ID=Gcaud210.t1|Name=Gcaud210.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MAGVSSEPSPPATHEARPDHELNYVSPLSTRYASAPMRHNFSDVARFRLW
RQLWIALAHAQHQLGLHITQQQLDALRAAPDVDVPLARRYEAKLRHDVMA
HVHALGDQVPAARAIIHLGATSCFVTDNSEIMQMRSALDMIIASLWRCIS
NLSRFALQHRELPTLAFTHLQPAQPTTVGKRAALWLQDLLFDAHNLEHVR
DNLRFRGVKGTTGTQASFLSLFDGDHDKVKQLDSMVTAAMGFEHAWPITG
QTYSRKQDFFVLSALAGVGQSAAKMANDIRLLQHMKELEEPFGAKQIGSS
AMAYKRNPMRCERINALSRFLQTLVLNPAETASTQWLERTLDDSANRRLA
NSEAFLCCDSILQLVLNVSDGLVVYPKMIAKHVREELPFMATESILMAAV
RAGGDRQRLHEAIRVHSMAAARRVKQHALHNDLLQRLEADALFAHVRPQL
AQLCAAEAFVGRAAQQVEEFVHAHVAPALQQRAQLLQGDCAGDVRI*
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mRNA from alignment at NODE_4847_length_1941_cov_3.423243:143..1633-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud210.t1 ID=Gcaud210.t1|Name=Gcaud210.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_4847_length_1941_cov_3.423243:143..1633- (Gracilaria caudata M_176_S67 male)
ATGGCCGGCGTGTCATCTGAGCCGTCGCCGCCCGCCACGCATGAAGCGCG
CCCCGACCACGAGTTGAACTACGTCTCGCCGCTGTCCACGCGCTACGCGT
CCGCGCCCATGCGCCACAACTTCTCGGACGTGGCGCGCTTCCGTCTATGG
CGTCAACTGTGGATCGCGCTCGCGCACGCGCAGCATCAGCTCGGACTGCA
CATCACGCAGCAGCAACTGGACGCGCTGCGAGCCGCGCCCGACGTGGACG
TGCCGCTGGCGCGGCGCTACGAGGCCAAGCTGCGCCACGACGTGATGGCG
CACGTGCACGCGCTGGGCGATCAGGTACCGGCCGCGCGCGCCATCATCCA
TCTGGGCGCCACGTCCTGTTTTGTGACCGACAACTCGGAGATCATGCAGA
TGCGCAGCGCGTTGGACATGATCATTGCGTCGTTGTGGCGATGCATCTCC
AATCTGTCGCGCTTCGCGCTGCAGCATCGCGAGCTGCCCACGCTGGCGTT
CACGCATCTGCAGCCGGCGCAGCCCACGACGGTGGGCAAGCGCGCCGCGC
TGTGGCTGCAGGACCTGTTGTTCGACGCGCACAACCTGGAGCACGTGCGC
GACAACCTCAGGTTTCGCGGCGTGAAGGGCACCACCGGCACGCAGGCGTC
GTTCCTGTCGCTGTTCGACGGCGACCACGACAAGGTGAAGCAGCTGGACA
GCATGGTGACCGCGGCGATGGGCTTCGAGCACGCGTGGCCCATCACGGGG
CAGACGTACAGCAGAAAGCAGGACTTCTTCGTGCTGAGCGCGCTGGCGGG
CGTGGGGCAGAGCGCGGCCAAAATGGCCAACGACATCCGACTACTGCAAC
ACATGAAGGAACTGGAGGAGCCGTTCGGCGCCAAGCAGATCGGCTCCAGC
GCGATGGCGTACAAACGCAACCCGATGCGCTGCGAGCGCATCAACGCGCT
GTCGCGCTTCCTGCAGACGCTGGTGCTGAACCCGGCCGAGACGGCGAGCA
CGCAGTGGTTGGAACGCACGCTGGACGACTCGGCCAACCGGCGACTGGCC
AACTCGGAGGCGTTCCTGTGCTGCGACTCCATTCTGCAGCTGGTGCTCAA
CGTGTCGGACGGGCTGGTGGTGTACCCCAAGATGATCGCCAAGCACGTGC
GCGAGGAGCTGCCGTTCATGGCCACGGAGAGCATTCTGATGGCGGCGGTG
CGCGCCGGCGGCGACCGACAGCGGCTGCACGAGGCGATCCGCGTGCACTC
GATGGCGGCGGCGCGGCGCGTCAAGCAGCACGCGCTGCACAACGACCTGC
TGCAGCGGCTGGAGGCGGACGCGCTGTTCGCGCACGTGCGGCCGCAGCTG
GCGCAGCTGTGCGCCGCGGAGGCGTTCGTGGGGCGCGCGGCGCAGCAGGT
GGAGGAGTTTGTGCACGCGCATGTGGCGCCGGCGCTGCAGCAGCGCGCGC
AGCTGCTGCAGGGCGACTGCGCGGGCGACGTGCGCATCTGA
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Coding sequence (CDS) from alignment at NODE_4847_length_1941_cov_3.423243:143..1633-

>Gcaud210.t1 ID=Gcaud210.t1|Name=Gcaud210.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1491bp|location=Sequence derived from alignment at NODE_4847_length_1941_cov_3.423243:143..1633- (Gracilaria caudata M_176_S67 male)
ATGGCCGGCGTGTCATCTGAGCCGTCGCCGCCCGCCACGCATGAAGCGCG
CCCCGACCACGAGTTGAACTACGTCTCGCCGCTGTCCACGCGCTACGCGT
CCGCGCCCATGCGCCACAACTTCTCGGACGTGGCGCGCTTCCGTCTATGG
CGTCAACTGTGGATCGCGCTCGCGCACGCGCAGCATCAGCTCGGACTGCA
CATCACGCAGCAGCAACTGGACGCGCTGCGAGCCGCGCCCGACGTGGACG
TGCCGCTGGCGCGGCGCTACGAGGCCAAGCTGCGCCACGACGTGATGGCG
CACGTGCACGCGCTGGGCGATCAGGTACCGGCCGCGCGCGCCATCATCCA
TCTGGGCGCCACGTCCTGTTTTGTGACCGACAACTCGGAGATCATGCAGA
TGCGCAGCGCGTTGGACATGATCATTGCGTCGTTGTGGCGATGCATCTCC
AATCTGTCGCGCTTCGCGCTGCAGCATCGCGAGCTGCCCACGCTGGCGTT
CACGCATCTGCAGCCGGCGCAGCCCACGACGGTGGGCAAGCGCGCCGCGC
TGTGGCTGCAGGACCTGTTGTTCGACGCGCACAACCTGGAGCACGTGCGC
GACAACCTCAGGTTTCGCGGCGTGAAGGGCACCACCGGCACGCAGGCGTC
GTTCCTGTCGCTGTTCGACGGCGACCACGACAAGGTGAAGCAGCTGGACA
GCATGGTGACCGCGGCGATGGGCTTCGAGCACGCGTGGCCCATCACGGGG
CAGACGTACAGCAGAAAGCAGGACTTCTTCGTGCTGAGCGCGCTGGCGGG
CGTGGGGCAGAGCGCGGCCAAAATGGCCAACGACATCCGACTACTGCAAC
ACATGAAGGAACTGGAGGAGCCGTTCGGCGCCAAGCAGATCGGCTCCAGC
GCGATGGCGTACAAACGCAACCCGATGCGCTGCGAGCGCATCAACGCGCT
GTCGCGCTTCCTGCAGACGCTGGTGCTGAACCCGGCCGAGACGGCGAGCA
CGCAGTGGTTGGAACGCACGCTGGACGACTCGGCCAACCGGCGACTGGCC
AACTCGGAGGCGTTCCTGTGCTGCGACTCCATTCTGCAGCTGGTGCTCAA
CGTGTCGGACGGGCTGGTGGTGTACCCCAAGATGATCGCCAAGCACGTGC
GCGAGGAGCTGCCGTTCATGGCCACGGAGAGCATTCTGATGGCGGCGGTG
CGCGCCGGCGGCGACCGACAGCGGCTGCACGAGGCGATCCGCGTGCACTC
GATGGCGGCGGCGCGGCGCGTCAAGCAGCACGCGCTGCACAACGACCTGC
TGCAGCGGCTGGAGGCGGACGCGCTGTTCGCGCACGTGCGGCCGCAGCTG
GCGCAGCTGTGCGCCGCGGAGGCGTTCGTGGGGCGCGCGGCGCAGCAGGT
GGAGGAGTTTGTGCACGCGCATGTGGCGCCGGCGCTGCAGCAGCGCGCGC
AGCTGCTGCAGGGCGACTGCGCGGGCGACGTGCGCATCTGA
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