Gcaud2095.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2095.t1
Unique NameGcaud2095.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_781_length_18128_cov_4.694018contigNODE_781_length_18128_cov_4.694018:14562..15014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2095Gcaud2095Gracilaria caudata M_176_S67 malegeneNODE_781_length_18128_cov_4.694018 14562..15014 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2095.t1.start1Gcaud2095.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_781_length_18128_cov_4.694018 14562..14564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2095.t1.CDS1Gcaud2095.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_781_length_18128_cov_4.694018 14562..15014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2095.t1.exon1Gcaud2095.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_781_length_18128_cov_4.694018 14562..15014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2095.t1.stop1Gcaud2095.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_781_length_18128_cov_4.694018 15012..15014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2095.t1Gcaud2095.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_781_length_18128_cov_4.694018 14562..15014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2095.t1 ID=Gcaud2095.t1|Name=Gcaud2095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=151bp
MVISTSPFRRLVFRQFCQKPELTPGILSFSKKAKQLREWARNGVIHSDMS
KRPPWTRQLELQRKELNKRKEKILKEQQTLNSFYKELGFDTLPRNHELPR
EWEQKIGRLRKAAEKIKQKQQLRSKKAPGNAKSAEETKPLPTALGQPDVT
*
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spliced messenger RNA

>Gcaud2095.t1 ID=Gcaud2095.t1|Name=Gcaud2095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:14562..15014+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATTTCTACCTCGCCATTTCGCCGACTCGTGTTTCGACAGTTCTG
CCAGAAGCCGGAGCTGACTCCGGGAATATTGAGTTTCTCCAAGAAAGCAA
AACAGTTGCGGGAATGGGCTCGCAACGGTGTAATTCATTCTGATATGAGT
AAGCGTCCACCATGGACTCGGCAACTTGAGCTGCAGAGGAAGGAACTTAA
TAAGAGAAAGGAGAAGATTCTGAAGGAACAACAAACGCTAAACTCATTTT
ACAAGGAACTTGGTTTCGACACTCTTCCCCGAAATCATGAATTGCCCCGT
GAGTGGGAGCAGAAGATTGGTAGACTCCGCAAAGCCGCCGAGAAGATAAA
GCAAAAACAACAACTTCGTTCGAAGAAGGCCCCTGGTAATGCCAAGTCCG
CAGAGGAAACGAAGCCATTGCCCACAGCGCTGGGGCAACCAGATGTGACT
TGA
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protein sequence of Gcaud2095.t1

>Gcaud2095.t1 ID=Gcaud2095.t1|Name=Gcaud2095.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=151bp
MVISTSPFRRLVFRQFCQKPELTPGILSFSKKAKQLREWARNGVIHSDMS
KRPPWTRQLELQRKELNKRKEKILKEQQTLNSFYKELGFDTLPRNHELPR
EWEQKIGRLRKAAEKIKQKQQLRSKKAPGNAKSAEETKPLPTALGQPDVT
*
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mRNA from alignment at NODE_781_length_18128_cov_4.694018:14562..15014+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2095.t1 ID=Gcaud2095.t1|Name=Gcaud2095.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=453bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:14562..15014+ (Gracilaria caudata M_176_S67 male)
ATGGTCATTTCTACCTCGCCATTTCGCCGACTCGTGTTTCGACAGTTCTG
CCAGAAGCCGGAGCTGACTCCGGGAATATTGAGTTTCTCCAAGAAAGCAA
AACAGTTGCGGGAATGGGCTCGCAACGGTGTAATTCATTCTGATATGAGT
AAGCGTCCACCATGGACTCGGCAACTTGAGCTGCAGAGGAAGGAACTTAA
TAAGAGAAAGGAGAAGATTCTGAAGGAACAACAAACGCTAAACTCATTTT
ACAAGGAACTTGGTTTCGACACTCTTCCCCGAAATCATGAATTGCCCCGT
GAGTGGGAGCAGAAGATTGGTAGACTCCGCAAAGCCGCCGAGAAGATAAA
GCAAAAACAACAACTTCGTTCGAAGAAGGCCCCTGGTAATGCCAAGTCCG
CAGAGGAAACGAAGCCATTGCCCACAGCGCTGGGGCAACCAGATGTGACT
TGA
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Coding sequence (CDS) from alignment at NODE_781_length_18128_cov_4.694018:14562..15014+

>Gcaud2095.t1 ID=Gcaud2095.t1|Name=Gcaud2095.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=453bp|location=Sequence derived from alignment at NODE_781_length_18128_cov_4.694018:14562..15014+ (Gracilaria caudata M_176_S67 male)
ATGGTCATTTCTACCTCGCCATTTCGCCGACTCGTGTTTCGACAGTTCTG
CCAGAAGCCGGAGCTGACTCCGGGAATATTGAGTTTCTCCAAGAAAGCAA
AACAGTTGCGGGAATGGGCTCGCAACGGTGTAATTCATTCTGATATGAGT
AAGCGTCCACCATGGACTCGGCAACTTGAGCTGCAGAGGAAGGAACTTAA
TAAGAGAAAGGAGAAGATTCTGAAGGAACAACAAACGCTAAACTCATTTT
ACAAGGAACTTGGTTTCGACACTCTTCCCCGAAATCATGAATTGCCCCGT
GAGTGGGAGCAGAAGATTGGTAGACTCCGCAAAGCCGCCGAGAAGATAAA
GCAAAAACAACAACTTCGTTCGAAGAAGGCCCCTGGTAATGCCAAGTCCG
CAGAGGAAACGAAGCCATTGCCCACAGCGCTGGGGCAACCAGATGTGACT
TGA
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