Gcaud2054.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2054.t1
Unique NameGcaud2054.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2400_length_5803_cov_214.791842contigNODE_2400_length_5803_cov_214.791842:4497..5738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thapsdraft1563
Preferred nameatpB
PFAMsATP-synt_ab,ATP-synt_ab_N
Max annot lvl2836|Bacillariophyta
KEGG koko:K02112
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Evalue2.62e-254
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota,2XE2T@2836|Bacillariophyta
EC3.6.3.14
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2054Gcaud2054Gracilaria caudata M_176_S67 malegeneNODE_2400_length_5803_cov_214.791842 4497..5738 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2054.t1.stop1Gcaud2054.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2400_length_5803_cov_214.791842 4497..4499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2054.t1.CDS1Gcaud2054.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2400_length_5803_cov_214.791842 4497..5738 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2054.t1.exon1Gcaud2054.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2400_length_5803_cov_214.791842 4497..5738 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2054.t1.start1Gcaud2054.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2400_length_5803_cov_214.791842 5736..5738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2054.t1Gcaud2054.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2400_length_5803_cov_214.791842 4497..5738 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2054.t1 ID=Gcaud2054.t1|Name=Gcaud2054.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp
MSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGEPVDNLGNIKSED
SLPIHRAAPSFTQLETKPSIFETGIKVVDLLAPYRKGGKIGLFGGAGVGK
TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKESKVINADDLK
ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRF
VQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTDGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPLGSTSTMLQPS
IVGQKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDRLTVARARKIE
RFLSQPFFVAEVFTGSPGKYVSLEESIKGFNMILGGELDDLPEQAFYLVG
NIEEAISKAEKLK*
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spliced messenger RNA

>Gcaud2054.t1 ID=Gcaud2054.t1|Name=Gcaud2054.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:4497..5738- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCTACTGAAGGTTTAAAAAGAGGTATAGAAGTGACTGATACAGG
AGCTCCTATTACAGTCCCTGTTGGCATACCAACACTAGGTAGAATTTTTA
ATGTACTTGGTGAACCTGTTGACAACTTGGGAAACATTAAATCTGAAGAC
TCACTACCAATACATAGAGCAGCTCCTTCATTTACTCAATTAGAAACAAA
ACCATCTATATTCGAAACAGGTATTAAAGTTGTAGATTTACTTGCACCTT
ATAGGAAAGGAGGTAAAATCGGATTATTTGGTGGAGCTGGTGTTGGAAAA
ACTGTATTAATTATGGAATTAATTAATAATATCGCAAAAGCACATGGTGG
TGTATCAGTATTTGGAGGGGTTGGTGAAAGAACAAGAGAAGGTAATGATT
TATATGAGGAAATGAAAGAATCAAAAGTTATTAATGCAGATGACTTAAAA
GAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAGCCACCAGGAGC
AAGAATGCGCGTAGGTTTAACAGCATTAACGATGGCAGAATATTTTCGAG
ATATTAACAAACAAGACGTATTATTATTTATAGACAATATTTTTCGATTT
GTACAAGCTGGTTCAGAAGTTTCAGCCTTATTAGGGCGCATGCCATCTGC
TGTTGGTTACCAACCAACATTAGCAACAGAAATGGGAACTTTACAAGAAC
GCATTACATCTACAACAGACGGGTCTATTACATCAATACAAGCTGTATAC
GTTCCTGCAGATGATTTAACTGATCCAGCTCCGGCAACAACATTTGCACA
TTTAGATGCAACAACTGTATTATCAAGAAGTTTAGCCGCTAAAGGAATCT
ACCCTGCAGTAGATCCATTAGGATCTACATCAACCATGTTGCAGCCATCG
ATAGTAGGACAAAAGCACTACTCTACAGCACAACAAATCAAGTCAACTTT
ACAAAGATATAAAGAATTACAAGATATTATAGCTATATTAGGTCTTGACG
AATTATCAGAAGATGACAGATTAACCGTTGCTAGAGCAAGAAAAATAGAA
AGATTTTTATCACAACCATTTTTTGTTGCAGAAGTATTTACAGGATCTCC
AGGAAAATATGTATCATTAGAGGAATCTATAAAAGGATTTAACATGATAT
TAGGTGGAGAATTAGATGACTTACCTGAACAAGCTTTTTACTTAGTAGGA
AACATAGAAGAAGCTATAAGTAAAGCAGAAAAGTTAAAATAA
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protein sequence of Gcaud2054.t1

>Gcaud2054.t1 ID=Gcaud2054.t1|Name=Gcaud2054.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=414bp
MSSTEGLKRGIEVTDTGAPITVPVGIPTLGRIFNVLGEPVDNLGNIKSED
SLPIHRAAPSFTQLETKPSIFETGIKVVDLLAPYRKGGKIGLFGGAGVGK
TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKESKVINADDLK
ESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRF
VQAGSEVSALLGRMPSAVGYQPTLATEMGTLQERITSTTDGSITSIQAVY
VPADDLTDPAPATTFAHLDATTVLSRSLAAKGIYPAVDPLGSTSTMLQPS
IVGQKHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDRLTVARARKIE
RFLSQPFFVAEVFTGSPGKYVSLEESIKGFNMILGGELDDLPEQAFYLVG
NIEEAISKAEKLK*
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mRNA from alignment at NODE_2400_length_5803_cov_214.791842:4497..5738-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2054.t1 ID=Gcaud2054.t1|Name=Gcaud2054.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:4497..5738- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTACTGAAGGTTTAAAAAGAGGTATAGAAGTGACTGATACAGG
AGCTCCTATTACAGTCCCTGTTGGCATACCAACACTAGGTAGAATTTTTA
ATGTACTTGGTGAACCTGTTGACAACTTGGGAAACATTAAATCTGAAGAC
TCACTACCAATACATAGAGCAGCTCCTTCATTTACTCAATTAGAAACAAA
ACCATCTATATTCGAAACAGGTATTAAAGTTGTAGATTTACTTGCACCTT
ATAGGAAAGGAGGTAAAATCGGATTATTTGGTGGAGCTGGTGTTGGAAAA
ACTGTATTAATTATGGAATTAATTAATAATATCGCAAAAGCACATGGTGG
TGTATCAGTATTTGGAGGGGTTGGTGAAAGAACAAGAGAAGGTAATGATT
TATATGAGGAAATGAAAGAATCAAAAGTTATTAATGCAGATGACTTAAAA
GAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAGCCACCAGGAGC
AAGAATGCGCGTAGGTTTAACAGCATTAACGATGGCAGAATATTTTCGAG
ATATTAACAAACAAGACGTATTATTATTTATAGACAATATTTTTCGATTT
GTACAAGCTGGTTCAGAAGTTTCAGCCTTATTAGGGCGCATGCCATCTGC
TGTTGGTTACCAACCAACATTAGCAACAGAAATGGGAACTTTACAAGAAC
GCATTACATCTACAACAGACGGGTCTATTACATCAATACAAGCTGTATAC
GTTCCTGCAGATGATTTAACTGATCCAGCTCCGGCAACAACATTTGCACA
TTTAGATGCAACAACTGTATTATCAAGAAGTTTAGCCGCTAAAGGAATCT
ACCCTGCAGTAGATCCATTAGGATCTACATCAACCATGTTGCAGCCATCG
ATAGTAGGACAAAAGCACTACTCTACAGCACAACAAATCAAGTCAACTTT
ACAAAGATATAAAGAATTACAAGATATTATAGCTATATTAGGTCTTGACG
AATTATCAGAAGATGACAGATTAACCGTTGCTAGAGCAAGAAAAATAGAA
AGATTTTTATCACAACCATTTTTTGTTGCAGAAGTATTTACAGGATCTCC
AGGAAAATATGTATCATTAGAGGAATCTATAAAAGGATTTAACATGATAT
TAGGTGGAGAATTAGATGACTTACCTGAACAAGCTTTTTACTTAGTAGGA
AACATAGAAGAAGCTATAAGTAAAGCAGAAAAGTTAAAATAA
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Coding sequence (CDS) from alignment at NODE_2400_length_5803_cov_214.791842:4497..5738-

>Gcaud2054.t1 ID=Gcaud2054.t1|Name=Gcaud2054.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1242bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:4497..5738- (Gracilaria caudata M_176_S67 male)
ATGAGTTCTACTGAAGGTTTAAAAAGAGGTATAGAAGTGACTGATACAGG
AGCTCCTATTACAGTCCCTGTTGGCATACCAACACTAGGTAGAATTTTTA
ATGTACTTGGTGAACCTGTTGACAACTTGGGAAACATTAAATCTGAAGAC
TCACTACCAATACATAGAGCAGCTCCTTCATTTACTCAATTAGAAACAAA
ACCATCTATATTCGAAACAGGTATTAAAGTTGTAGATTTACTTGCACCTT
ATAGGAAAGGAGGTAAAATCGGATTATTTGGTGGAGCTGGTGTTGGAAAA
ACTGTATTAATTATGGAATTAATTAATAATATCGCAAAAGCACATGGTGG
TGTATCAGTATTTGGAGGGGTTGGTGAAAGAACAAGAGAAGGTAATGATT
TATATGAGGAAATGAAAGAATCAAAAGTTATTAATGCAGATGACTTAAAA
GAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAGCCACCAGGAGC
AAGAATGCGCGTAGGTTTAACAGCATTAACGATGGCAGAATATTTTCGAG
ATATTAACAAACAAGACGTATTATTATTTATAGACAATATTTTTCGATTT
GTACAAGCTGGTTCAGAAGTTTCAGCCTTATTAGGGCGCATGCCATCTGC
TGTTGGTTACCAACCAACATTAGCAACAGAAATGGGAACTTTACAAGAAC
GCATTACATCTACAACAGACGGGTCTATTACATCAATACAAGCTGTATAC
GTTCCTGCAGATGATTTAACTGATCCAGCTCCGGCAACAACATTTGCACA
TTTAGATGCAACAACTGTATTATCAAGAAGTTTAGCCGCTAAAGGAATCT
ACCCTGCAGTAGATCCATTAGGATCTACATCAACCATGTTGCAGCCATCG
ATAGTAGGACAAAAGCACTACTCTACAGCACAACAAATCAAGTCAACTTT
ACAAAGATATAAAGAATTACAAGATATTATAGCTATATTAGGTCTTGACG
AATTATCAGAAGATGACAGATTAACCGTTGCTAGAGCAAGAAAAATAGAA
AGATTTTTATCACAACCATTTTTTGTTGCAGAAGTATTTACAGGATCTCC
AGGAAAATATGTATCATTAGAGGAATCTATAAAAGGATTTAACATGATAT
TAGGTGGAGAATTAGATGACTTACCTGAACAAGCTTTTTACTTAGTAGGA
AACATAGAAGAAGCTATAAGTAAAGCAGAAAAGTTAAAATAA
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