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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1173026.Glo7428_1057 |
| Preferred name | apcE |
| PFAMs | PBS_linker_poly,Phycobilisome |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K02096 |
| KEGG Pathway | ko00196,ko01100,map00196,map01100 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0009579,GO:0016020,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464 |
| Evalue | 4.95e-242 |
| EggNOG OGs | COG0237@1|root,COG0448@1|root,COG0237@2|Bacteria,COG0448@2|Bacteria,1G0CU@1117|Cyanobacteria |
| Description | Belongs to the phycobilisome linker protein family |
| COG category | GH |
| BRITE | ko00000,ko00001,ko00194 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2053.t1.start1 | Gcaud2053.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_2400_length_5803_cov_214.791842 242..244 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2053.t1.intron1 | Gcaud2053.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_2400_length_5803_cov_214.791842 2130..2945 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2053.t1.stop1 | Gcaud2053.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2400_length_5803_cov_214.791842 3455..3457 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2053.t1 ID=Gcaud2053.t1|Name=Gcaud2053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=800bp MSAIIQAEQQDRFLQLGELDELITFLNSGNKRLEVADILTKNANILVSKA ADKIFVGGSPISYLERPQASFLAMDKLNNQINPQSLSGNIQNNLVGIVAS TFNTSDSLPAGFKPISIVRYGTSRMKKSLRDLDWFLRYLTYAIVAGDPNI LSVNIRGLRDLIDNACSSAAAIVALREMRKIALSIFNEDIKGQELLKEYF DIIISEFDQSALTDKIRRRTSGDLQGLRLPQIYTKSSILKQRFVMKTSLS SEEKGNVIKACYRQIFQRDISKAYGLNFKDLESQVKNGSLSIKEFIRCIG KSYIYRKQFVQPFVNSRVVELAFRHFLGRGISSLEEFQKYFAVLSSRGLD GLIDNMINSTEYADYFGEETVPYLRSLGEEAQEARNWGAQIDLLKYSTAF RKIPQFVTLFSDYKSNLPDQHPYGLSNDPLLIQFGAIFAKNRVNLRKKSS PFGKDTRRILPRSGPGIYSQISSPNLRSKVSGSLGPKTFQLNPSPLDNNI EQVIKAVYLRVFGRFIYQAEQVVIKKFEDLFKDRQISVREFISELTKSSV FRSLYWDNLYICKAIEYIHNRLIGRPTYGRQEINKYFDIAYKQGYYKMID ALMNSLEYIETFGDNIVPYERYITPSELANYSIIGVLLMSIITKSIVNAD AEARYLSPGELDRIKSFVLSGQRRLRIAQILTDNRELIVKQGGQQLFQKR PDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVAGDVTPIEEIGLVGV KEMYNSLGTPISGVAEGVRSMKNVACSLLSGEDSAEAGFYFDYTLGAMQ* back to topspliced messenger RNA >Gcaud2053.t1 ID=Gcaud2053.t1|Name=Gcaud2053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2400bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:242..3457+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGCGATAATACAAGCGGAACAGCAGGATCGTTTTTTGCAGTTAGG TGAACTTGATGAACTTATCACATTTTTAAACTCAGGCAATAAACGTTTAG AAGTAGCTGATATATTAACAAAAAATGCTAATATATTAGTTTCTAAAGCT GCCGATAAAATATTCGTGGGAGGATCACCTATTTCTTATTTAGAAAGACC ACAGGCATCATTTTTAGCGATGGATAAATTAAATAATCAGATAAACCCAC AAAGTTTATCGGGTAATATTCAAAACAATTTAGTAGGAATAGTTGCATCT ACTTTTAATACAAGTGATTCTTTACCAGCAGGTTTCAAACCTATTAGTAT CGTACGTTATGGAACCAGTCGTATGAAAAAATCCTTGCGAGATTTAGATT GGTTTTTAAGATATTTGACCTATGCTATTGTTGCAGGGGATCCCAATATT TTGTCTGTTAATATTAGAGGTTTGAGAGACTTAATTGATAATGCATGTTC TAGTGCTGCAGCAATCGTAGCACTACGAGAAATGCGTAAAATCGCATTAA GTATTTTTAATGAAGATATTAAAGGACAAGAGTTATTAAAAGAATATTTT GATATTATTATTTCAGAGTTTGACCAATCTGCTTTAACTGATAAAATACG TAGAAGGACTTCTGGTGATTTACAAGGTTTACGATTACCTCAAATATATA CTAAATCCAGTATTCTTAAGCAGCGTTTTGTTATGAAAACAAGTTTATCT TCAGAAGAAAAAGGTAATGTTATTAAAGCTTGTTATAGACAAATTTTTCA AAGAGATATTTCGAAAGCATATGGATTAAATTTCAAAGATTTGGAATCTC AAGTTAAGAATGGTTCTTTATCAATTAAAGAATTTATCCGTTGTATAGGA AAATCGTATATTTATCGTAAACAATTTGTTCAGCCTTTTGTTAATAGTCG TGTTGTTGAATTAGCATTTAGACATTTTTTAGGTAGAGGCATAAGTTCCT TAGAAGAATTTCAGAAATACTTTGCTGTTTTATCTTCTCGAGGTTTAGAT GGTCTAATAGATAATATGATTAATAGTACTGAATACGCAGATTATTTTGG TGAAGAAACAGTTCCTTATTTACGTAGCTTAGGAGAAGAAGCGCAGGAAG CACGTAATTGGGGTGCTCAGATTGACTTATTGAAATATAGTACAGCTTTT CGGAAAATACCTCAGTTTGTAACGTTATTTAGTGATTATAAATCTAATCT TCCGGATCAACATCCTTATGGTCTTAGTAATGATCCATTGTTAATACAAT TTGGTGCAATTTTTGCAAAAAATCGTGTTAATTTACGTAAAAAGTCATCT CCTTTTGGAAAAGATACTAGAAGAATTTTGCCTAGAAGTGGTCCTGGTAT TTATAGTCAAATTAGCAGTCCGAATTTACGTTCTAAAGTTTCAGGTTCAT TAGGACCTAAAACATTTCAATTAAATCCATCTCCTTTAGATAATAATATT GAACAAGTTATAAAAGCTGTATATTTAAGGGTTTTTGGACGTTTTATTTA TCAAGCTGAGCAAGTTGTAATCAAAAAATTTGAAGATTTGTTTAAAGATC GTCAAATTTCTGTTCGTGAATTTATTAGTGAATTAACCAAATCTTCTGTA TTTAGGTCATTATATTGGGATAATTTGTATATATGTAAAGCTATAGAGTA TATACACAATCGATTAATAGGTAGACCTACTTATGGTAGGCAAGAAATTA ATAAATATTTTGATATAGCCTATAAACAAGGTTATTATAAAATGATAGAT GCTTTAATGAATAGTCTGGAATATATTGAAACTTTTGGTGATAATATAGT TCCATATGAGCGATATATAACACCTTCTGAATTAGCTAATTATAGTATTA TTGGAGTTTTATTAATGAGTATTATTACTAAATCAATTGTTAATGCAGAT GCAGAAGCTAGGTACTTAAGTCCTGGAGAGTTAGATCGAATAAAGAGTTT TGTTTTATCTGGTCAAAGGCGTTTACGAATAGCACAAATTTTGACAGATA ATCGTGAATTAATTGTAAAGCAGGGTGGTCAACAGTTATTTCAAAAGCGT CCAGATGTAGTATCTCCTGGCGGGAATGCTTATGGAGAAGAAATGACAGC CACATGCTTGCGAGATTTAGATTATTATTTAAGATTAGTAACTTATGGTA TAGTAGCTGGTGATGTAACTCCGATAGAAGAAATAGGTTTAGTTGGAGTT AAAGAGATGTATAATTCTTTAGGAACACCTATATCTGGAGTTGCTGAAGG AGTACGTTCAATGAAAAATGTTGCTTGTTCTTTGCTTTCTGGAGAAGATT CGGCTGAGGCGGGATTTTACTTTGATTATACATTAGGTGCAATGCaataa back to topprotein sequence of Gcaud2053.t1 >Gcaud2053.t1 ID=Gcaud2053.t1|Name=Gcaud2053.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=800bp
MSAIIQAEQQDRFLQLGELDELITFLNSGNKRLEVADILTKNANILVSKA ADKIFVGGSPISYLERPQASFLAMDKLNNQINPQSLSGNIQNNLVGIVAS TFNTSDSLPAGFKPISIVRYGTSRMKKSLRDLDWFLRYLTYAIVAGDPNI LSVNIRGLRDLIDNACSSAAAIVALREMRKIALSIFNEDIKGQELLKEYF DIIISEFDQSALTDKIRRRTSGDLQGLRLPQIYTKSSILKQRFVMKTSLS SEEKGNVIKACYRQIFQRDISKAYGLNFKDLESQVKNGSLSIKEFIRCIG KSYIYRKQFVQPFVNSRVVELAFRHFLGRGISSLEEFQKYFAVLSSRGLD GLIDNMINSTEYADYFGEETVPYLRSLGEEAQEARNWGAQIDLLKYSTAF RKIPQFVTLFSDYKSNLPDQHPYGLSNDPLLIQFGAIFAKNRVNLRKKSS PFGKDTRRILPRSGPGIYSQISSPNLRSKVSGSLGPKTFQLNPSPLDNNI EQVIKAVYLRVFGRFIYQAEQVVIKKFEDLFKDRQISVREFISELTKSSV FRSLYWDNLYICKAIEYIHNRLIGRPTYGRQEINKYFDIAYKQGYYKMID ALMNSLEYIETFGDNIVPYERYITPSELANYSIIGVLLMSIITKSIVNAD AEARYLSPGELDRIKSFVLSGQRRLRIAQILTDNRELIVKQGGQQLFQKR PDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVAGDVTPIEEIGLVGV KEMYNSLGTPISGVAEGVRSMKNVACSLLSGEDSAEAGFYFDYTLGAMQ* back to topmRNA from alignment at NODE_2400_length_5803_cov_214.791842:242..3457+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2053.t1 ID=Gcaud2053.t1|Name=Gcaud2053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3216bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:242..3457+ (Gracilaria caudata M_176_S67 male) ATGTCTGCGATAATACAAGCGGAACAGCAGGATCGTTTTTTGCAGTTAGG
TGAACTTGATGAACTTATCACATTTTTAAACTCAGGCAATAAACGTTTAG
AAGTAGCTGATATATTAACAAAAAATGCTAATATATTAGTTTCTAAAGCT
GCCGATAAAATATTCGTGGGAGGATCACCTATTTCTTATTTAGAAAGACC
ACAGGCATCATTTTTAGCGATGGATAAATTAAATAATCAGATAAACCCAC
AAAGTTTATCGGGTAATATTCAAAACAATTTAGTAGGAATAGTTGCATCT
ACTTTTAATACAAGTGATTCTTTACCAGCAGGTTTCAAACCTATTAGTAT
CGTACGTTATGGAACCAGTCGTATGAAAAAATCCTTGCGAGATTTAGATT
GGTTTTTAAGATATTTGACCTATGCTATTGTTGCAGGGGATCCCAATATT
TTGTCTGTTAATATTAGAGGTTTGAGAGACTTAATTGATAATGCATGTTC
TAGTGCTGCAGCAATCGTAGCACTACGAGAAATGCGTAAAATCGCATTAA
GTATTTTTAATGAAGATATTAAAGGACAAGAGTTATTAAAAGAATATTTT
GATATTATTATTTCAGAGTTTGACCAATCTGCTTTAACTGATAAAATACG
TAGAAGGACTTCTGGTGATTTACAAGGTTTACGATTACCTCAAATATATA
CTAAATCCAGTATTCTTAAGCAGCGTTTTGTTATGAAAACAAGTTTATCT
TCAGAAGAAAAAGGTAATGTTATTAAAGCTTGTTATAGACAAATTTTTCA
AAGAGATATTTCGAAAGCATATGGATTAAATTTCAAAGATTTGGAATCTC
AAGTTAAGAATGGTTCTTTATCAATTAAAGAATTTATCCGTTGTATAGGA
AAATCGTATATTTATCGTAAACAATTTGTTCAGCCTTTTGTTAATAGTCG
TGTTGTTGAATTAGCATTTAGACATTTTTTAGGTAGAGGCATAAGTTCCT
TAGAAGAATTTCAGAAATACTTTGCTGTTTTATCTTCTCGAGGTTTAGAT
GGTCTAATAGATAATATGATTAATAGTACTGAATACGCAGATTATTTTGG
TGAAGAAACAGTTCCTTATTTACGTAGCTTAGGAGAAGAAGCGCAGGAAG
CACGTAATTGGGGTGCTCAGATTGACTTATTGAAATATAGTACAGCTTTT
CGGAAAATACCTCAGTTTGTAACGTTATTTAGTGATTATAAATCTAATCT
TCCGGATCAACATCCTTATGGTCTTAGTAATGATCCATTGTTAATACAAT
TTGGTGCAATTTTTGCAAAAAATCGTGTTAATTTACGTAAAAAGTCATCT
CCTTTTGGAAAAGATACTAGAAGAATTTTGCCTAGAAGTGGTCCTGGTAT
TTATAGTCAAATTAGCAGTCCGAATTTACGTTCTAAAGTTTCAGGTTCAT
TAGGACCTAAAACATTTCAATTAAATCCATCTCCTTTAGATAATAATATT
GAACAAGTTATAAAAGCTGTATATTTAAGGGTTTTTGGACGTTTTATTTA
TCAAGCTGAGCAAGTTGTAATCAAAAAATTTGAAGATTTGTTTAAAGATC
GTCAAATTTCTGTTCGTGAATTTATTAGTGAATTAACCAAATCTTCTGTA
TTTAGGTCATTATATTGGGATAATTTGTATATATGTAAAGCTATAGAGTA
TATACACAATCGATTAATAGGTAGACCTACTTATGGTAGGCAAGAAATTA
ATAAATATTTTGATATAGCCTATAAACAAGGTTATTATAAAATGATAGAT
GCTTTAATGAATAGTCTGGAATATATTGAAACTTTTGGTGATAATATAGT
TCCATATGAGCGATATATAACACCTTCTGAATTAGCTAGTAGAAATCTGA
GGTTAAGTAATCAAAGTTATAATATCAGTAAATTTACGCAAGTGTCTCAG
CAAATAAGATTGAATTTTCAGTTTATTCAACAAGGTGGCATTGTGAAAAA
AATTCAGCAAGGTGTTAATATAAAGAGAGATCAAAACGTAATTTTTAAAG
TTGATTCTTCAAAGTATAATATGCTTCAAGTCTTAAGAGCTGTCTATCGC
CAAATTTTTGAAAGAGATTTAAATTCTTTTATTATAGGCGATGAGTTTTT
TAATTTAGAAAAAGCATTTATCAACAGACAAATAACAGTCCAACAGTTAG
TAGAAAAATTGGGATCTTCGTCTTTATATGCTAAAGAATTTTATCAGCCA
TATCCTAACACAAAAGTTATTGAATTAGGAACAAAGCATTTTTTAGGTAG
AGCACCTAATAATCAAGCTGAGATAAGGTATTATAATCAAATTTTAGCAT
CTCAAGGATTAGCTTATTTTGTATCTGCTTTAGTTAATAGTAAAGAATAT
GATGTTATTTTTGGTATGAATACTGTTCCATATCGTCGTTTTCCAACTTT
ACCAGCTGCTAATTTTCCAAATACGGAGAAGTTGTATAATAGATTAACTA
AGCAAAATAGATCAATTATTATACCTAGTTTTATATCTATTAGTGGTAAT
CAGTAAATTCTTGTTTTTAATATAGTATATAACTTTCTTGCTTTAGTACT
TCTTAAACATCTTTTTTTTGTACTTATGAAAAAAGATGTGAAAGTGTTTT
ATAATGAAGTCTAAGTTGTAATTTAAAGTATATTTTATTGTATAAATGTT
GTAGATTATAGTATTATTGGAGTTTTATTAATGAGTATTATTACTAAATC
AATTGTTAATGCAGATGCAGAAGCTAGGTACTTAAGTCCTGGAGAGTTAG
ATCGAATAAAGAGTTTTGTTTTATCTGGTCAAAGGCGTTTACGAATAGCA
CAAATTTTGACAGATAATCGTGAATTAATTGTAAAGCAGGGTGGTCAACA
GTTATTTCAAAAGCGTCCAGATGTAGTATCTCCTGGCGGGAATGCTTATG
GAGAAGAAATGACAGCCACATGCTTGCGAGATTTAGATTATTATTTAAGA
TTAGTAACTTATGGTATAGTAGCTGGTGATGTAACTCCGATAGAAGAAAT
AGGTTTAGTTGGAGTTAAAGAGATGTATAATTCTTTAGGAACACCTATAT
CTGGAGTTGCTGAAGGAGTACGTTCAATGAAAAATGTTGCTTGTTCTTTG
CTTTCTGGAGAAGATTCGGCTGAGGCGGGATTTTACTTTGATTATACATT
AGGTGCAATGCaataa back to topCoding sequence (CDS) from alignment at NODE_2400_length_5803_cov_214.791842:242..3457+ >Gcaud2053.t1 ID=Gcaud2053.t1|Name=Gcaud2053.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2400bp|location=Sequence derived from alignment at NODE_2400_length_5803_cov_214.791842:242..3457+ (Gracilaria caudata M_176_S67 male) ATGTCTGCGATAATACAAGCGGAACAGCAGGATCGTTTTTTGCAGTTAGG TGAACTTGATGAACTTATCACATTTTTAAACTCAGGCAATAAACGTTTAG AAGTAGCTGATATATTAACAAAAAATGCTAATATATTAGTTTCTAAAGCT GCCGATAAAATATTCGTGGGAGGATCACCTATTTCTTATTTAGAAAGACC ACAGGCATCATTTTTAGCGATGGATAAATTAAATAATCAGATAAACCCAC AAAGTTTATCGGGTAATATTCAAAACAATTTAGTAGGAATAGTTGCATCT ACTTTTAATACAAGTGATTCTTTACCAGCAGGTTTCAAACCTATTAGTAT CGTACGTTATGGAACCAGTCGTATGAAAAAATCCTTGCGAGATTTAGATT GGTTTTTAAGATATTTGACCTATGCTATTGTTGCAGGGGATCCCAATATT TTGTCTGTTAATATTAGAGGTTTGAGAGACTTAATTGATAATGCATGTTC TAGTGCTGCAGCAATCGTAGCACTACGAGAAATGCGTAAAATCGCATTAA GTATTTTTAATGAAGATATTAAAGGACAAGAGTTATTAAAAGAATATTTT GATATTATTATTTCAGAGTTTGACCAATCTGCTTTAACTGATAAAATACG TAGAAGGACTTCTGGTGATTTACAAGGTTTACGATTACCTCAAATATATA CTAAATCCAGTATTCTTAAGCAGCGTTTTGTTATGAAAACAAGTTTATCT TCAGAAGAAAAAGGTAATGTTATTAAAGCTTGTTATAGACAAATTTTTCA AAGAGATATTTCGAAAGCATATGGATTAAATTTCAAAGATTTGGAATCTC AAGTTAAGAATGGTTCTTTATCAATTAAAGAATTTATCCGTTGTATAGGA AAATCGTATATTTATCGTAAACAATTTGTTCAGCCTTTTGTTAATAGTCG TGTTGTTGAATTAGCATTTAGACATTTTTTAGGTAGAGGCATAAGTTCCT TAGAAGAATTTCAGAAATACTTTGCTGTTTTATCTTCTCGAGGTTTAGAT GGTCTAATAGATAATATGATTAATAGTACTGAATACGCAGATTATTTTGG TGAAGAAACAGTTCCTTATTTACGTAGCTTAGGAGAAGAAGCGCAGGAAG CACGTAATTGGGGTGCTCAGATTGACTTATTGAAATATAGTACAGCTTTT CGGAAAATACCTCAGTTTGTAACGTTATTTAGTGATTATAAATCTAATCT TCCGGATCAACATCCTTATGGTCTTAGTAATGATCCATTGTTAATACAAT TTGGTGCAATTTTTGCAAAAAATCGTGTTAATTTACGTAAAAAGTCATCT CCTTTTGGAAAAGATACTAGAAGAATTTTGCCTAGAAGTGGTCCTGGTAT TTATAGTCAAATTAGCAGTCCGAATTTACGTTCTAAAGTTTCAGGTTCAT TAGGACCTAAAACATTTCAATTAAATCCATCTCCTTTAGATAATAATATT GAACAAGTTATAAAAGCTGTATATTTAAGGGTTTTTGGACGTTTTATTTA TCAAGCTGAGCAAGTTGTAATCAAAAAATTTGAAGATTTGTTTAAAGATC GTCAAATTTCTGTTCGTGAATTTATTAGTGAATTAACCAAATCTTCTGTA TTTAGGTCATTATATTGGGATAATTTGTATATATGTAAAGCTATAGAGTA TATACACAATCGATTAATAGGTAGACCTACTTATGGTAGGCAAGAAATTA ATAAATATTTTGATATAGCCTATAAACAAGGTTATTATAAAATGATAGAT GCTTTAATGAATAGTCTGGAATATATTGAAACTTTTGGTGATAATATAGT TCCATATGAGCGATATATAACACCTTCTGAATTAGCTAATTATAGTATTA TTGGAGTTTTATTAATGAGTATTATTACTAAATCAATTGTTAATGCAGAT GCAGAAGCTAGGTACTTAAGTCCTGGAGAGTTAGATCGAATAAAGAGTTT TGTTTTATCTGGTCAAAGGCGTTTACGAATAGCACAAATTTTGACAGATA ATCGTGAATTAATTGTAAAGCAGGGTGGTCAACAGTTATTTCAAAAGCGT CCAGATGTAGTATCTCCTGGCGGGAATGCTTATGGAGAAGAAATGACAGC CACATGCTTGCGAGATTTAGATTATTATTTAAGATTAGTAACTTATGGTA TAGTAGCTGGTGATGTAACTCCGATAGAAGAAATAGGTTTAGTTGGAGTT AAAGAGATGTATAATTCTTTAGGAACACCTATATCTGGAGTTGCTGAAGG AGTACGTTCAATGAAAAATGTTGCTTGTTCTTTGCTTTCTGGAGAAGATT CGGCTGAGGCGGGATTTTACTTTGATTATACATTAGGTGCAATGCaataa back to top
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