Gcaud2026.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2026.t1
Unique Name	Gcaud2026.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	796

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_538_length_22627_cov_4.365637	contig	NODE_538_length_22627_cov_4.365637:7111..9498 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX46922
PFAMs	BACK,BTB,RCC1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11494
Evalue	4.34e-22
EggNOG OGs	COG5184@1\|root,KOG1426@2759\|Eukaryota
Description	guanyl-nucleotide exchange factor activity
COG category	DZ
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2026	Gcaud2026	Gracilaria caudata M_176_S67 male	gene	NODE_538_length_22627_cov_4.365637 7111..9498 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2026.t1.start1	Gcaud2026.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_538_length_22627_cov_4.365637 7111..7113 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2026.t1.CDS1	Gcaud2026.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_538_length_22627_cov_4.365637 7111..9498 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2026.t1.exon1	Gcaud2026.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_538_length_22627_cov_4.365637 7111..9498 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2026.t1.stop1	Gcaud2026.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_538_length_22627_cov_4.365637 9496..9498 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2026.t1	Gcaud2026.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_538_length_22627_cov_4.365637 7111..9498 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+
coding sequence from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+

mRNA sequence

>Gcaud2026.t1 ID=Gcaud2026.t1|Name=Gcaud2026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=796bp
MQPAEQFGLAALEVFYPSPSSYSLPQGPVSCPFGIRAFAAGFNFALLVDN
YYRLHSWGYNSEFQRLGRPLPYDYTEVEPTHVPISDVSAVVDCSSGANHS
VILTDDGRVYSFGCDDYGQLGRLNSHPHPALVPLPARIVQVQSGWNFNVA
LADDRRSIFTWGSGKDGQLGHGYFPERSYPTRVQLQGSALCIAVGHSHIA
VLLETEPNMRSVLTWGADGLASTRQDLPRPVPRLPESDVEYISAGKQFTI
FLTREGLVFAAGHGDEGQLGVEDRQGRNYACVVPALLGHHIVNVAASTSF
AVALSSEGSFFVWGSGIVGPKRLREGFFSFSSSFPNSFAVRMKAFGSISM
IAAPTALPPNAPLRPFRGFLKSFCEGRVLNGLRTTRVHYSCSCPVRTWGQ
CNQCCTHAYGHLLATGSNVIRSRLESHQYLDLSMFDKDCVVRSVKLICSG
VVDEDATLETLQEMSALLRRYEAHAFERIVADIMSRRLLRRATQNRDYWD
VYDDTPELIDERRLRTILGRIQDSNRVQIQLKFGDSDEATILFDLDPLLL
SAQSPDFKQMLQAHLDDGNGVPTQWRVFVWGNVIGTEARSTLENWFRGSD
LSLPGNEDHNLSVLVYSDIIRVSTCLQMNVLMLSAEQQLLRHIDSSITFN
NWWNTLYVTERTGCKHAYHKLLSIADSVCASIKLRHEILRVQNLEESATA
VDALFDQTQSERRALKTFRRSRIYCDWLMSSQEVAKNLQESCELEGYLIG
EGSIRLNGRHWRGTEDELRMQVQDSNRDGETSMERRRNVRLCVVT*

spliced messenger RNA

>Gcaud2026.t1 ID=Gcaud2026.t1|Name=Gcaud2026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2388bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGGCTGAACAATTTGGGCTTGCGGCCCTGGAAGTGTTTTATCC
GTCACCCTCATCGTACAGTCTTCCGCAAGGACCAGTGAGCTGTCCTTTCG
GAATAAGAGCATTTGCCGCCGGCTTTAATTTTGCCCTTCTGGTAGACAAC
TATTACCGTCTGCATTCATGGGGCTACAATTCAGAGTTCCAACGTCTTGG
TCGTCCGTTACCGTACGATTACACCGAAGTTGAGCCCACTCATGTTCCGA
TTAGCGATGTTTCCGCTGTTGTCGACTGCTCATCGGGTGCCAATCATTCG
GTGATTCTCACTGACGACGGTCGTGTTTATTCCTTCGGTTGCGATGACTA
TGGGCAACTGGGGCGCCTGAACTCTCATCCACACCCAGCTCTGGTGCCAC
TACCAGCACGAATCGTACAGGTTCAATCAGGCTGGAACTTTAATGTGGCA
CTCGCAGACGACAGACGCTCAATTTTCACATGGGGCAGTGGAAAAGATGG
TCAGCTTGGGCATGGATACTTTCCAGAGCGCTCCTATCCAACAAGAGTGC
AACTGCAGGGTTCAGCTTTGTGTATAGCTGTTGGACACTCTCATATCGCA
GTCCTTTTAGAGACCGAACCAAATATGCGGAGCGTTCTGACATGGGGCGC
TGACGGACTCGCTTCCACTCGTCAAGATTTGCCGCGCCCAGTTCCCAGAC
TTCCTGAGAGCGACGTTGAGTACATTTCAGCAGGGAAGCAGTTCACAATC
TTTCTGACAAGAGAAGGGCTCGTATTCGCAGCCGGACATGGAGATGAGGG
TCAATTGGGTGTTGAAGACAGACAGGGACGTAATTATGCTTGCGTTGTAC
CAGCACTTTTGGGCCACCACATTGTGAATGTGGCAGCGTCTACCTCGTTC
GCCGTGGCGCTGTCCAGTGAAGGATCATTCTTTGTTTGGGGAAGCGGAAT
TGTTGGGCCCAAAAGACTAAGGGAGGGCTTCTTTTCTTTCTCATCATCCT
TTCCAAATTCTTTTGCTGTTCGAATGAAGGCATTCGGATCAATATCAATG
ATTGCGGCGCCGACAGCATTACCTCCTAATGCTCCATTGCGTCCTTTCCG
AGGTTTTCTCAAATCTTTCTGCGAAGGTCGAGTACTTAACGGATTGAGAA
CGACTCGAGTGCACTACAGTTGTTCATGTCCGGTTCGAACTTGGGGTCAA
TGCAATCAATGCTGTACTCATGCATATGGCCATCTTTTGGCCACCGGTTC
GAATGTGATAAGGTCCAGACTGGAGTCCCATCAGTATTTGGACCTGTCAA
TGTTTGACAAGGACTGTGTCGTTAGGAGCGTGAAGTTAATCTGTAGCGGT
GTTGTGGATGAGGACGCAACTCTAGAAACCTTACAGGAAATGTCGGCGTT
GCTAAGACGCTATGAGGCCCACGCGTTTGAGAGAATAGTTGCAGACATTA
TGAGCAGAAGGCTTCTTCGTCGTGCAACTCAAAACAGAGACTACTGGGAT
GTTTACGATGACACTCCTGAGCTAATTGATGAGCGTCGCCTGCGGACGAT
ACTTGGACGCATTCAAGACTCGAATAGAGTTCAGATACAGTTAAAGTTCG
GCGACAGCGATGAGGCTACAATTCTCTTCGATTTAGATCCCCTTCTTCTC
TCCGCGCAATCGCCAGATTTCAAACAAATGCTTCAAGCACACCTTGATGA
TGGGAACGGAGTTCCCACGCAATGGAGGGTTTTCGTTTGGGGGAACGTCA
TAGGAACAGAGGCAAGAAGCACTTTGGAGAATTGGTTCAGAGGTTCTGAC
TTGAGCCTACCAGGGAATGAGGATCACAACCTGTCTGTTCTAGTCTACTC
TGACATAATTCGCGTGTCGACATGTCTCCAAATGAATGTGTTAATGTTGT
CCGCAGAACAGCAGCTCTTGAGGCATATAGACTCGTCAATAACATTTAAT
AACTGGTGGAATACGCTTTACGTCACGGAAAGAACGGGATGCAAACATGC
GTATCACAAGCTTCTTTCTATTGCAGACTCTGTATGTGCAAGCATTAAGT
TAAGGCACGAAATTTTGAGGGTTCAGAACCTTGAGGAGTCTGCTACTGCA
GTGGACGCGTTATTCGATCAAACTCAATCAGAGAGAAGGGCCCTGAAGAC
ATTCAGAAGATCAAGAATCTACTGTGACTGGCTCATGAGTAGCCAAGAAG
TTGCCAAGAACCTTCAAGAGAGTTGTGAACTGGAGGGATATCTAATCGGA
GAAGGAAGTATTCGACTAAATGGGCGACATTGGAGAGGGACTGAGGATGA
ATTAAGGATGCAAGTTCAAGACAGTAACCGAGATGGAGAAACAAGCATGG
AAAGAAGGAGAAATGTTCGACTGTGTGTAGTAACATAG

protein sequence of Gcaud2026.t1

>Gcaud2026.t1 ID=Gcaud2026.t1|Name=Gcaud2026.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=796bp
MQPAEQFGLAALEVFYPSPSSYSLPQGPVSCPFGIRAFAAGFNFALLVDN
YYRLHSWGYNSEFQRLGRPLPYDYTEVEPTHVPISDVSAVVDCSSGANHS
VILTDDGRVYSFGCDDYGQLGRLNSHPHPALVPLPARIVQVQSGWNFNVA
LADDRRSIFTWGSGKDGQLGHGYFPERSYPTRVQLQGSALCIAVGHSHIA
VLLETEPNMRSVLTWGADGLASTRQDLPRPVPRLPESDVEYISAGKQFTI
FLTREGLVFAAGHGDEGQLGVEDRQGRNYACVVPALLGHHIVNVAASTSF
AVALSSEGSFFVWGSGIVGPKRLREGFFSFSSSFPNSFAVRMKAFGSISM
IAAPTALPPNAPLRPFRGFLKSFCEGRVLNGLRTTRVHYSCSCPVRTWGQ
CNQCCTHAYGHLLATGSNVIRSRLESHQYLDLSMFDKDCVVRSVKLICSG
VVDEDATLETLQEMSALLRRYEAHAFERIVADIMSRRLLRRATQNRDYWD
VYDDTPELIDERRLRTILGRIQDSNRVQIQLKFGDSDEATILFDLDPLLL
SAQSPDFKQMLQAHLDDGNGVPTQWRVFVWGNVIGTEARSTLENWFRGSD
LSLPGNEDHNLSVLVYSDIIRVSTCLQMNVLMLSAEQQLLRHIDSSITFN
NWWNTLYVTERTGCKHAYHKLLSIADSVCASIKLRHEILRVQNLEESATA
VDALFDQTQSERRALKTFRRSRIYCDWLMSSQEVAKNLQESCELEGYLIG
EGSIRLNGRHWRGTEDELRMQVQDSNRDGETSMERRRNVRLCVVT*

mRNA from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2026.t1 ID=Gcaud2026.t1|Name=Gcaud2026.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2388bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+ (Gracilaria caudata M_176_S67 male)
ATGCAACCGGCTGAACAATTTGGGCTTGCGGCCCTGGAAGTGTTTTATCC
GTCACCCTCATCGTACAGTCTTCCGCAAGGACCAGTGAGCTGTCCTTTCG
GAATAAGAGCATTTGCCGCCGGCTTTAATTTTGCCCTTCTGGTAGACAAC
TATTACCGTCTGCATTCATGGGGCTACAATTCAGAGTTCCAACGTCTTGG
TCGTCCGTTACCGTACGATTACACCGAAGTTGAGCCCACTCATGTTCCGA
TTAGCGATGTTTCCGCTGTTGTCGACTGCTCATCGGGTGCCAATCATTCG
GTGATTCTCACTGACGACGGTCGTGTTTATTCCTTCGGTTGCGATGACTA
TGGGCAACTGGGGCGCCTGAACTCTCATCCACACCCAGCTCTGGTGCCAC
TACCAGCACGAATCGTACAGGTTCAATCAGGCTGGAACTTTAATGTGGCA
CTCGCAGACGACAGACGCTCAATTTTCACATGGGGCAGTGGAAAAGATGG
TCAGCTTGGGCATGGATACTTTCCAGAGCGCTCCTATCCAACAAGAGTGC
AACTGCAGGGTTCAGCTTTGTGTATAGCTGTTGGACACTCTCATATCGCA
GTCCTTTTAGAGACCGAACCAAATATGCGGAGCGTTCTGACATGGGGCGC
TGACGGACTCGCTTCCACTCGTCAAGATTTGCCGCGCCCAGTTCCCAGAC
TTCCTGAGAGCGACGTTGAGTACATTTCAGCAGGGAAGCAGTTCACAATC
TTTCTGACAAGAGAAGGGCTCGTATTCGCAGCCGGACATGGAGATGAGGG
TCAATTGGGTGTTGAAGACAGACAGGGACGTAATTATGCTTGCGTTGTAC
CAGCACTTTTGGGCCACCACATTGTGAATGTGGCAGCGTCTACCTCGTTC
GCCGTGGCGCTGTCCAGTGAAGGATCATTCTTTGTTTGGGGAAGCGGAAT
TGTTGGGCCCAAAAGACTAAGGGAGGGCTTCTTTTCTTTCTCATCATCCT
TTCCAAATTCTTTTGCTGTTCGAATGAAGGCATTCGGATCAATATCAATG
ATTGCGGCGCCGACAGCATTACCTCCTAATGCTCCATTGCGTCCTTTCCG
AGGTTTTCTCAAATCTTTCTGCGAAGGTCGAGTACTTAACGGATTGAGAA
CGACTCGAGTGCACTACAGTTGTTCATGTCCGGTTCGAACTTGGGGTCAA
TGCAATCAATGCTGTACTCATGCATATGGCCATCTTTTGGCCACCGGTTC
GAATGTGATAAGGTCCAGACTGGAGTCCCATCAGTATTTGGACCTGTCAA
TGTTTGACAAGGACTGTGTCGTTAGGAGCGTGAAGTTAATCTGTAGCGGT
GTTGTGGATGAGGACGCAACTCTAGAAACCTTACAGGAAATGTCGGCGTT
GCTAAGACGCTATGAGGCCCACGCGTTTGAGAGAATAGTTGCAGACATTA
TGAGCAGAAGGCTTCTTCGTCGTGCAACTCAAAACAGAGACTACTGGGAT
GTTTACGATGACACTCCTGAGCTAATTGATGAGCGTCGCCTGCGGACGAT
ACTTGGACGCATTCAAGACTCGAATAGAGTTCAGATACAGTTAAAGTTCG
GCGACAGCGATGAGGCTACAATTCTCTTCGATTTAGATCCCCTTCTTCTC
TCCGCGCAATCGCCAGATTTCAAACAAATGCTTCAAGCACACCTTGATGA
TGGGAACGGAGTTCCCACGCAATGGAGGGTTTTCGTTTGGGGGAACGTCA
TAGGAACAGAGGCAAGAAGCACTTTGGAGAATTGGTTCAGAGGTTCTGAC
TTGAGCCTACCAGGGAATGAGGATCACAACCTGTCTGTTCTAGTCTACTC
TGACATAATTCGCGTGTCGACATGTCTCCAAATGAATGTGTTAATGTTGT
CCGCAGAACAGCAGCTCTTGAGGCATATAGACTCGTCAATAACATTTAAT
AACTGGTGGAATACGCTTTACGTCACGGAAAGAACGGGATGCAAACATGC
GTATCACAAGCTTCTTTCTATTGCAGACTCTGTATGTGCAAGCATTAAGT
TAAGGCACGAAATTTTGAGGGTTCAGAACCTTGAGGAGTCTGCTACTGCA
GTGGACGCGTTATTCGATCAAACTCAATCAGAGAGAAGGGCCCTGAAGAC
ATTCAGAAGATCAAGAATCTACTGTGACTGGCTCATGAGTAGCCAAGAAG
TTGCCAAGAACCTTCAAGAGAGTTGTGAACTGGAGGGATATCTAATCGGA
GAAGGAAGTATTCGACTAAATGGGCGACATTGGAGAGGGACTGAGGATGA
ATTAAGGATGCAAGTTCAAGACAGTAACCGAGATGGAGAAACAAGCATGG
AAAGAAGGAGAAATGTTCGACTGTGTGTAGTAACATAG

Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+

>Gcaud2026.t1 ID=Gcaud2026.t1|Name=Gcaud2026.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2388bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:7111..9498+ (Gracilaria caudata M_176_S67 male)
ATGCAACCGGCTGAACAATTTGGGCTTGCGGCCCTGGAAGTGTTTTATCC
GTCACCCTCATCGTACAGTCTTCCGCAAGGACCAGTGAGCTGTCCTTTCG
GAATAAGAGCATTTGCCGCCGGCTTTAATTTTGCCCTTCTGGTAGACAAC
TATTACCGTCTGCATTCATGGGGCTACAATTCAGAGTTCCAACGTCTTGG
TCGTCCGTTACCGTACGATTACACCGAAGTTGAGCCCACTCATGTTCCGA
TTAGCGATGTTTCCGCTGTTGTCGACTGCTCATCGGGTGCCAATCATTCG
GTGATTCTCACTGACGACGGTCGTGTTTATTCCTTCGGTTGCGATGACTA
TGGGCAACTGGGGCGCCTGAACTCTCATCCACACCCAGCTCTGGTGCCAC
TACCAGCACGAATCGTACAGGTTCAATCAGGCTGGAACTTTAATGTGGCA
CTCGCAGACGACAGACGCTCAATTTTCACATGGGGCAGTGGAAAAGATGG
TCAGCTTGGGCATGGATACTTTCCAGAGCGCTCCTATCCAACAAGAGTGC
AACTGCAGGGTTCAGCTTTGTGTATAGCTGTTGGACACTCTCATATCGCA
GTCCTTTTAGAGACCGAACCAAATATGCGGAGCGTTCTGACATGGGGCGC
TGACGGACTCGCTTCCACTCGTCAAGATTTGCCGCGCCCAGTTCCCAGAC
TTCCTGAGAGCGACGTTGAGTACATTTCAGCAGGGAAGCAGTTCACAATC
TTTCTGACAAGAGAAGGGCTCGTATTCGCAGCCGGACATGGAGATGAGGG
TCAATTGGGTGTTGAAGACAGACAGGGACGTAATTATGCTTGCGTTGTAC
CAGCACTTTTGGGCCACCACATTGTGAATGTGGCAGCGTCTACCTCGTTC
GCCGTGGCGCTGTCCAGTGAAGGATCATTCTTTGTTTGGGGAAGCGGAAT
TGTTGGGCCCAAAAGACTAAGGGAGGGCTTCTTTTCTTTCTCATCATCCT
TTCCAAATTCTTTTGCTGTTCGAATGAAGGCATTCGGATCAATATCAATG
ATTGCGGCGCCGACAGCATTACCTCCTAATGCTCCATTGCGTCCTTTCCG
AGGTTTTCTCAAATCTTTCTGCGAAGGTCGAGTACTTAACGGATTGAGAA
CGACTCGAGTGCACTACAGTTGTTCATGTCCGGTTCGAACTTGGGGTCAA
TGCAATCAATGCTGTACTCATGCATATGGCCATCTTTTGGCCACCGGTTC
GAATGTGATAAGGTCCAGACTGGAGTCCCATCAGTATTTGGACCTGTCAA
TGTTTGACAAGGACTGTGTCGTTAGGAGCGTGAAGTTAATCTGTAGCGGT
GTTGTGGATGAGGACGCAACTCTAGAAACCTTACAGGAAATGTCGGCGTT
GCTAAGACGCTATGAGGCCCACGCGTTTGAGAGAATAGTTGCAGACATTA
TGAGCAGAAGGCTTCTTCGTCGTGCAACTCAAAACAGAGACTACTGGGAT
GTTTACGATGACACTCCTGAGCTAATTGATGAGCGTCGCCTGCGGACGAT
ACTTGGACGCATTCAAGACTCGAATAGAGTTCAGATACAGTTAAAGTTCG
GCGACAGCGATGAGGCTACAATTCTCTTCGATTTAGATCCCCTTCTTCTC
TCCGCGCAATCGCCAGATTTCAAACAAATGCTTCAAGCACACCTTGATGA
TGGGAACGGAGTTCCCACGCAATGGAGGGTTTTCGTTTGGGGGAACGTCA
TAGGAACAGAGGCAAGAAGCACTTTGGAGAATTGGTTCAGAGGTTCTGAC
TTGAGCCTACCAGGGAATGAGGATCACAACCTGTCTGTTCTAGTCTACTC
TGACATAATTCGCGTGTCGACATGTCTCCAAATGAATGTGTTAATGTTGT
CCGCAGAACAGCAGCTCTTGAGGCATATAGACTCGTCAATAACATTTAAT
AACTGGTGGAATACGCTTTACGTCACGGAAAGAACGGGATGCAAACATGC
GTATCACAAGCTTCTTTCTATTGCAGACTCTGTATGTGCAAGCATTAAGT
TAAGGCACGAAATTTTGAGGGTTCAGAACCTTGAGGAGTCTGCTACTGCA
GTGGACGCGTTATTCGATCAAACTCAATCAGAGAGAAGGGCCCTGAAGAC
ATTCAGAAGATCAAGAATCTACTGTGACTGGCTCATGAGTAGCCAAGAAG
TTGCCAAGAACCTTCAAGAGAGTTGTGAACTGGAGGGATATCTAATCGGA
GAAGGAAGTATTCGACTAAATGGGCGACATTGGAGAGGGACTGAGGATGA
ATTAAGGATGCAAGTTCAAGACAGTAACCGAGATGGAGAAACAAGCATGG
AAAGAAGGAGAAATGTTCGACTGTGTGTAGTAACATAG