Gcaud1974.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1974.t1
Unique Name	Gcaud1974.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:26302..27384 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4641.GSMUA_Achr7P21200_001
PFAMs	DSPc
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K05766,ko:K14165
KEGG Pathway	ko04360,ko04810,map04360,map04810
GOs	GO:0003674,GO:0003824,GO:0004721,GO:0005488,GO:0005515,GO:0005516,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0008138,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0036211,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Evalue	1.23e-17
EggNOG OGs	COG2453@1\|root,KOG1716@2759\|Eukaryota,37URN@33090\|Viridiplantae,3GHBE@35493\|Streptophyta,3KW9W@4447\|Liliopsida
EC	3.1.3.16,3.1.3.48
Description	Belongs to the protein-tyrosine phosphatase family. Non-receptor class dual specificity subfamily
COG category	V
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1974	Gcaud1974	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 26302..27384 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1	Gcaud1974.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 26302..27384 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1.stop1	Gcaud1974.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 26302..26304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1.CDS1	Gcaud1974.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 26302..26946 -
Gcaud1974.t1.CDS2	Gcaud1974.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 27022..27384 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1.exon1	Gcaud1974.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 26302..26946 -
Gcaud1974.t1.exon2	Gcaud1974.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 27022..27384 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1.intron1	Gcaud1974.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_297_length_31759_cov_4.165656 26947..27021 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1974.t1.start1	Gcaud1974.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 27382..27384 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:26302..27384-
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:26302..27384-

mRNA sequence

>Gcaud1974.t1 ID=Gcaud1974.t1|Name=Gcaud1974.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=336bp
MTTPQSRDMCCAERCDLTCSGDSLRTAAVSSQSLPELDLNNIHAEDGNAG
YSYCSRSLFRRSSQPASNLPLLNLSTLREYVPTRDEISTPRRNVERIGRS
LSRVKPYLYIGSKHSVREGSTYLSLSIRDDVGECIDDFFDVCIAFINEAR
QRGGACAVICSQGISRSASVVVAYLISMENVSMEEALRRVRKSRPIIAPN
SAFLNQLSAFESRLKTGRREDWIGKLSYVGSVDKILVARNVRNICVESIE
DEVFIIEKREFKGFAVWKGSAAPEHLWKEALRVANRMGARVATECEVRGL
RASMEEGVLLIARGDDAREVERQISGAIVELVQRH*

spliced messenger RNA

>Gcaud1974.t1 ID=Gcaud1974.t1|Name=Gcaud1974.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:26302..27384- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTACTCCGCAAAGTCGTGACATGTGTTGCGCCGAGCGTTGTGACCT
GACATGCAGCGGTGACTCTCTGCGCACCGCCGCGGTGTCGTCTCAGAGTT
TACCAGAGTTAGACCTCAACAACATTCATGCAGAAGATGGCAACGCAGGA
TACAGTTACTGCTCTCGAAGCTTGTTCCGTCGAAGCTCGCAACCTGCCTC
CAACTTACCGTTGCTGAATTTGTCAACGCTGAGAGAGTACGTGCCCACGC
GCGATGAGATAAGTACGCCGCGTCGAAACGTGGAGCGTATTGGACGCTCT
CTTTCTCGAGTGAAGCCGTATTTGTACATTGGAAGCAAACACTCCGTTCG
GGAGGGGTCGACGTACTTGTCGCTGAGCATTCGAGACGACGTGGGAGAGT
GCATTGACGATTTCTTCGATGTTTGTATTGCGTTCATTAACGAAGCTCGA
CAGAGAGGTGGCGCTTGTGCCGTGATATGCTCGCAGGGCATATCAAGAAG
CGCCTCGGTTGTAGTAGCTTACTTGATAAGCATGGAAAACGTAAGCATGG
AAGAGGCGCTACGAAGAGTTCGCAAAAGTCGCCCCATCATCGCACCAAAT
AGCGCGTTTCTCAACCAACTCAGTGCATTTGAAAGCCGTTTAAAGACAGG
AAGACGCGAGGACTGGATCGGGAAGCTATCGTACGTAGGGAGCGTGGACA
AGATTCTTGTGGCGAGAAACGTGCGTAACATTTGCGTAGAAAGCATTGAA
GACGAGGTGTTTATCATTGAGAAGAGAGAGTTTAAGGGGTTTGCGGTGTG
GAAGGGAAGCGCGGCGCCGGAGCACTTGTGGAAGGAGGCGCTTCGGGTGG
CGAATCGAATGGGCGCTCGAGTGGCGACCGAATGTGAAGTGAGGGGGCTG
CGGGCGTCGATGGAAGAAGGTGTGCTGCTCATTGCGCGCGGCGACGATGC
GCGTGAGGTAGAGCGCCAGATTAGCGGCGCTATAGTTGAACTTGTACAGA
GACATTAA

protein sequence of Gcaud1974.t1

>Gcaud1974.t1 ID=Gcaud1974.t1|Name=Gcaud1974.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=336bp
MTTPQSRDMCCAERCDLTCSGDSLRTAAVSSQSLPELDLNNIHAEDGNAG
YSYCSRSLFRRSSQPASNLPLLNLSTLREYVPTRDEISTPRRNVERIGRS
LSRVKPYLYIGSKHSVREGSTYLSLSIRDDVGECIDDFFDVCIAFINEAR
QRGGACAVICSQGISRSASVVVAYLISMENVSMEEALRRVRKSRPIIAPN
SAFLNQLSAFESRLKTGRREDWIGKLSYVGSVDKILVARNVRNICVESIE
DEVFIIEKREFKGFAVWKGSAAPEHLWKEALRVANRMGARVATECEVRGL
RASMEEGVLLIARGDDAREVERQISGAIVELVQRH*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:26302..27384-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1974.t1 ID=Gcaud1974.t1|Name=Gcaud1974.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:26302..27384- (Gracilaria caudata M_176_S67 male)
ATGACTACTCCGCAAAGTCGTGACATGTGTTGCGCCGAGCGTTGTGACCT
GACATGCAGCGGTGACTCTCTGCGCACCGCCGCGGTGTCGTCTCAGAGTT
TACCAGAGTTAGACCTCAACAACATTCATGCAGAAGATGGCAACGCAGGA
TACAGTTACTGCTCTCGAAGCTTGTTCCGTCGAAGCTCGCAACCTGCCTC
CAACTTACCGTTGCTGAATTTGTCAACGCTGAGAGAGTACGTGCCCACGC
GCGATGAGATAAGTACGCCGCGTCGAAACGTGGAGCGTATTGGACGCTCT
CTTTCTCGAGTGAAGCCGTATTTGTACATTGGAAGCAAACACTCCGTTCG
GGAGGGGTCGACGGTACGCACCAACGGCATTACACACATAATCAACCTGG
GCGGTCATTTGCACCATAACCAACACGCAAACGTCAAGTACTTGTCGCTG
AGCATTCGAGACGACGTGGGAGAGTGCATTGACGATTTCTTCGATGTTTG
TATTGCGTTCATTAACGAAGCTCGACAGAGAGGTGGCGCTTGTGCCGTGA
TATGCTCGCAGGGCATATCAAGAAGCGCCTCGGTTGTAGTAGCTTACTTG
ATAAGCATGGAAAACGTAAGCATGGAAGAGGCGCTACGAAGAGTTCGCAA
AAGTCGCCCCATCATCGCACCAAATAGCGCGTTTCTCAACCAACTCAGTG
CATTTGAAAGCCGTTTAAAGACAGGAAGACGCGAGGACTGGATCGGGAAG
CTATCGTACGTAGGGAGCGTGGACAAGATTCTTGTGGCGAGAAACGTGCG
TAACATTTGCGTAGAAAGCATTGAAGACGAGGTGTTTATCATTGAGAAGA
GAGAGTTTAAGGGGTTTGCGGTGTGGAAGGGAAGCGCGGCGCCGGAGCAC
TTGTGGAAGGAGGCGCTTCGGGTGGCGAATCGAATGGGCGCTCGAGTGGC
GACCGAATGTGAAGTGAGGGGGCTGCGGGCGTCGATGGAAGAAGGTGTGC
TGCTCATTGCGCGCGGCGACGATGCGCGTGAGGTAGAGCGCCAGATTAGC
GGCGCTATAGTTGAACTTGTACAGAGACATTAA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:26302..27384-

>Gcaud1974.t1 ID=Gcaud1974.t1|Name=Gcaud1974.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1008bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:26302..27384- (Gracilaria caudata M_176_S67 male)
ATGACTACTCCGCAAAGTCGTGACATGTGTTGCGCCGAGCGTTGTGACCT
GACATGCAGCGGTGACTCTCTGCGCACCGCCGCGGTGTCGTCTCAGAGTT
TACCAGAGTTAGACCTCAACAACATTCATGCAGAAGATGGCAACGCAGGA
TACAGTTACTGCTCTCGAAGCTTGTTCCGTCGAAGCTCGCAACCTGCCTC
CAACTTACCGTTGCTGAATTTGTCAACGCTGAGAGAGTACGTGCCCACGC
GCGATGAGATAAGTACGCCGCGTCGAAACGTGGAGCGTATTGGACGCTCT
CTTTCTCGAGTGAAGCCGTATTTGTACATTGGAAGCAAACACTCCGTTCG
GGAGGGGTCGACGTACTTGTCGCTGAGCATTCGAGACGACGTGGGAGAGT
GCATTGACGATTTCTTCGATGTTTGTATTGCGTTCATTAACGAAGCTCGA
CAGAGAGGTGGCGCTTGTGCCGTGATATGCTCGCAGGGCATATCAAGAAG
CGCCTCGGTTGTAGTAGCTTACTTGATAAGCATGGAAAACGTAAGCATGG
AAGAGGCGCTACGAAGAGTTCGCAAAAGTCGCCCCATCATCGCACCAAAT
AGCGCGTTTCTCAACCAACTCAGTGCATTTGAAAGCCGTTTAAAGACAGG
AAGACGCGAGGACTGGATCGGGAAGCTATCGTACGTAGGGAGCGTGGACA
AGATTCTTGTGGCGAGAAACGTGCGTAACATTTGCGTAGAAAGCATTGAA
GACGAGGTGTTTATCATTGAGAAGAGAGAGTTTAAGGGGTTTGCGGTGTG
GAAGGGAAGCGCGGCGCCGGAGCACTTGTGGAAGGAGGCGCTTCGGGTGG
CGAATCGAATGGGCGCTCGAGTGGCGACCGAATGTGAAGTGAGGGGGCTG
CGGGCGTCGATGGAAGAAGGTGTGCTGCTCATTGCGCGCGGCGACGATGC
GCGTGAGGTAGAGCGCCAGATTAGCGGCGCTATAGTTGAACTTGTACAGA
GACATTAA