Gcaud1970.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1970.t1
Unique Name	Gcaud1970.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_297_length_31759_cov_4.165656	contig	NODE_297_length_31759_cov_4.165656:15490..16416 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1970	Gcaud1970	Gracilaria caudata M_176_S67 male	gene	NODE_297_length_31759_cov_4.165656 15490..16416 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1970.t1.stop1	Gcaud1970.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_297_length_31759_cov_4.165656 15490..15492 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1970.t1.CDS1	Gcaud1970.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_297_length_31759_cov_4.165656 15490..16416 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1970.t1.exon1	Gcaud1970.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_297_length_31759_cov_4.165656 15490..16416 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1970.t1.start1	Gcaud1970.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_297_length_31759_cov_4.165656 16414..16416 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1970.t1	Gcaud1970.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_297_length_31759_cov_4.165656 15490..16416 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_297_length_31759_cov_4.165656:15490..16416-
coding sequence from alignment at NODE_297_length_31759_cov_4.165656:15490..16416-

mRNA sequence

>Gcaud1970.t1 ID=Gcaud1970.t1|Name=Gcaud1970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MSGFLVLALLILPVYSQTVGTGGAADGGGLAYLGSQSFAGSAGPLSVSFG
GGLVGTMNGASAGIGAGGSEGGGSAASTATEGGLSVSGGMGGGFNNNGMR
RGAGGGGSGSVGNAAGSGIGGTGTSSTQALAADSEGLGFASGSHSADGSS
GLGLHGTFATSQPALSNGLGAGSASQSATGGGGTGIGTGNGGSGQGAGQG
HGEHTSSKRTRTAGLSVGEGGAAAGSSGGSDAGISSANADGTFPILGMGI
ALGSAGEGGTTSATGVGGSGSGSAAGISQRDVVIPTRSQERRHPRFRYLS
KRMDLPYS*

spliced messenger RNA

>Gcaud1970.t1 ID=Gcaud1970.t1|Name=Gcaud1970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:15490..16416- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGGTTTCCTGGTTCTTGCACTGCTTATCTTACCTGTTTATTCACA
GACTGTCGGGACAGGAGGTGCGGCTGATGGAGGTGGACTCGCGTACCTCG
GTTCACAATCATTTGCAGGTTCGGCTGGTCCTCTTTCCGTGTCATTTGGC
GGTGGATTGGTAGGGACAATGAATGGGGCTTCAGCAGGAATAGGTGCAGG
GGGATCAGAAGGAGGAGGTTCCGCTGCGTCAACCGCGACTGAAGGAGGAC
TTTCGGTTTCTGGAGGAATGGGGGGAGGATTTAACAATAACGGAATGCGA
AGAGGAGCTGGTGGAGGGGGAAGTGGGTCCGTCGGGAATGCTGCTGGGTC
TGGTATCGGTGGAACAGGCACGTCCAGTACTCAGGCTTTGGCGGCCGACT
CTGAAGGTCTCGGATTTGCTTCAGGTAGTCATTCTGCGGACGGGTCTTCC
GGACTTGGCTTACATGGTACCTTTGCCACATCCCAACCAGCGCTGAGCAA
CGGATTGGGGGCCGGCTCCGCTTCACAGTCTGCGACGGGAGGGGGTGGGA
CAGGTATTGGGACTGGGAACGGTGGGAGCGGGCAAGGTGCTGGACAAGGT
CATGGAGAGCATACTTCTTCGAAAAGAACGAGAACTGCAGGGCTGTCAGT
TGGAGAAGGAGGGGCAGCGGCAGGGAGCAGCGGCGGTTCTGATGCCGGCA
TTAGCTCCGCAAACGCAGATGGTACCTTTCCGATACTCGGAATGGGGATT
GCACTAGGTAGTGCCGGGGAGGGAGGGACCACAAGTGCCACAGGTGTCGG
TGGAAGTGGATCTGGAAGTGCAGCTGGGATTTCTCAACGGGATGTTGTTA
TTCCAACTAGGTCCCAAGAAAGAAGGCATCCGCGATTCCGCTATCTTTCG
AAGCGAATGGATTTGCCTTATTCATGA

protein sequence of Gcaud1970.t1

>Gcaud1970.t1 ID=Gcaud1970.t1|Name=Gcaud1970.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MSGFLVLALLILPVYSQTVGTGGAADGGGLAYLGSQSFAGSAGPLSVSFG
GGLVGTMNGASAGIGAGGSEGGGSAASTATEGGLSVSGGMGGGFNNNGMR
RGAGGGGSGSVGNAAGSGIGGTGTSSTQALAADSEGLGFASGSHSADGSS
GLGLHGTFATSQPALSNGLGAGSASQSATGGGGTGIGTGNGGSGQGAGQG
HGEHTSSKRTRTAGLSVGEGGAAAGSSGGSDAGISSANADGTFPILGMGI
ALGSAGEGGTTSATGVGGSGSGSAAGISQRDVVIPTRSQERRHPRFRYLS
KRMDLPYS*

mRNA from alignment at NODE_297_length_31759_cov_4.165656:15490..16416-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1970.t1 ID=Gcaud1970.t1|Name=Gcaud1970.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:15490..16416- (Gracilaria caudata M_176_S67 male)
ATGAGTGGTTTCCTGGTTCTTGCACTGCTTATCTTACCTGTTTATTCACA
GACTGTCGGGACAGGAGGTGCGGCTGATGGAGGTGGACTCGCGTACCTCG
GTTCACAATCATTTGCAGGTTCGGCTGGTCCTCTTTCCGTGTCATTTGGC
GGTGGATTGGTAGGGACAATGAATGGGGCTTCAGCAGGAATAGGTGCAGG
GGGATCAGAAGGAGGAGGTTCCGCTGCGTCAACCGCGACTGAAGGAGGAC
TTTCGGTTTCTGGAGGAATGGGGGGAGGATTTAACAATAACGGAATGCGA
AGAGGAGCTGGTGGAGGGGGAAGTGGGTCCGTCGGGAATGCTGCTGGGTC
TGGTATCGGTGGAACAGGCACGTCCAGTACTCAGGCTTTGGCGGCCGACT
CTGAAGGTCTCGGATTTGCTTCAGGTAGTCATTCTGCGGACGGGTCTTCC
GGACTTGGCTTACATGGTACCTTTGCCACATCCCAACCAGCGCTGAGCAA
CGGATTGGGGGCCGGCTCCGCTTCACAGTCTGCGACGGGAGGGGGTGGGA
CAGGTATTGGGACTGGGAACGGTGGGAGCGGGCAAGGTGCTGGACAAGGT
CATGGAGAGCATACTTCTTCGAAAAGAACGAGAACTGCAGGGCTGTCAGT
TGGAGAAGGAGGGGCAGCGGCAGGGAGCAGCGGCGGTTCTGATGCCGGCA
TTAGCTCCGCAAACGCAGATGGTACCTTTCCGATACTCGGAATGGGGATT
GCACTAGGTAGTGCCGGGGAGGGAGGGACCACAAGTGCCACAGGTGTCGG
TGGAAGTGGATCTGGAAGTGCAGCTGGGATTTCTCAACGGGATGTTGTTA
TTCCAACTAGGTCCCAAGAAAGAAGGCATCCGCGATTCCGCTATCTTTCG
AAGCGAATGGATTTGCCTTATTCATGA

Coding sequence (CDS) from alignment at NODE_297_length_31759_cov_4.165656:15490..16416-

>Gcaud1970.t1 ID=Gcaud1970.t1|Name=Gcaud1970.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_297_length_31759_cov_4.165656:15490..16416- (Gracilaria caudata M_176_S67 male)
ATGAGTGGTTTCCTGGTTCTTGCACTGCTTATCTTACCTGTTTATTCACA
GACTGTCGGGACAGGAGGTGCGGCTGATGGAGGTGGACTCGCGTACCTCG
GTTCACAATCATTTGCAGGTTCGGCTGGTCCTCTTTCCGTGTCATTTGGC
GGTGGATTGGTAGGGACAATGAATGGGGCTTCAGCAGGAATAGGTGCAGG
GGGATCAGAAGGAGGAGGTTCCGCTGCGTCAACCGCGACTGAAGGAGGAC
TTTCGGTTTCTGGAGGAATGGGGGGAGGATTTAACAATAACGGAATGCGA
AGAGGAGCTGGTGGAGGGGGAAGTGGGTCCGTCGGGAATGCTGCTGGGTC
TGGTATCGGTGGAACAGGCACGTCCAGTACTCAGGCTTTGGCGGCCGACT
CTGAAGGTCTCGGATTTGCTTCAGGTAGTCATTCTGCGGACGGGTCTTCC
GGACTTGGCTTACATGGTACCTTTGCCACATCCCAACCAGCGCTGAGCAA
CGGATTGGGGGCCGGCTCCGCTTCACAGTCTGCGACGGGAGGGGGTGGGA
CAGGTATTGGGACTGGGAACGGTGGGAGCGGGCAAGGTGCTGGACAAGGT
CATGGAGAGCATACTTCTTCGAAAAGAACGAGAACTGCAGGGCTGTCAGT
TGGAGAAGGAGGGGCAGCGGCAGGGAGCAGCGGCGGTTCTGATGCCGGCA
TTAGCTCCGCAAACGCAGATGGTACCTTTCCGATACTCGGAATGGGGATT
GCACTAGGTAGTGCCGGGGAGGGAGGGACCACAAGTGCCACAGGTGTCGG
TGGAAGTGGATCTGGAAGTGCAGCTGGGATTTCTCAACGGGATGTTGTTA
TTCCAACTAGGTCCCAAGAAAGAAGGCATCCGCGATTCCGCTATCTTTCG
AAGCGAATGGATTTGCCTTATTCATGA