Gcaud1964.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1964.t1
Unique Name	Gcaud1964.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_802_length_17758_cov_4.100526	contig	NODE_802_length_17758_cov_4.100526:16025..17482 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	388401.RB2150_16594
Preferred name	atzB
PFAMs	Amidohydro_1
Max annot lvl	28211\|Alphaproteobacteria
Evalue	2.03e-136
EggNOG OGs	COG0402@1\|root,COG0402@2\|Bacteria,1MVPA@1224\|Proteobacteria,2TSZ0@28211\|Alphaproteobacteria,3ZGI4@58840\|unclassified Rhodobacteraceae
Description	COG0402 Cytosine deaminase and related metal-dependent hydrolases
COG category	F

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1964	Gcaud1964	Gracilaria caudata M_176_S67 male	gene	NODE_802_length_17758_cov_4.100526 16025..17482 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1964.t1.stop1	Gcaud1964.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_802_length_17758_cov_4.100526 16025..16027 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1964.t1.CDS1	Gcaud1964.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_802_length_17758_cov_4.100526 16025..17482 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1964.t1.exon1	Gcaud1964.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_802_length_17758_cov_4.100526 16025..17482 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1964.t1.start1	Gcaud1964.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_802_length_17758_cov_4.100526 17480..17482 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1964.t1	Gcaud1964.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_802_length_17758_cov_4.100526 16025..17482 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_802_length_17758_cov_4.100526:16025..17482-
coding sequence from alignment at NODE_802_length_17758_cov_4.100526:16025..17482-

mRNA sequence

>Gcaud1964.t1 ID=Gcaud1964.t1|Name=Gcaud1964.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=486bp
MTPQPSIPTERILLKDIALLWTGEDDRLLTGCSVVVDSGIIQWVGPHDRL
PTSLRASPCTTVDMSACLVTPGLVNTHHHMYQSLTKCFARNASLFDWLQT
LYPVWNFLTADMVYKSARFAMAELLLSGCTLTSDLLYLYPNDVRLDDTIR
AAKELGIRFHPCRGAVSVGESDGGLPPDTLVEDETHILRDMRRLIDRYHD
ERDGAMVRIALAPCSPFSVSEQLMKKTAQLARTHKNVMLHTHFAENSTDI
EYMRNNVQKGLVEFLEHCGWNQSDCWFAHCVKLSDEDDDGRFESSLDYFA
RRRLGVSHCPSSNCRLGSGVAPVSKMMKLGIPVSIGVDGSASNDSGNMLA
EARMALMVARVREESADAMTTSQVLRMATSGGAAVLGRGDVGRIRAGMCA
DMAAWRLDAPAFAGSFHSHEAVLSALILGNGGDLKAHYVMVNGVEVVRAG
ELSGEKDMITITREHQEAAMKLWAIASAQLGRGVP*

spliced messenger RNA

>Gcaud1964.t1 ID=Gcaud1964.t1|Name=Gcaud1964.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:16025..17482- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCCCAACCTTCTATCCCCACCGAGCGCATCCTGCTCAAAGACAT
CGCGCTGCTGTGGACTGGCGAAGATGACCGTCTGCTCACCGGCTGTTCCG
TCGTGGTGGACTCAGGCATCATCCAATGGGTCGGTCCACACGACCGTCTG
CCCACGTCGCTTCGCGCCTCGCCCTGCACCACCGTCGACATGAGCGCGTG
CCTCGTCACGCCCGGGCTGGTCAACACGCACCACCACATGTACCAGAGCC
TCACCAAATGCTTTGCGCGCAACGCGTCGCTGTTCGACTGGCTTCAGACG
CTGTATCCCGTGTGGAACTTCCTCACCGCCGACATGGTGTACAAGTCGGC
GCGATTCGCAATGGCCGAGTTGTTATTGTCCGGCTGCACGCTCACCTCCG
ACCTGCTGTATCTGTACCCCAATGACGTCAGGCTAGACGACACCATCCGC
GCCGCAAAGGAACTGGGAATCCGTTTCCATCCGTGCCGAGGCGCCGTGTC
GGTGGGCGAGAGTGACGGCGGTCTGCCACCGGACACGTTGGTAGAGGACG
AGACGCACATTTTGCGCGACATGCGCCGCCTGATCGATCGCTATCACGAC
GAGCGTGACGGCGCCATGGTGCGCATCGCACTGGCACCGTGTTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAAAACGGCGCAATTGGCGCGTACTC
ACAAGAACGTAATGCTACACACTCACTTTGCGGAGAATTCGACCGACATT
GAATACATGCGCAACAACGTGCAAAAGGGATTGGTGGAGTTTCTGGAGCA
CTGCGGGTGGAATCAGAGCGATTGTTGGTTTGCACATTGCGTGAAGCTGA
GCGATGAAGATGATGACGGACGCTTTGAGTCGTCTCTGGACTACTTTGCG
AGACGGCGACTGGGCGTTTCGCACTGCCCGTCGTCCAACTGTCGACTGGG
CTCTGGCGTGGCACCGGTGTCGAAGATGATGAAATTGGGCATCCCGGTGA
GCATTGGAGTGGACGGCTCGGCCAGCAACGACTCTGGCAACATGCTGGCG
GAGGCACGCATGGCGCTGATGGTGGCGCGCGTGAGGGAGGAGAGCGCGGA
CGCGATGACGACGTCGCAGGTGCTGCGCATGGCCACGTCGGGCGGCGCGG
CGGTGCTGGGACGCGGCGACGTGGGTCGCATCCGCGCGGGCATGTGCGCG
GACATGGCGGCGTGGAGACTGGACGCGCCGGCGTTCGCAGGCTCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGATTTTGGGCAACGGGGGCGACC
TGAAGGCGCACTACGTGATGGTGAACGGCGTGGAGGTGGTGCGCGCGGGC
GAATTGAGCGGCGAGAAGGACATGATCACAATCACCAGAGAGCACCAGGA
GGCGGCGATGAAGCTGTGGGCAATAGCGTCTGCGCAGCTGGGACGCGGCG
TGCCATGA

protein sequence of Gcaud1964.t1

>Gcaud1964.t1 ID=Gcaud1964.t1|Name=Gcaud1964.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=486bp
MTPQPSIPTERILLKDIALLWTGEDDRLLTGCSVVVDSGIIQWVGPHDRL
PTSLRASPCTTVDMSACLVTPGLVNTHHHMYQSLTKCFARNASLFDWLQT
LYPVWNFLTADMVYKSARFAMAELLLSGCTLTSDLLYLYPNDVRLDDTIR
AAKELGIRFHPCRGAVSVGESDGGLPPDTLVEDETHILRDMRRLIDRYHD
ERDGAMVRIALAPCSPFSVSEQLMKKTAQLARTHKNVMLHTHFAENSTDI
EYMRNNVQKGLVEFLEHCGWNQSDCWFAHCVKLSDEDDDGRFESSLDYFA
RRRLGVSHCPSSNCRLGSGVAPVSKMMKLGIPVSIGVDGSASNDSGNMLA
EARMALMVARVREESADAMTTSQVLRMATSGGAAVLGRGDVGRIRAGMCA
DMAAWRLDAPAFAGSFHSHEAVLSALILGNGGDLKAHYVMVNGVEVVRAG
ELSGEKDMITITREHQEAAMKLWAIASAQLGRGVP*

mRNA from alignment at NODE_802_length_17758_cov_4.100526:16025..17482-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1964.t1 ID=Gcaud1964.t1|Name=Gcaud1964.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:16025..17482- (Gracilaria caudata M_176_S67 male)
ATGACGCCCCAACCTTCTATCCCCACCGAGCGCATCCTGCTCAAAGACAT
CGCGCTGCTGTGGACTGGCGAAGATGACCGTCTGCTCACCGGCTGTTCCG
TCGTGGTGGACTCAGGCATCATCCAATGGGTCGGTCCACACGACCGTCTG
CCCACGTCGCTTCGCGCCTCGCCCTGCACCACCGTCGACATGAGCGCGTG
CCTCGTCACGCCCGGGCTGGTCAACACGCACCACCACATGTACCAGAGCC
TCACCAAATGCTTTGCGCGCAACGCGTCGCTGTTCGACTGGCTTCAGACG
CTGTATCCCGTGTGGAACTTCCTCACCGCCGACATGGTGTACAAGTCGGC
GCGATTCGCAATGGCCGAGTTGTTATTGTCCGGCTGCACGCTCACCTCCG
ACCTGCTGTATCTGTACCCCAATGACGTCAGGCTAGACGACACCATCCGC
GCCGCAAAGGAACTGGGAATCCGTTTCCATCCGTGCCGAGGCGCCGTGTC
GGTGGGCGAGAGTGACGGCGGTCTGCCACCGGACACGTTGGTAGAGGACG
AGACGCACATTTTGCGCGACATGCGCCGCCTGATCGATCGCTATCACGAC
GAGCGTGACGGCGCCATGGTGCGCATCGCACTGGCACCGTGTTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAAAACGGCGCAATTGGCGCGTACTC
ACAAGAACGTAATGCTACACACTCACTTTGCGGAGAATTCGACCGACATT
GAATACATGCGCAACAACGTGCAAAAGGGATTGGTGGAGTTTCTGGAGCA
CTGCGGGTGGAATCAGAGCGATTGTTGGTTTGCACATTGCGTGAAGCTGA
GCGATGAAGATGATGACGGACGCTTTGAGTCGTCTCTGGACTACTTTGCG
AGACGGCGACTGGGCGTTTCGCACTGCCCGTCGTCCAACTGTCGACTGGG
CTCTGGCGTGGCACCGGTGTCGAAGATGATGAAATTGGGCATCCCGGTGA
GCATTGGAGTGGACGGCTCGGCCAGCAACGACTCTGGCAACATGCTGGCG
GAGGCACGCATGGCGCTGATGGTGGCGCGCGTGAGGGAGGAGAGCGCGGA
CGCGATGACGACGTCGCAGGTGCTGCGCATGGCCACGTCGGGCGGCGCGG
CGGTGCTGGGACGCGGCGACGTGGGTCGCATCCGCGCGGGCATGTGCGCG
GACATGGCGGCGTGGAGACTGGACGCGCCGGCGTTCGCAGGCTCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGATTTTGGGCAACGGGGGCGACC
TGAAGGCGCACTACGTGATGGTGAACGGCGTGGAGGTGGTGCGCGCGGGC
GAATTGAGCGGCGAGAAGGACATGATCACAATCACCAGAGAGCACCAGGA
GGCGGCGATGAAGCTGTGGGCAATAGCGTCTGCGCAGCTGGGACGCGGCG
TGCCATGA

Coding sequence (CDS) from alignment at NODE_802_length_17758_cov_4.100526:16025..17482-

>Gcaud1964.t1 ID=Gcaud1964.t1|Name=Gcaud1964.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1458bp|location=Sequence derived from alignment at NODE_802_length_17758_cov_4.100526:16025..17482- (Gracilaria caudata M_176_S67 male)
ATGACGCCCCAACCTTCTATCCCCACCGAGCGCATCCTGCTCAAAGACAT
CGCGCTGCTGTGGACTGGCGAAGATGACCGTCTGCTCACCGGCTGTTCCG
TCGTGGTGGACTCAGGCATCATCCAATGGGTCGGTCCACACGACCGTCTG
CCCACGTCGCTTCGCGCCTCGCCCTGCACCACCGTCGACATGAGCGCGTG
CCTCGTCACGCCCGGGCTGGTCAACACGCACCACCACATGTACCAGAGCC
TCACCAAATGCTTTGCGCGCAACGCGTCGCTGTTCGACTGGCTTCAGACG
CTGTATCCCGTGTGGAACTTCCTCACCGCCGACATGGTGTACAAGTCGGC
GCGATTCGCAATGGCCGAGTTGTTATTGTCCGGCTGCACGCTCACCTCCG
ACCTGCTGTATCTGTACCCCAATGACGTCAGGCTAGACGACACCATCCGC
GCCGCAAAGGAACTGGGAATCCGTTTCCATCCGTGCCGAGGCGCCGTGTC
GGTGGGCGAGAGTGACGGCGGTCTGCCACCGGACACGTTGGTAGAGGACG
AGACGCACATTTTGCGCGACATGCGCCGCCTGATCGATCGCTATCACGAC
GAGCGTGACGGCGCCATGGTGCGCATCGCACTGGCACCGTGTTCGCCGTT
CAGCGTGTCGGAGCAGCTGATGAAGAAAACGGCGCAATTGGCGCGTACTC
ACAAGAACGTAATGCTACACACTCACTTTGCGGAGAATTCGACCGACATT
GAATACATGCGCAACAACGTGCAAAAGGGATTGGTGGAGTTTCTGGAGCA
CTGCGGGTGGAATCAGAGCGATTGTTGGTTTGCACATTGCGTGAAGCTGA
GCGATGAAGATGATGACGGACGCTTTGAGTCGTCTCTGGACTACTTTGCG
AGACGGCGACTGGGCGTTTCGCACTGCCCGTCGTCCAACTGTCGACTGGG
CTCTGGCGTGGCACCGGTGTCGAAGATGATGAAATTGGGCATCCCGGTGA
GCATTGGAGTGGACGGCTCGGCCAGCAACGACTCTGGCAACATGCTGGCG
GAGGCACGCATGGCGCTGATGGTGGCGCGCGTGAGGGAGGAGAGCGCGGA
CGCGATGACGACGTCGCAGGTGCTGCGCATGGCCACGTCGGGCGGCGCGG
CGGTGCTGGGACGCGGCGACGTGGGTCGCATCCGCGCGGGCATGTGCGCG
GACATGGCGGCGTGGAGACTGGACGCGCCGGCGTTCGCAGGCTCGTTCCA
CAGCCACGAGGCGGTGCTGAGCGCGCTGATTTTGGGCAACGGGGGCGACC
TGAAGGCGCACTACGTGATGGTGAACGGCGTGGAGGTGGTGCGCGCGGGC
GAATTGAGCGGCGAGAAGGACATGATCACAATCACCAGAGAGCACCAGGA
GGCGGCGATGAAGCTGTGGGCAATAGCGTCTGCGCAGCTGGGACGCGGCG
TGCCATGA