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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 794903.OPIT5_14840 |
| Max annot lvl | 414999|Opitutae |
| Evalue | 1.87e-14 |
| EggNOG OGs | COG1636@1|root,COG1636@2|Bacteria,46YPJ@74201|Verrucomicrobia,3K9XZ@414999|Opitutae |
| Description | Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr) |
| COG category | C |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1944.t1.start1 | Gcaud1944.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_804_length_17738_cov_4.544908 1320..1322 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1944.t1.stop1 | Gcaud1944.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_804_length_17738_cov_4.544908 3933..3935 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1944.t1 ID=Gcaud1944.t1|Name=Gcaud1944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=872bp MFLFVRALLLLTLVVVSTSAPIPSPAPPRPYPVPSTRFYLSNITGTAAYF TLEKPVHPSVIGPIRASLRRPTVPPANEHPRVLVSSDEWNALLARHSDPA HFNQPNSWSASLIALTVKHGPNASVVHKLAELERQRRTDVFEGKASVQFS SAAEFERYRQSLKPLADHLKLMTEADSHSLFLCAFWAQVAEKVPPQQHFL NASVVDTCIHATVAWAKVLMAHRTYHCNPSCSVTEHDAEKAYLWNYDSIW EVSNDWYTAGATLALAYDVLYHRLSDHQRRVVRSALALLVMKRWTWGVVD ENSAKYPDAETHPHRIVSNWGMYHSNLYITNLAIEGESGFVPYAQHVLTE HQSTGFNSKMNRKFEALIKAYMTHSVYPDGSSFEDGYTYHTAFREGSLAF LAAHRRGHNLLNTPRFRNIIHNVAQMFEPWTCAPLVGHSSGGGQGYPAYV ALLRYAYPDGILPRMVWAQRFGKNFTNDANCRIWWTQTMTQVLIFGDEHK QESSMVADSPESLPAPAKKHFPLAYVSTRRGLIIMRSTYSQMSSYIHFDA RPDSFYLGHDNADRGIITFSAMKQRWIDDLPWKENIDSRKHSLLHIDGLA QAVKAPSVTILKAVDTPSSSIASADLTYTYNIQWAQAWQGPSIGTADVVE YRKDGSFYEKKYSFPDAEIHSPWDLGWPMEDDASDIGFSRNMTMNGNADL AAFGMNEWRRHYREQLLQHMVRSVVMVRSQTDDVGYGVMVDSVSAGPGTH TFESYLILDDEVNVEKAASKCEGKQCKIVLASTKGDLLDVHVLALGNKVS FRVEQFDGHKRLIVKSVREASEELWMAFCPRSRDPNDFSMAREGNYVKFS TQGSIHSFRVRDSDHTVIERR* back to topspliced messenger RNA >Gcaud1944.t1 ID=Gcaud1944.t1|Name=Gcaud1944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2616bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:1320..3935+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTCTCTTCGTTCGCGCTCTTCTTTTATTGACTCTTGTAGTAGTGAG CACATCCGCTCCAATCCCATCACCAGCTCCTCCTCGTCCGTATCCTGTAC CCTCCACCCGTTTTTATCTGTCCAATATAACCGGAACGGCCGCCTATTTT ACCCTTGAGAAGCCAGTGCACCCGTCCGTTATCGGCCCTATTCGGGCGTC CTTGCGTCGTCCAACAGTCCCTCCAGCAAACGAGCACCCGCGCGTGCTCG TCTCGTCCGATGAGTGGAACGCTCTCCTTGCTCGACATTCTGATCCAGCC CACTTCAACCAGCCTAACTCCTGGTCTGCTTCACTCATCGCCCTGACCGT CAAGCACGGTCCAAATGCCTCTGTAGTCCACAAACTTGCTGAGCTTGAGC GACAGCGTCGTACAGATGTGTTTGAAGGAAAGGCATCAGTTCAATTTTCG TCCGCAGCTGAGTTTGAACGCTATCGACAGTCGTTGAAACCGCTTGCAGA CCATCTTAAACTTATGACAGAAGCAGATTCGCACTCATTGTTCTTGTGTG CGTTCTGGGCTCAGGTCGCTGAAAAAGTACCCCCACAGCAACACTTTCTC AATGCCTCCGTCGTTGACACTTGCATTCATGCCACCGTCGCGTGGGCCAA GGTGCTCATGGCGCATCGTACGTACCATTGTAACCCCTCATGCTCCGTCA CGGAGCATGATGCCGAAAAGGCTTACCTATGGAACTATGATTCCATTTGG GAAGTCAGCAATGATTGGTACACTGCAGGAGCTACACTCGCTCTTGCCTA TGACGTTTTGTATCATCGATTGTCCGATCATCAACGTCGAGTCGTGCGTT CGGCGCTCGCATTGCTTGTGATGAAACGATGGACGTGGGGTGTTGTAGAT GAAAACTCTGCCAAATATCCGGACGCAGAGACTCATCCCCATCGAATCGT TAGTAATTGGGGCATGTATCACTCCAACTTGTACATCACAAACCTCGCAA TTGAAGGAGAATCCGGTTTTGTGCCTTATGCACAGCATGTACTCACTGAA CACCAGTCCACCGGCTTCAACTCAAAAATGAATCGCAAGTTCGAAGCTCT CATCAAAGCGTACATGACACATTCGGTATACCCAGATGGTTCCAGCTTTG AAGATGGTTACACCTACCACACAGCGTTTCGAGAAGGCTCTTTGGCCTTT CTCGCCGCTCACAGACGCGGTCATAATCTTCTCAACACGCCCCGATTCAG AAACATCATCCACAATGTGGCACAGATGTTTGAGCCGTGGACATGCGCTC CTCTAGTTGGTCACTCCAGCGGAGGTGGTCAAGGGTATCCAGCATACGTT GCTCTTTTACGCTATGCATACCCGGACGGCATTCTCCCGCGGATGGTTTG GGCGCAACGGTTCGGAAAGAACTTCACAAATGACGCAAACTGTCGCATCT GGTGGACCCAAACCATGACGCAGGTGCTTATTTTTGGTGACGAACATAAG CAAGAGTCTTCTATGGTGGCGGATTCTCCTGAATCCTTACCAGCGCCGGC AAAGAAGCACTTTCCTCTGGCGTATGTATCGACGAGGAGAGGTCTTATCA TCATGCGATCAACGTACTCCCAAATGTCATCGTACATACATTTCGATGCC CGTCCAGATTCTTTCTATCTCGGACACGATAATGCCGACAGAGGTATAAT CACGTTCTCTGCAATGAAACAAAGATGGATTGACGACCTTCCCTGGAAGG AAAACATTGATTCTCGAAAGCACAGTCTACTGCATATCGACGGTCTTGCG CAGGCTGTCAAAGCTCCCTCCGTAACCATCTTGAAAGCTGTAGATACTCC GTCCTCTTCGATAGCCTCTGCTGACCTAACGTATACCTACAATATTCAGT GGGCTCAAGCGTGGCAGGGGCCGAGTATAGGCACCGCTGACGTCGTTGAG TACCGAAAGGATGGCTCTTTTTATGAAAAGAAGTACTCATTTCCTGATGC TGAAATACACAGTCCATGGGACCTTGGATGGCCCATGGAGGACGATGCGT CTGATATCGGGTTCAGTCGAAACATGACAATGAACGGGAACGCTGACTTG GCTGCATTCGGAATGAATGAATGGAGAAGGCATTATCGCGAACAACTTCT GCAGCACATGGTTCGTTCCGTAGTTATGGTCAGATCACAAACTGATGATG TCGGATATGGAGTAATGGTTGATTCAGTGTCAGCTGGACCAGGCACCCAT ACTTTTGAGTCTTACTTGATTCTCGACGATGAGGTCAACGTGGAAAAAGC GGCATCAAAGTGCGAAGGAAAGCAATGCAAGATTGTGCTCGCATCTACAA AAGGTGACTTGCTTGACGTGCATGTGTTAGCTCTCGGCAACAAGGTGAGC TTTCGAGTAGAACAGTTCGATGGACACAAAAGACTCATCGTCAAGAGTGT TCGGGAGGCTTCCGAAGAGCTTTGGATGGCGTTCTGTCCTCGATCCAGAG ATCCCAACGACTTTAGCATGGCTCGTGAAGGTAACTATGTTAAGTTTTCG ACACAGGGTAGCATTCATTCTTTCCGAGTGCGCGACTCGGACCACACTGT GATTGAGAGGCGATGA back to topprotein sequence of Gcaud1944.t1 >Gcaud1944.t1 ID=Gcaud1944.t1|Name=Gcaud1944.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=872bp
MFLFVRALLLLTLVVVSTSAPIPSPAPPRPYPVPSTRFYLSNITGTAAYF TLEKPVHPSVIGPIRASLRRPTVPPANEHPRVLVSSDEWNALLARHSDPA HFNQPNSWSASLIALTVKHGPNASVVHKLAELERQRRTDVFEGKASVQFS SAAEFERYRQSLKPLADHLKLMTEADSHSLFLCAFWAQVAEKVPPQQHFL NASVVDTCIHATVAWAKVLMAHRTYHCNPSCSVTEHDAEKAYLWNYDSIW EVSNDWYTAGATLALAYDVLYHRLSDHQRRVVRSALALLVMKRWTWGVVD ENSAKYPDAETHPHRIVSNWGMYHSNLYITNLAIEGESGFVPYAQHVLTE HQSTGFNSKMNRKFEALIKAYMTHSVYPDGSSFEDGYTYHTAFREGSLAF LAAHRRGHNLLNTPRFRNIIHNVAQMFEPWTCAPLVGHSSGGGQGYPAYV ALLRYAYPDGILPRMVWAQRFGKNFTNDANCRIWWTQTMTQVLIFGDEHK QESSMVADSPESLPAPAKKHFPLAYVSTRRGLIIMRSTYSQMSSYIHFDA RPDSFYLGHDNADRGIITFSAMKQRWIDDLPWKENIDSRKHSLLHIDGLA QAVKAPSVTILKAVDTPSSSIASADLTYTYNIQWAQAWQGPSIGTADVVE YRKDGSFYEKKYSFPDAEIHSPWDLGWPMEDDASDIGFSRNMTMNGNADL AAFGMNEWRRHYREQLLQHMVRSVVMVRSQTDDVGYGVMVDSVSAGPGTH TFESYLILDDEVNVEKAASKCEGKQCKIVLASTKGDLLDVHVLALGNKVS FRVEQFDGHKRLIVKSVREASEELWMAFCPRSRDPNDFSMAREGNYVKFS TQGSIHSFRVRDSDHTVIERR* back to topmRNA from alignment at NODE_804_length_17738_cov_4.544908:1320..3935+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1944.t1 ID=Gcaud1944.t1|Name=Gcaud1944.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2616bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:1320..3935+ (Gracilaria caudata M_176_S67 male) ATGTTTCTCTTCGTTCGCGCTCTTCTTTTATTGACTCTTGTAGTAGTGAG
CACATCCGCTCCAATCCCATCACCAGCTCCTCCTCGTCCGTATCCTGTAC
CCTCCACCCGTTTTTATCTGTCCAATATAACCGGAACGGCCGCCTATTTT
ACCCTTGAGAAGCCAGTGCACCCGTCCGTTATCGGCCCTATTCGGGCGTC
CTTGCGTCGTCCAACAGTCCCTCCAGCAAACGAGCACCCGCGCGTGCTCG
TCTCGTCCGATGAGTGGAACGCTCTCCTTGCTCGACATTCTGATCCAGCC
CACTTCAACCAGCCTAACTCCTGGTCTGCTTCACTCATCGCCCTGACCGT
CAAGCACGGTCCAAATGCCTCTGTAGTCCACAAACTTGCTGAGCTTGAGC
GACAGCGTCGTACAGATGTGTTTGAAGGAAAGGCATCAGTTCAATTTTCG
TCCGCAGCTGAGTTTGAACGCTATCGACAGTCGTTGAAACCGCTTGCAGA
CCATCTTAAACTTATGACAGAAGCAGATTCGCACTCATTGTTCTTGTGTG
CGTTCTGGGCTCAGGTCGCTGAAAAAGTACCCCCACAGCAACACTTTCTC
AATGCCTCCGTCGTTGACACTTGCATTCATGCCACCGTCGCGTGGGCCAA
GGTGCTCATGGCGCATCGTACGTACCATTGTAACCCCTCATGCTCCGTCA
CGGAGCATGATGCCGAAAAGGCTTACCTATGGAACTATGATTCCATTTGG
GAAGTCAGCAATGATTGGTACACTGCAGGAGCTACACTCGCTCTTGCCTA
TGACGTTTTGTATCATCGATTGTCCGATCATCAACGTCGAGTCGTGCGTT
CGGCGCTCGCATTGCTTGTGATGAAACGATGGACGTGGGGTGTTGTAGAT
GAAAACTCTGCCAAATATCCGGACGCAGAGACTCATCCCCATCGAATCGT
TAGTAATTGGGGCATGTATCACTCCAACTTGTACATCACAAACCTCGCAA
TTGAAGGAGAATCCGGTTTTGTGCCTTATGCACAGCATGTACTCACTGAA
CACCAGTCCACCGGCTTCAACTCAAAAATGAATCGCAAGTTCGAAGCTCT
CATCAAAGCGTACATGACACATTCGGTATACCCAGATGGTTCCAGCTTTG
AAGATGGTTACACCTACCACACAGCGTTTCGAGAAGGCTCTTTGGCCTTT
CTCGCCGCTCACAGACGCGGTCATAATCTTCTCAACACGCCCCGATTCAG
AAACATCATCCACAATGTGGCACAGATGTTTGAGCCGTGGACATGCGCTC
CTCTAGTTGGTCACTCCAGCGGAGGTGGTCAAGGGTATCCAGCATACGTT
GCTCTTTTACGCTATGCATACCCGGACGGCATTCTCCCGCGGATGGTTTG
GGCGCAACGGTTCGGAAAGAACTTCACAAATGACGCAAACTGTCGCATCT
GGTGGACCCAAACCATGACGCAGGTGCTTATTTTTGGTGACGAACATAAG
CAAGAGTCTTCTATGGTGGCGGATTCTCCTGAATCCTTACCAGCGCCGGC
AAAGAAGCACTTTCCTCTGGCGTATGTATCGACGAGGAGAGGTCTTATCA
TCATGCGATCAACGTACTCCCAAATGTCATCGTACATACATTTCGATGCC
CGTCCAGATTCTTTCTATCTCGGACACGATAATGCCGACAGAGGTATAAT
CACGTTCTCTGCAATGAAACAAAGATGGATTGACGACCTTCCCTGGAAGG
AAAACATTGATTCTCGAAAGCACAGTCTACTGCATATCGACGGTCTTGCG
CAGGCTGTCAAAGCTCCCTCCGTAACCATCTTGAAAGCTGTAGATACTCC
GTCCTCTTCGATAGCCTCTGCTGACCTAACGTATACCTACAATATTCAGT
GGGCTCAAGCGTGGCAGGGGCCGAGTATAGGCACCGCTGACGTCGTTGAG
TACCGAAAGGATGGCTCTTTTTATGAAAAGAAGTACTCATTTCCTGATGC
TGAAATACACAGTCCATGGGACCTTGGATGGCCCATGGAGGACGATGCGT
CTGATATCGGGTTCAGTCGAAACATGACAATGAACGGGAACGCTGACTTG
GCTGCATTCGGAATGAATGAATGGAGAAGGCATTATCGCGAACAACTTCT
GCAGCACATGGTTCGTTCCGTAGTTATGGTCAGATCACAAACTGATGATG
TCGGATATGGAGTAATGGTTGATTCAGTGTCAGCTGGACCAGGCACCCAT
ACTTTTGAGTCTTACTTGATTCTCGACGATGAGGTCAACGTGGAAAAAGC
GGCATCAAAGTGCGAAGGAAAGCAATGCAAGATTGTGCTCGCATCTACAA
AAGGTGACTTGCTTGACGTGCATGTGTTAGCTCTCGGCAACAAGGTGAGC
TTTCGAGTAGAACAGTTCGATGGACACAAAAGACTCATCGTCAAGAGTGT
TCGGGAGGCTTCCGAAGAGCTTTGGATGGCGTTCTGTCCTCGATCCAGAG
ATCCCAACGACTTTAGCATGGCTCGTGAAGGTAACTATGTTAAGTTTTCG
ACACAGGGTAGCATTCATTCTTTCCGAGTGCGCGACTCGGACCACACTGT
GATTGAGAGGCGATGA back to topCoding sequence (CDS) from alignment at NODE_804_length_17738_cov_4.544908:1320..3935+ >Gcaud1944.t1 ID=Gcaud1944.t1|Name=Gcaud1944.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2616bp|location=Sequence derived from alignment at NODE_804_length_17738_cov_4.544908:1320..3935+ (Gracilaria caudata M_176_S67 male) ATGTTTCTCTTCGTTCGCGCTCTTCTTTTATTGACTCTTGTAGTAGTGAG CACATCCGCTCCAATCCCATCACCAGCTCCTCCTCGTCCGTATCCTGTAC CCTCCACCCGTTTTTATCTGTCCAATATAACCGGAACGGCCGCCTATTTT ACCCTTGAGAAGCCAGTGCACCCGTCCGTTATCGGCCCTATTCGGGCGTC CTTGCGTCGTCCAACAGTCCCTCCAGCAAACGAGCACCCGCGCGTGCTCG TCTCGTCCGATGAGTGGAACGCTCTCCTTGCTCGACATTCTGATCCAGCC CACTTCAACCAGCCTAACTCCTGGTCTGCTTCACTCATCGCCCTGACCGT CAAGCACGGTCCAAATGCCTCTGTAGTCCACAAACTTGCTGAGCTTGAGC GACAGCGTCGTACAGATGTGTTTGAAGGAAAGGCATCAGTTCAATTTTCG TCCGCAGCTGAGTTTGAACGCTATCGACAGTCGTTGAAACCGCTTGCAGA CCATCTTAAACTTATGACAGAAGCAGATTCGCACTCATTGTTCTTGTGTG CGTTCTGGGCTCAGGTCGCTGAAAAAGTACCCCCACAGCAACACTTTCTC AATGCCTCCGTCGTTGACACTTGCATTCATGCCACCGTCGCGTGGGCCAA GGTGCTCATGGCGCATCGTACGTACCATTGTAACCCCTCATGCTCCGTCA CGGAGCATGATGCCGAAAAGGCTTACCTATGGAACTATGATTCCATTTGG GAAGTCAGCAATGATTGGTACACTGCAGGAGCTACACTCGCTCTTGCCTA TGACGTTTTGTATCATCGATTGTCCGATCATCAACGTCGAGTCGTGCGTT CGGCGCTCGCATTGCTTGTGATGAAACGATGGACGTGGGGTGTTGTAGAT GAAAACTCTGCCAAATATCCGGACGCAGAGACTCATCCCCATCGAATCGT TAGTAATTGGGGCATGTATCACTCCAACTTGTACATCACAAACCTCGCAA TTGAAGGAGAATCCGGTTTTGTGCCTTATGCACAGCATGTACTCACTGAA CACCAGTCCACCGGCTTCAACTCAAAAATGAATCGCAAGTTCGAAGCTCT CATCAAAGCGTACATGACACATTCGGTATACCCAGATGGTTCCAGCTTTG AAGATGGTTACACCTACCACACAGCGTTTCGAGAAGGCTCTTTGGCCTTT CTCGCCGCTCACAGACGCGGTCATAATCTTCTCAACACGCCCCGATTCAG AAACATCATCCACAATGTGGCACAGATGTTTGAGCCGTGGACATGCGCTC CTCTAGTTGGTCACTCCAGCGGAGGTGGTCAAGGGTATCCAGCATACGTT GCTCTTTTACGCTATGCATACCCGGACGGCATTCTCCCGCGGATGGTTTG GGCGCAACGGTTCGGAAAGAACTTCACAAATGACGCAAACTGTCGCATCT GGTGGACCCAAACCATGACGCAGGTGCTTATTTTTGGTGACGAACATAAG CAAGAGTCTTCTATGGTGGCGGATTCTCCTGAATCCTTACCAGCGCCGGC AAAGAAGCACTTTCCTCTGGCGTATGTATCGACGAGGAGAGGTCTTATCA TCATGCGATCAACGTACTCCCAAATGTCATCGTACATACATTTCGATGCC CGTCCAGATTCTTTCTATCTCGGACACGATAATGCCGACAGAGGTATAAT CACGTTCTCTGCAATGAAACAAAGATGGATTGACGACCTTCCCTGGAAGG AAAACATTGATTCTCGAAAGCACAGTCTACTGCATATCGACGGTCTTGCG CAGGCTGTCAAAGCTCCCTCCGTAACCATCTTGAAAGCTGTAGATACTCC GTCCTCTTCGATAGCCTCTGCTGACCTAACGTATACCTACAATATTCAGT GGGCTCAAGCGTGGCAGGGGCCGAGTATAGGCACCGCTGACGTCGTTGAG TACCGAAAGGATGGCTCTTTTTATGAAAAGAAGTACTCATTTCCTGATGC TGAAATACACAGTCCATGGGACCTTGGATGGCCCATGGAGGACGATGCGT CTGATATCGGGTTCAGTCGAAACATGACAATGAACGGGAACGCTGACTTG GCTGCATTCGGAATGAATGAATGGAGAAGGCATTATCGCGAACAACTTCT GCAGCACATGGTTCGTTCCGTAGTTATGGTCAGATCACAAACTGATGATG TCGGATATGGAGTAATGGTTGATTCAGTGTCAGCTGGACCAGGCACCCAT ACTTTTGAGTCTTACTTGATTCTCGACGATGAGGTCAACGTGGAAAAAGC GGCATCAAAGTGCGAAGGAAAGCAATGCAAGATTGTGCTCGCATCTACAA AAGGTGACTTGCTTGACGTGCATGTGTTAGCTCTCGGCAACAAGGTGAGC TTTCGAGTAGAACAGTTCGATGGACACAAAAGACTCATCGTCAAGAGTGT TCGGGAGGCTTCCGAAGAGCTTTGGATGGCGTTCTGTCCTCGATCCAGAG ATCCCAACGACTTTAGCATGGCTCGTGAAGGTAACTATGTTAAGTTTTCG ACACAGGGTAGCATTCATTCTTTCCGAGTGCGCGACTCGGACCACACTGT GATTGAGAGGCGATGA back to top
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