Gcaud194.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud194.t1
Unique NameGcaud194.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4412_length_2291_cov_4.097273contigNODE_4412_length_2291_cov_4.097273:1793..2251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud194Gcaud194Gracilaria caudata M_176_S67 malegeneNODE_4412_length_2291_cov_4.097273 1793..2251 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud194.t1.stop1Gcaud194.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4412_length_2291_cov_4.097273 1793..1795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud194.t1.CDS1Gcaud194.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4412_length_2291_cov_4.097273 1793..2251 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud194.t1.exon1Gcaud194.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4412_length_2291_cov_4.097273 1793..2251 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud194.t1.start1Gcaud194.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4412_length_2291_cov_4.097273 2249..2251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud194.t1Gcaud194.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4412_length_2291_cov_4.097273 1793..2251 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud194.t1 ID=Gcaud194.t1|Name=Gcaud194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=153bp
MVTGSTSQKWAAALLGQDEPDLIEEFSWNMGCKYNPGWSMALPLSYNDGR
DMVLTVKTNKTASHSIYVCTTAAVKAKFGVEESGLHVFDTPYNWIEFSIW
DGTTWGLDMTPKAYEEHYWYKLTLSISPDDVGRSVQLKANAQEDFSCWIF
KD*
back to top

spliced messenger RNA

>Gcaud194.t1 ID=Gcaud194.t1|Name=Gcaud194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_4412_length_2291_cov_4.097273:1793..2251- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACGGGGTCGACATCGCAAAAGTGGGCCGCGGCGTTGTTAGGGCA
GGACGAACCAGACCTGATTGAGGAGTTCTCGTGGAACATGGGGTGCAAGT
ACAATCCTGGGTGGTCGATGGCATTGCCGCTGAGCTACAACGACGGAAGG
GACATGGTACTGACGGTGAAAACGAACAAGACCGCGTCGCACTCGATATA
TGTGTGCACGACGGCAGCGGTGAAGGCGAAGTTTGGCGTGGAGGAGAGCG
GGTTGCACGTCTTTGACACACCGTACAATTGGATAGAATTCTCGATATGG
GACGGGACCACGTGGGGGCTGGACATGACTCCCAAGGCGTATGAGGAGCA
CTACTGGTATAAGTTGACACTAAGTATTAGCCCGGACGACGTCGGTCGCA
GCGTGCAGCTCAAGGCAAATGCGCAGGAGGACTTTTCGTGCTGGATCTTC
AAAGATTGA
back to top

protein sequence of Gcaud194.t1

>Gcaud194.t1 ID=Gcaud194.t1|Name=Gcaud194.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bp
MVTGSTSQKWAAALLGQDEPDLIEEFSWNMGCKYNPGWSMALPLSYNDGR
DMVLTVKTNKTASHSIYVCTTAAVKAKFGVEESGLHVFDTPYNWIEFSIW
DGTTWGLDMTPKAYEEHYWYKLTLSISPDDVGRSVQLKANAQEDFSCWIF
KD*
back to top

mRNA from alignment at NODE_4412_length_2291_cov_4.097273:1793..2251-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud194.t1 ID=Gcaud194.t1|Name=Gcaud194.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_4412_length_2291_cov_4.097273:1793..2251- (Gracilaria caudata M_176_S67 male)
ATGGTAACGGGGTCGACATCGCAAAAGTGGGCCGCGGCGTTGTTAGGGCA
GGACGAACCAGACCTGATTGAGGAGTTCTCGTGGAACATGGGGTGCAAGT
ACAATCCTGGGTGGTCGATGGCATTGCCGCTGAGCTACAACGACGGAAGG
GACATGGTACTGACGGTGAAAACGAACAAGACCGCGTCGCACTCGATATA
TGTGTGCACGACGGCAGCGGTGAAGGCGAAGTTTGGCGTGGAGGAGAGCG
GGTTGCACGTCTTTGACACACCGTACAATTGGATAGAATTCTCGATATGG
GACGGGACCACGTGGGGGCTGGACATGACTCCCAAGGCGTATGAGGAGCA
CTACTGGTATAAGTTGACACTAAGTATTAGCCCGGACGACGTCGGTCGCA
GCGTGCAGCTCAAGGCAAATGCGCAGGAGGACTTTTCGTGCTGGATCTTC
AAAGATTGA
back to top

Coding sequence (CDS) from alignment at NODE_4412_length_2291_cov_4.097273:1793..2251-

>Gcaud194.t1 ID=Gcaud194.t1|Name=Gcaud194.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=459bp|location=Sequence derived from alignment at NODE_4412_length_2291_cov_4.097273:1793..2251- (Gracilaria caudata M_176_S67 male)
ATGGTAACGGGGTCGACATCGCAAAAGTGGGCCGCGGCGTTGTTAGGGCA
GGACGAACCAGACCTGATTGAGGAGTTCTCGTGGAACATGGGGTGCAAGT
ACAATCCTGGGTGGTCGATGGCATTGCCGCTGAGCTACAACGACGGAAGG
GACATGGTACTGACGGTGAAAACGAACAAGACCGCGTCGCACTCGATATA
TGTGTGCACGACGGCAGCGGTGAAGGCGAAGTTTGGCGTGGAGGAGAGCG
GGTTGCACGTCTTTGACACACCGTACAATTGGATAGAATTCTCGATATGG
GACGGGACCACGTGGGGGCTGGACATGACTCCCAAGGCGTATGAGGAGCA
CTACTGGTATAAGTTGACACTAAGTATTAGCCCGGACGACGTCGGTCGCA
GCGTGCAGCTCAAGGCAAATGCGCAGGAGGACTTTTCGTGCTGGATCTTC
AAAGATTGA
back to top