Gcaud1909.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1909.t1
Unique Name	Gcaud1909.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_927_length_16063_cov_4.587278	contig	NODE_927_length_16063_cov_4.587278:4606..5583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	936053.I1CNL2
PFAMs	EamA
Max annot lvl	4751\|Fungi
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue	2.49e-26
EggNOG OGs	COG0697@1\|root,KOG4510@2759\|Eukaryota,395GA@33154\|Opisthokonta,3NUM2@4751\|Fungi,1GSM9@112252\|Fungi incertae sedis
Description	EamA-like transporter family
COG category	EG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1909	Gcaud1909	Gracilaria caudata M_176_S67 male	gene	NODE_927_length_16063_cov_4.587278 4606..5583 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1909.t1.start1	Gcaud1909.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_927_length_16063_cov_4.587278 4606..4608 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1909.t1.CDS1	Gcaud1909.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_927_length_16063_cov_4.587278 4606..5583 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1909.t1.exon1	Gcaud1909.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_927_length_16063_cov_4.587278 4606..5583 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1909.t1.stop1	Gcaud1909.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_927_length_16063_cov_4.587278 5581..5583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1909.t1	Gcaud1909.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_927_length_16063_cov_4.587278 4606..5583 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+
coding sequence from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+

mRNA sequence

>Gcaud1909.t1 ID=Gcaud1909.t1|Name=Gcaud1909.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp
MGIHHKPPAETDPLISTVPKTSYLTPLNPSLNQLRTEIYGLLWILLSAIA
YPIPTVLVRVAFMHFDFPVSAAMILRTGTQFLFATILLLTVIRASPLDLS
PQHQAVLFLRGALGTIALVAVYKALTLLPAGDVTAVLAFTPIVTMLLSKL
ILKEKATLWDIACSILGIIGVWFIACPRAETESMLGVALVLLASCSASSA
YICVRGMGTNVHFMLCVFAFGGIGLLATLFLGGWEAIHQIVTNYKGAGVI
LVGCIAGFVGQCCVNRGLQLCRAGEAIIVTNLEVPLSYFLSMWLLDEKPN
LLRIVGSMLVVSAVVTVGVQRLREH*

spliced messenger RNA

>Gcaud1909.t1 ID=Gcaud1909.t1|Name=Gcaud1909.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGATACATCATAAACCACCAGCCGAGACTGACCCTCTTATATCAAC
CGTTCCGAAAACTTCTTACTTGACGCCATTAAATCCAAGCTTGAATCAAT
TGAGAACCGAAATATATGGGTTACTTTGGATACTTCTTTCTGCGATTGCG
TATCCGATTCCGACTGTGCTTGTACGGGTAGCCTTCATGCACTTTGATTT
TCCCGTTTCGGCAGCCATGATTCTTCGCACTGGTACTCAATTTCTCTTTG
CAACGATTCTTCTCTTAACGGTCATCCGTGCCTCCCCATTAGATCTATCA
CCACAACACCAAGCTGTATTATTTCTCCGAGGTGCTCTGGGTACCATAGC
ACTTGTAGCCGTTTACAAAGCTTTGACGCTTCTGCCCGCCGGTGATGTGA
CTGCAGTACTCGCCTTTACTCCTATCGTAACTATGCTCTTGTCCAAGTTG
ATACTGAAAGAAAAAGCAACTCTCTGGGATATTGCTTGTTCAATTCTTGG
CATAATTGGCGTCTGGTTCATCGCATGTCCAAGAGCCGAGACAGAAAGCA
TGCTGGGTGTGGCGCTGGTTCTCCTCGCATCCTGCTCGGCATCATCAGCT
TACATATGTGTTCGGGGGATGGGGACGAATGTGCATTTCATGCTCTGTGT
GTTTGCCTTTGGTGGTATCGGCCTACTTGCGACTTTATTTCTCGGCGGAT
GGGAAGCAATCCACCAAATCGTCACAAACTACAAAGGTGCGGGTGTTATC
CTTGTCGGATGCATAGCAGGATTCGTGGGTCAGTGTTGTGTCAATAGGGG
TCTCCAGCTTTGCAGAGCCGGGGAGGCGATTATCGTGACGAATTTAGAGG
TGCCTCTTTCATACTTTCTGAGCATGTGGCTTCTGGACGAAAAACCAAAC
CTCTTACGAATCGTTGGGTCGATGCTTGTTGTTTCTGCGGTCGTCACGGT
TGGTGTGCAGCGCCTAAGAGAGCACTAA

protein sequence of Gcaud1909.t1

>Gcaud1909.t1 ID=Gcaud1909.t1|Name=Gcaud1909.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=326bp
MGIHHKPPAETDPLISTVPKTSYLTPLNPSLNQLRTEIYGLLWILLSAIA
YPIPTVLVRVAFMHFDFPVSAAMILRTGTQFLFATILLLTVIRASPLDLS
PQHQAVLFLRGALGTIALVAVYKALTLLPAGDVTAVLAFTPIVTMLLSKL
ILKEKATLWDIACSILGIIGVWFIACPRAETESMLGVALVLLASCSASSA
YICVRGMGTNVHFMLCVFAFGGIGLLATLFLGGWEAIHQIVTNYKGAGVI
LVGCIAGFVGQCCVNRGLQLCRAGEAIIVTNLEVPLSYFLSMWLLDEKPN
LLRIVGSMLVVSAVVTVGVQRLREH*

mRNA from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1909.t1 ID=Gcaud1909.t1|Name=Gcaud1909.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=978bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+ (Gracilaria caudata M_176_S67 male)
ATGGGGATACATCATAAACCACCAGCCGAGACTGACCCTCTTATATCAAC
CGTTCCGAAAACTTCTTACTTGACGCCATTAAATCCAAGCTTGAATCAAT
TGAGAACCGAAATATATGGGTTACTTTGGATACTTCTTTCTGCGATTGCG
TATCCGATTCCGACTGTGCTTGTACGGGTAGCCTTCATGCACTTTGATTT
TCCCGTTTCGGCAGCCATGATTCTTCGCACTGGTACTCAATTTCTCTTTG
CAACGATTCTTCTCTTAACGGTCATCCGTGCCTCCCCATTAGATCTATCA
CCACAACACCAAGCTGTATTATTTCTCCGAGGTGCTCTGGGTACCATAGC
ACTTGTAGCCGTTTACAAAGCTTTGACGCTTCTGCCCGCCGGTGATGTGA
CTGCAGTACTCGCCTTTACTCCTATCGTAACTATGCTCTTGTCCAAGTTG
ATACTGAAAGAAAAAGCAACTCTCTGGGATATTGCTTGTTCAATTCTTGG
CATAATTGGCGTCTGGTTCATCGCATGTCCAAGAGCCGAGACAGAAAGCA
TGCTGGGTGTGGCGCTGGTTCTCCTCGCATCCTGCTCGGCATCATCAGCT
TACATATGTGTTCGGGGGATGGGGACGAATGTGCATTTCATGCTCTGTGT
GTTTGCCTTTGGTGGTATCGGCCTACTTGCGACTTTATTTCTCGGCGGAT
GGGAAGCAATCCACCAAATCGTCACAAACTACAAAGGTGCGGGTGTTATC
CTTGTCGGATGCATAGCAGGATTCGTGGGTCAGTGTTGTGTCAATAGGGG
TCTCCAGCTTTGCAGAGCCGGGGAGGCGATTATCGTGACGAATTTAGAGG
TGCCTCTTTCATACTTTCTGAGCATGTGGCTTCTGGACGAAAAACCAAAC
CTCTTACGAATCGTTGGGTCGATGCTTGTTGTTTCTGCGGTCGTCACGGT
TGGTGTGCAGCGCCTAAGAGAGCACTAA

Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+

>Gcaud1909.t1 ID=Gcaud1909.t1|Name=Gcaud1909.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=978bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:4606..5583+ (Gracilaria caudata M_176_S67 male)
ATGGGGATACATCATAAACCACCAGCCGAGACTGACCCTCTTATATCAAC
CGTTCCGAAAACTTCTTACTTGACGCCATTAAATCCAAGCTTGAATCAAT
TGAGAACCGAAATATATGGGTTACTTTGGATACTTCTTTCTGCGATTGCG
TATCCGATTCCGACTGTGCTTGTACGGGTAGCCTTCATGCACTTTGATTT
TCCCGTTTCGGCAGCCATGATTCTTCGCACTGGTACTCAATTTCTCTTTG
CAACGATTCTTCTCTTAACGGTCATCCGTGCCTCCCCATTAGATCTATCA
CCACAACACCAAGCTGTATTATTTCTCCGAGGTGCTCTGGGTACCATAGC
ACTTGTAGCCGTTTACAAAGCTTTGACGCTTCTGCCCGCCGGTGATGTGA
CTGCAGTACTCGCCTTTACTCCTATCGTAACTATGCTCTTGTCCAAGTTG
ATACTGAAAGAAAAAGCAACTCTCTGGGATATTGCTTGTTCAATTCTTGG
CATAATTGGCGTCTGGTTCATCGCATGTCCAAGAGCCGAGACAGAAAGCA
TGCTGGGTGTGGCGCTGGTTCTCCTCGCATCCTGCTCGGCATCATCAGCT
TACATATGTGTTCGGGGGATGGGGACGAATGTGCATTTCATGCTCTGTGT
GTTTGCCTTTGGTGGTATCGGCCTACTTGCGACTTTATTTCTCGGCGGAT
GGGAAGCAATCCACCAAATCGTCACAAACTACAAAGGTGCGGGTGTTATC
CTTGTCGGATGCATAGCAGGATTCGTGGGTCAGTGTTGTGTCAATAGGGG
TCTCCAGCTTTGCAGAGCCGGGGAGGCGATTATCGTGACGAATTTAGAGG
TGCCTCTTTCATACTTTCTGAGCATGTGGCTTCTGGACGAAAAACCAAAC
CTCTTACGAATCGTTGGGTCGATGCTTGTTGTTTCTGCGGTCGTCACGGT
TGGTGTGCAGCGCCTAAGAGAGCACTAA