Gcaud1908.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1908.t1
Unique NameGcaud1908.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length289
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_927_length_16063_cov_4.587278contigNODE_927_length_16063_cov_4.587278:3073..4072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2J4S7
PFAMsEamA
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0016020,GO:0016021,GO:0031224,GO:0044424,GO:0044425,GO:0044464
Evalue1.07e-22
EggNOG OGsCOG0697@1|root,KOG4510@2759|Eukaryota,395GA@33154|Opisthokonta,3NUM2@4751|Fungi,1GSM9@112252|Fungi incertae sedis
DescriptionEamA-like transporter family
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1908Gcaud1908Gracilaria caudata M_176_S67 malegeneNODE_927_length_16063_cov_4.587278 3073..4072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1Gcaud1908.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_927_length_16063_cov_4.587278 3073..4072 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1.start1Gcaud1908.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_927_length_16063_cov_4.587278 3073..3075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1.CDS1Gcaud1908.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 3073..3544 +
Gcaud1908.t1.CDS2Gcaud1908.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 3678..4072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1.exon1Gcaud1908.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 3073..3544 +
Gcaud1908.t1.exon2Gcaud1908.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 3678..4072 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1.intron1Gcaud1908.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_927_length_16063_cov_4.587278 3545..3677 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1908.t1.stop1Gcaud1908.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_927_length_16063_cov_4.587278 4070..4072 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1908.t1 ID=Gcaud1908.t1|Name=Gcaud1908.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=289bp
MTSADVQFGSRPRSERDPLLPQKEETSQACAPQSEDTTIAFQGLIWIALA
ALGFSFMPTAVRLSVSRFDFSTSAAVLLRSIVHLVLSSVALRNFIHISPL
DLNPSYRGLLAARGLFGTIAMILVFKSLAHLPAGQCTAVFSFSPIFTMFL
SKLFLPRGFAAAAYVCVRGMGTEVHFMLSVFALGILGVPVTGVLGGKEAF
RQIWSNHKGTGIVFVGSLAAFFAQSCLNKGLQLCKAGEGVIVKNLEVPSA
YLFGMLVLNERPSVLRLTGSAVVVSAVIVVGIRRLTGR*
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spliced messenger RNA

>Gcaud1908.t1 ID=Gcaud1908.t1|Name=Gcaud1908.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=867bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:3073..4072+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCGGCTGACGTTCAGTTCGGCTCAAGACCGCGCAGTGAGAGAGA
TCCTCTTCTCCCACAAAAAGAAGAGACCTCTCAAGCCTGTGCTCCGCAAT
CTGAAGATACTACCATTGCTTTCCAAGGCTTAATCTGGATTGCACTCGCA
GCTTTGGGCTTCTCCTTCATGCCCACCGCTGTTCGCCTAAGCGTATCTCG
ATTCGACTTTTCAACATCAGCTGCCGTGCTCTTGCGCTCTATCGTGCATT
TGGTTCTCTCAAGCGTCGCGCTACGAAACTTCATTCATATATCTCCTCTA
GATCTGAACCCTTCGTATCGCGGTTTATTGGCTGCTCGAGGGCTGTTCGG
AACAATTGCGATGATTCTGGTTTTCAAGTCTTTAGCGCACTTGCCTGCAG
GCCAGTGCACTGCTGTATTCTCCTTCAGTCCTATTTTTACAATGTTCCTG
TCAAAGTTGTTCTTACCCAGGGGCTTTGCCGCCGCAGCATATGTTTGCGT
TCGCGGAATGGGGACGGAAGTACATTTTATGCTTTCTGTATTTGCACTTG
GCATACTAGGCGTGCCAGTTACAGGCGTTCTCGGAGGCAAGGAAGCCTTT
CGTCAAATATGGTCCAACCACAAAGGAACCGGCATCGTTTTCGTCGGATC
CTTGGCAGCCTTTTTCGCGCAGAGCTGTCTTAACAAGGGCCTTCAGTTAT
GCAAAGCAGGTGAAGGTGTGATTGTGAAGAACCTAGAAGTACCTTCTGCT
TATCTGTTTGGCATGTTGGTGCTGAACGAGAGGCCAAGCGTGTTAAGATT
GACAGGGTCTGCAGTGGTCGTGTCTGCAGTAATTGTCGTCGGTATTCGAA
GACTAACCGGCAGGTAA
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protein sequence of Gcaud1908.t1

>Gcaud1908.t1 ID=Gcaud1908.t1|Name=Gcaud1908.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=289bp
MTSADVQFGSRPRSERDPLLPQKEETSQACAPQSEDTTIAFQGLIWIALA
ALGFSFMPTAVRLSVSRFDFSTSAAVLLRSIVHLVLSSVALRNFIHISPL
DLNPSYRGLLAARGLFGTIAMILVFKSLAHLPAGQCTAVFSFSPIFTMFL
SKLFLPRGFAAAAYVCVRGMGTEVHFMLSVFALGILGVPVTGVLGGKEAF
RQIWSNHKGTGIVFVGSLAAFFAQSCLNKGLQLCKAGEGVIVKNLEVPSA
YLFGMLVLNERPSVLRLTGSAVVVSAVIVVGIRRLTGR*
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mRNA from alignment at NODE_927_length_16063_cov_4.587278:3073..4072+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1908.t1 ID=Gcaud1908.t1|Name=Gcaud1908.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1000bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:3073..4072+ (Gracilaria caudata M_176_S67 male)
ATGACGTCGGCTGACGTTCAGTTCGGCTCAAGACCGCGCAGTGAGAGAGA
TCCTCTTCTCCCACAAAAAGAAGAGACCTCTCAAGCCTGTGCTCCGCAAT
CTGAAGATACTACCATTGCTTTCCAAGGCTTAATCTGGATTGCACTCGCA
GCTTTGGGCTTCTCCTTCATGCCCACCGCTGTTCGCCTAAGCGTATCTCG
ATTCGACTTTTCAACATCAGCTGCCGTGCTCTTGCGCTCTATCGTGCATT
TGGTTCTCTCAAGCGTCGCGCTACGAAACTTCATTCATATATCTCCTCTA
GATCTGAACCCTTCGTATCGCGGTTTATTGGCTGCTCGAGGGCTGTTCGG
AACAATTGCGATGATTCTGGTTTTCAAGTCTTTAGCGCACTTGCCTGCAG
GCCAGTGCACTGCTGTATTCTCCTTCAGTCCTATTTTTACAATGTTCCTG
TCAAAGTTGTTCTTACCCAGGGGTAAACGAAACAACCAACATCTGGGACA
TATTTTGCGGCGTTGTCGGAGTGGTCGGAATATGGATGATCGCAACCCCG
AGCACAAGCGGTGATCAACATGTCGTAGGCGTAGTCTTGGTTTTCTTTGC
AGCAGGCTTTGCCGCCGCAGCATATGTTTGCGTTCGCGGAATGGGGACGG
AAGTACATTTTATGCTTTCTGTATTTGCACTTGGCATACTAGGCGTGCCA
GTTACAGGCGTTCTCGGAGGCAAGGAAGCCTTTCGTCAAATATGGTCCAA
CCACAAAGGAACCGGCATCGTTTTCGTCGGATCCTTGGCAGCCTTTTTCG
CGCAGAGCTGTCTTAACAAGGGCCTTCAGTTATGCAAAGCAGGTGAAGGT
GTGATTGTGAAGAACCTAGAAGTACCTTCTGCTTATCTGTTTGGCATGTT
GGTGCTGAACGAGAGGCCAAGCGTGTTAAGATTGACAGGGTCTGCAGTGG
TCGTGTCTGCAGTAATTGTCGTCGGTATTCGAAGACTAACCGGCAGGTAA
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Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:3073..4072+

>Gcaud1908.t1 ID=Gcaud1908.t1|Name=Gcaud1908.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=867bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:3073..4072+ (Gracilaria caudata M_176_S67 male)
ATGACGTCGGCTGACGTTCAGTTCGGCTCAAGACCGCGCAGTGAGAGAGA
TCCTCTTCTCCCACAAAAAGAAGAGACCTCTCAAGCCTGTGCTCCGCAAT
CTGAAGATACTACCATTGCTTTCCAAGGCTTAATCTGGATTGCACTCGCA
GCTTTGGGCTTCTCCTTCATGCCCACCGCTGTTCGCCTAAGCGTATCTCG
ATTCGACTTTTCAACATCAGCTGCCGTGCTCTTGCGCTCTATCGTGCATT
TGGTTCTCTCAAGCGTCGCGCTACGAAACTTCATTCATATATCTCCTCTA
GATCTGAACCCTTCGTATCGCGGTTTATTGGCTGCTCGAGGGCTGTTCGG
AACAATTGCGATGATTCTGGTTTTCAAGTCTTTAGCGCACTTGCCTGCAG
GCCAGTGCACTGCTGTATTCTCCTTCAGTCCTATTTTTACAATGTTCCTG
TCAAAGTTGTTCTTACCCAGGGGCTTTGCCGCCGCAGCATATGTTTGCGT
TCGCGGAATGGGGACGGAAGTACATTTTATGCTTTCTGTATTTGCACTTG
GCATACTAGGCGTGCCAGTTACAGGCGTTCTCGGAGGCAAGGAAGCCTTT
CGTCAAATATGGTCCAACCACAAAGGAACCGGCATCGTTTTCGTCGGATC
CTTGGCAGCCTTTTTCGCGCAGAGCTGTCTTAACAAGGGCCTTCAGTTAT
GCAAAGCAGGTGAAGGTGTGATTGTGAAGAACCTAGAAGTACCTTCTGCT
TATCTGTTTGGCATGTTGGTGCTGAACGAGAGGCCAAGCGTGTTAAGATT
GACAGGGTCTGCAGTGGTCGTGTCTGCAGTAATTGTCGTCGGTATTCGAA
GACTAACCGGCAGGTAA
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