Gcaud1873.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1873.t1
Unique Name	Gcaud1873.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_823_length_17514_cov_4.507834	contig	NODE_823_length_17514_cov_4.507834:5579..7081 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1056512.D515_03350
Max annot lvl	135623\|Vibrionales
Evalue	1.02e-143
EggNOG OGs	COG0543@1\|root,COG0543@2\|Bacteria,1PGWQ@1224\|Proteobacteria,1RV2N@1236\|Gammaproteobacteria,1XU9U@135623\|Vibrionales
Description	2 iron, 2 sulfur cluster binding
COG category	CH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1873	Gcaud1873	Gracilaria caudata M_176_S67 male	gene	NODE_823_length_17514_cov_4.507834 5579..7081 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1873.t1.start1	Gcaud1873.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_823_length_17514_cov_4.507834 5579..5581 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1873.t1.CDS1	Gcaud1873.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_823_length_17514_cov_4.507834 5579..7081 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1873.t1.exon1	Gcaud1873.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_823_length_17514_cov_4.507834 5579..7081 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1873.t1.stop1	Gcaud1873.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_823_length_17514_cov_4.507834 7079..7081 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1873.t1	Gcaud1873.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_823_length_17514_cov_4.507834 5579..7081 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+
coding sequence from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+

mRNA sequence

>Gcaud1873.t1 ID=Gcaud1873.t1|Name=Gcaud1873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MCGVSITLPPPAAKAKSRQESDSSTTYTVDTVDTVELAKAANHEPNPTHF
SQQHPAQPEEDPEKYKLPQKRPKYKRVFHLPILSTYRRLIALTVLINLAL
LALGIVLRWYNNLPAIAYLVISNVTVTVLIRQQRLINLLFFLATCTKTRL
PLKVRWMLGKIYHFGGLHSACAVSATVWLLLFTISATVLRSTDSPNAPSE
LLLMLTLFIDALLVTIAILALPRFRSRFHNTFEATHRFLGWTALFFVWLH
TIFLIRDFKQPTQPLVQAFFKSVSPYLLILITLSIVSPWLYLRKVPVSIT
KPSNHAIIVNFEKGVLKAFPGSSSAISLAPLYEWHSFANICAPGKDGFRL
VISRAGDWTSSVIDNPPSHFWVRGIPTAGVANMETLFHRVLYVATGSGIG
PVLPHLLQKRVPSQLFWSTRTPEVTYGRELVEEIMRASPDAVIHDTTLLG
KPDMVQKSYNLCMESGAEAVIVISNQKLTRKMVYGMEARGIPAFGAIWDS
*

spliced messenger RNA

>Gcaud1873.t1 ID=Gcaud1873.t1|Name=Gcaud1873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGGCGTTTCCATAACTCTACCACCTCCGGCGGCCAAGGCCAAATC
TCGCCAAGAATCAGACTCCTCTACAACTTACACAGTCGATACGGTAGACA
CCGTCGAGCTCGCCAAGGCCGCCAACCACGAGCCCAACCCCACTCACTTC
TCTCAACAGCATCCTGCACAACCAGAAGAAGACCCTGAGAAATACAAGCT
TCCACAGAAGCGGCCAAAATACAAGCGAGTCTTTCATCTTCCCATCTTAT
CTACTTATCGTCGCCTAATTGCGCTCACCGTCCTCATCAATCTCGCGTTG
CTCGCGCTAGGCATTGTTCTCCGATGGTACAACAATTTGCCCGCCATTGC
ATATCTCGTCATCTCCAATGTCACCGTCACAGTTCTCATTCGCCAGCAAA
GACTGATCAATCTGCTCTTCTTCTTAGCCACTTGTACAAAGACACGTCTC
CCACTCAAGGTCCGATGGATGCTGGGCAAGATTTATCATTTCGGCGGACT
GCACAGTGCGTGTGCCGTATCGGCCACCGTTTGGTTGCTTCTGTTTACCA
TTTCGGCAACCGTCCTGCGCTCAACAGATTCCCCCAACGCTCCCTCCGAG
TTGCTGCTCATGCTCACCCTCTTCATCGACGCACTTCTTGTCACCATCGC
TATCCTGGCGCTTCCGAGATTCCGTTCAAGGTTTCACAATACGTTCGAGG
CCACCCATCGCTTCTTGGGTTGGACCGCTTTATTCTTTGTATGGCTGCAC
ACCATTTTCCTCATCCGTGACTTTAAGCAGCCCACACAGCCACTTGTCCA
AGCATTCTTCAAGAGCGTTTCGCCATACCTGCTAATACTCATCACCCTGT
CCATCGTCTCACCTTGGCTATACCTTCGCAAGGTTCCGGTATCAATCACC
AAGCCATCAAACCATGCCATCATCGTAAACTTCGAAAAAGGCGTTCTGAA
GGCCTTCCCAGGATCATCATCAGCTATATCATTGGCACCACTGTACGAGT
GGCATTCTTTCGCAAATATATGCGCTCCTGGAAAAGACGGCTTCCGCCTC
GTGATATCCCGGGCAGGCGATTGGACTTCGTCGGTGATTGACAACCCACC
ATCCCATTTCTGGGTGCGTGGCATCCCGACTGCCGGGGTGGCAAACATGG
AAACTCTGTTTCACAGGGTATTATATGTTGCAACTGGTTCAGGTATTGGT
CCTGTGCTGCCACACTTGCTTCAAAAGAGAGTTCCTTCTCAGCTTTTTTG
GTCCACTAGAACCCCAGAGGTTACATACGGCCGAGAACTAGTTGAAGAGA
TTATGCGTGCAAGCCCTGATGCGGTTATCCATGACACCACACTTCTTGGC
AAACCGGACATGGTTCAGAAGTCATACAATCTATGCATGGAAAGCGGTGC
GGAGGCTGTTATCGTGATCTCCAACCAGAAGCTGACTCGAAAGATGGTGT
ACGGAATGGAAGCGCGTGGCATTCCTGCCTTTGGCGCCATATGGGACTCA
TGA

protein sequence of Gcaud1873.t1

>Gcaud1873.t1 ID=Gcaud1873.t1|Name=Gcaud1873.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MCGVSITLPPPAAKAKSRQESDSSTTYTVDTVDTVELAKAANHEPNPTHF
SQQHPAQPEEDPEKYKLPQKRPKYKRVFHLPILSTYRRLIALTVLINLAL
LALGIVLRWYNNLPAIAYLVISNVTVTVLIRQQRLINLLFFLATCTKTRL
PLKVRWMLGKIYHFGGLHSACAVSATVWLLLFTISATVLRSTDSPNAPSE
LLLMLTLFIDALLVTIAILALPRFRSRFHNTFEATHRFLGWTALFFVWLH
TIFLIRDFKQPTQPLVQAFFKSVSPYLLILITLSIVSPWLYLRKVPVSIT
KPSNHAIIVNFEKGVLKAFPGSSSAISLAPLYEWHSFANICAPGKDGFRL
VISRAGDWTSSVIDNPPSHFWVRGIPTAGVANMETLFHRVLYVATGSGIG
PVLPHLLQKRVPSQLFWSTRTPEVTYGRELVEEIMRASPDAVIHDTTLLG
KPDMVQKSYNLCMESGAEAVIVISNQKLTRKMVYGMEARGIPAFGAIWDS
*

mRNA from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1873.t1 ID=Gcaud1873.t1|Name=Gcaud1873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+ (Gracilaria caudata M_176_S67 male)
ATGTGTGGCGTTTCCATAACTCTACCACCTCCGGCGGCCAAGGCCAAATC
TCGCCAAGAATCAGACTCCTCTACAACTTACACAGTCGATACGGTAGACA
CCGTCGAGCTCGCCAAGGCCGCCAACCACGAGCCCAACCCCACTCACTTC
TCTCAACAGCATCCTGCACAACCAGAAGAAGACCCTGAGAAATACAAGCT
TCCACAGAAGCGGCCAAAATACAAGCGAGTCTTTCATCTTCCCATCTTAT
CTACTTATCGTCGCCTAATTGCGCTCACCGTCCTCATCAATCTCGCGTTG
CTCGCGCTAGGCATTGTTCTCCGATGGTACAACAATTTGCCCGCCATTGC
ATATCTCGTCATCTCCAATGTCACCGTCACAGTTCTCATTCGCCAGCAAA
GACTGATCAATCTGCTCTTCTTCTTAGCCACTTGTACAAAGACACGTCTC
CCACTCAAGGTCCGATGGATGCTGGGCAAGATTTATCATTTCGGCGGACT
GCACAGTGCGTGTGCCGTATCGGCCACCGTTTGGTTGCTTCTGTTTACCA
TTTCGGCAACCGTCCTGCGCTCAACAGATTCCCCCAACGCTCCCTCCGAG
TTGCTGCTCATGCTCACCCTCTTCATCGACGCACTTCTTGTCACCATCGC
TATCCTGGCGCTTCCGAGATTCCGTTCAAGGTTTCACAATACGTTCGAGG
CCACCCATCGCTTCTTGGGTTGGACCGCTTTATTCTTTGTATGGCTGCAC
ACCATTTTCCTCATCCGTGACTTTAAGCAGCCCACACAGCCACTTGTCCA
AGCATTCTTCAAGAGCGTTTCGCCATACCTGCTAATACTCATCACCCTGT
CCATCGTCTCACCTTGGCTATACCTTCGCAAGGTTCCGGTATCAATCACC
AAGCCATCAAACCATGCCATCATCGTAAACTTCGAAAAAGGCGTTCTGAA
GGCCTTCCCAGGATCATCATCAGCTATATCATTGGCACCACTGTACGAGT
GGCATTCTTTCGCAAATATATGCGCTCCTGGAAAAGACGGCTTCCGCCTC
GTGATATCCCGGGCAGGCGATTGGACTTCGTCGGTGATTGACAACCCACC
ATCCCATTTCTGGGTGCGTGGCATCCCGACTGCCGGGGTGGCAAACATGG
AAACTCTGTTTCACAGGGTATTATATGTTGCAACTGGTTCAGGTATTGGT
CCTGTGCTGCCACACTTGCTTCAAAAGAGAGTTCCTTCTCAGCTTTTTTG
GTCCACTAGAACCCCAGAGGTTACATACGGCCGAGAACTAGTTGAAGAGA
TTATGCGTGCAAGCCCTGATGCGGTTATCCATGACACCACACTTCTTGGC
AAACCGGACATGGTTCAGAAGTCATACAATCTATGCATGGAAAGCGGTGC
GGAGGCTGTTATCGTGATCTCCAACCAGAAGCTGACTCGAAAGATGGTGT
ACGGAATGGAAGCGCGTGGCATTCCTGCCTTTGGCGCCATATGGGACTCA
TGA

Coding sequence (CDS) from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+

>Gcaud1873.t1 ID=Gcaud1873.t1|Name=Gcaud1873.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_823_length_17514_cov_4.507834:5579..7081+ (Gracilaria caudata M_176_S67 male)
ATGTGTGGCGTTTCCATAACTCTACCACCTCCGGCGGCCAAGGCCAAATC
TCGCCAAGAATCAGACTCCTCTACAACTTACACAGTCGATACGGTAGACA
CCGTCGAGCTCGCCAAGGCCGCCAACCACGAGCCCAACCCCACTCACTTC
TCTCAACAGCATCCTGCACAACCAGAAGAAGACCCTGAGAAATACAAGCT
TCCACAGAAGCGGCCAAAATACAAGCGAGTCTTTCATCTTCCCATCTTAT
CTACTTATCGTCGCCTAATTGCGCTCACCGTCCTCATCAATCTCGCGTTG
CTCGCGCTAGGCATTGTTCTCCGATGGTACAACAATTTGCCCGCCATTGC
ATATCTCGTCATCTCCAATGTCACCGTCACAGTTCTCATTCGCCAGCAAA
GACTGATCAATCTGCTCTTCTTCTTAGCCACTTGTACAAAGACACGTCTC
CCACTCAAGGTCCGATGGATGCTGGGCAAGATTTATCATTTCGGCGGACT
GCACAGTGCGTGTGCCGTATCGGCCACCGTTTGGTTGCTTCTGTTTACCA
TTTCGGCAACCGTCCTGCGCTCAACAGATTCCCCCAACGCTCCCTCCGAG
TTGCTGCTCATGCTCACCCTCTTCATCGACGCACTTCTTGTCACCATCGC
TATCCTGGCGCTTCCGAGATTCCGTTCAAGGTTTCACAATACGTTCGAGG
CCACCCATCGCTTCTTGGGTTGGACCGCTTTATTCTTTGTATGGCTGCAC
ACCATTTTCCTCATCCGTGACTTTAAGCAGCCCACACAGCCACTTGTCCA
AGCATTCTTCAAGAGCGTTTCGCCATACCTGCTAATACTCATCACCCTGT
CCATCGTCTCACCTTGGCTATACCTTCGCAAGGTTCCGGTATCAATCACC
AAGCCATCAAACCATGCCATCATCGTAAACTTCGAAAAAGGCGTTCTGAA
GGCCTTCCCAGGATCATCATCAGCTATATCATTGGCACCACTGTACGAGT
GGCATTCTTTCGCAAATATATGCGCTCCTGGAAAAGACGGCTTCCGCCTC
GTGATATCCCGGGCAGGCGATTGGACTTCGTCGGTGATTGACAACCCACC
ATCCCATTTCTGGGTGCGTGGCATCCCGACTGCCGGGGTGGCAAACATGG
AAACTCTGTTTCACAGGGTATTATATGTTGCAACTGGTTCAGGTATTGGT
CCTGTGCTGCCACACTTGCTTCAAAAGAGAGTTCCTTCTCAGCTTTTTTG
GTCCACTAGAACCCCAGAGGTTACATACGGCCGAGAACTAGTTGAAGAGA
TTATGCGTGCAAGCCCTGATGCGGTTATCCATGACACCACACTTCTTGGC
AAACCGGACATGGTTCAGAAGTCATACAATCTATGCATGGAAAGCGGTGC
GGAGGCTGTTATCGTGATCTCCAACCAGAAGCTGACTCGAAAGATGGTGT
ACGGAATGGAAGCGCGTGGCATTCCTGCCTTTGGCGCCATATGGGACTCA
TGA