Gcaud1838.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1838.t2
Unique Name	Gcaud1838.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:74439..75374 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1838	Gcaud1838	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 74439..75572 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t2.stop1	Gcaud1838.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 74439..74441 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t2.CDS1	Gcaud1838.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 74439..75374 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t2.exon1	Gcaud1838.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 74439..75374 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t2.start1	Gcaud1838.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 75372..75374 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1838.t2	Gcaud1838.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 74439..75374 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:74439..75374-
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:74439..75374-

mRNA sequence

>Gcaud1838.t2 ID=Gcaud1838.t2|Name=Gcaud1838.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
LGRRDRSNPVLEEYKRTVHATVLEKSTLHDRTGGGQSAADMVAEFGYSES
TWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAFVGYLANEGKVGPASIP
QYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRKQAANPSDRPARVGCDA
TTMRRVVEFGCECEDMQLVGACCATLFSFIFHLRSVSSNNLMRSNLSITA
TTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKNPFALVRRWLRLTRNPH
LFGISATSKPSLEESLSLALSATGIQAPSGGVYTSHSPRIGSFNELLQLG
FTRELIMHRFD*

spliced messenger RNA

>Gcaud1838.t2 ID=Gcaud1838.t2|Name=Gcaud1838.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75374- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCAC
CGTCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAG
GCGGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGT
ACGTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGA
GCTCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCT
TCGTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCC
CAGTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTC
CCCAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAA
AACAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCC
ACTACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCA
GCTCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCC
GTTCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCT
ACTACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAG
GCCGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGA
ACCCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCAC
CTGTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTC
TCTGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACA
CTTCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGA
TTCACACGTGAGCTCATCATGCACCGATTTGACTGA

protein sequence of Gcaud1838.t2

>Gcaud1838.t2 ID=Gcaud1838.t2|Name=Gcaud1838.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
LGRRDRSNPVLEEYKRTVHATVLEKSTLHDRTGGGQSAADMVAEFGYSES
TWLHRSVQLRKWFSFRELNRQPKFTTSDGDIAAFVGYLANEGKVGPASIP
QYLSAISRFHVQHNHPSPTKSQLVRDVVLAYTRKQAANPSDRPARVGCDA
TTMRRVVEFGCECEDMQLVGACCATLFSFIFHLRSVSSNNLMRSNLSITA
TTMELRINRRKGKQGQRPFSLRYWRHKNWHPAKNPFALVRRWLRLTRNPH
LFGISATSKPSLEESLSLALSATGIQAPSGGVYTSHSPRIGSFNELLQLG
FTRELIMHRFD*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:74439..75374-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1838.t2 ID=Gcaud1838.t2|Name=Gcaud1838.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75374- (Gracilaria caudata M_176_S67 male)
CTGGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCAC
CGTCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAG
GCGGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGT
ACGTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGA
GCTCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCT
TCGTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCC
CAGTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTC
CCCAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAA
AACAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCC
ACTACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCA
GCTCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCC
GTTCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCT
ACTACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAG
GCCGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGA
ACCCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCAC
CTGTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTC
TCTGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACA
CTTCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGA
TTCACACGTGAGCTCATCATGCACCGATTTGACTGA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:74439..75374-

>Gcaud1838.t2 ID=Gcaud1838.t2|Name=Gcaud1838.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:74439..75374- (Gracilaria caudata M_176_S67 male)
CTGGGCCGTCGCGATCGCTCGAATCCGGTGCTAGAAGAGTACAAACGCAC
CGTCCACGCTACAGTACTCGAAAAGTCCACACTTCATGACCGTACCGGAG
GCGGCCAGTCCGCCGCCGATATGGTGGCAGAGTTTGGATATTCAGAGAGT
ACGTGGCTCCATCGGAGCGTACAATTACGCAAATGGTTCTCCTTTAGAGA
GCTCAACCGGCAGCCAAAGTTTACTACTTCAGACGGAGATATCGCAGCCT
TCGTCGGATACCTGGCCAACGAAGGAAAGGTCGGCCCGGCCTCAATTCCC
CAGTATCTTTCGGCCATCTCTCGTTTTCACGTGCAGCACAACCATCCGTC
CCCAACCAAATCACAATTAGTTCGAGACGTAGTGCTCGCCTACACGCGAA
AACAAGCGGCCAATCCTAGCGATCGACCAGCTCGAGTCGGCTGCGACGCC
ACTACTATGCGAAGGGTTGTCGAGTTTGGCTGTGAATGTGAGGACATGCA
GCTCGTCGGGGCCTGCTGTGCTACTTTGTTCAGCTTCATCTTTCATCTCC
GTTCAGTGAGCTCCAACAATCTCATGCGCTCTAACCTCAGTATTACAGCT
ACTACAATGGAACTCCGCATCAATCGTCGCAAAGGCAAACAGGGGCAAAG
GCCGTTCTCCCTGCGTTACTGGCGCCATAAAAATTGGCACCCCGCAAAGA
ACCCGTTTGCTCTAGTCCGCCGTTGGCTTCGTCTGACGCGAAATCCTCAC
CTGTTTGGGATTTCTGCAACCTCCAAGCCGTCTTTAGAAGAATCCCTTTC
TCTGGCTCTTTCAGCCACCGGAATTCAAGCCCCATCAGGTGGTGTGTACA
CTTCTCACAGTCCTCGTATAGGGTCTTTCAACGAACTCCTACAACTTGGA
TTCACACGTGAGCTCATCATGCACCGATTTGACTGA