Gcaud1819.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1819.t1
Unique Name	Gcaud1819.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:27993..29747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706385.1
Preferred name	GTPBP1
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
GOs	GO:0000166,GO:0000177,GO:0000178,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006955,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009116,GO:0009117,GO:0009119,GO:0009141,GO:0009144,GO:0009150,GO:0009199,GO:0009205,GO:0009259,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010604,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0023052,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0042278,GO:0043167,GO:0043168,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046039,GO:0046128,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055086,GO:0060255,GO:0061013,GO:0061014,GO:0065007,GO:0071704,GO:0072521,GO:0080090,GO:0097159,GO:0097367,GO:1901068,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901657,GO:1902494,GO:1903311,GO:1903313,GO:1905354
Evalue	1.9e-262
EggNOG OGs	COG5258@1\|root,KOG0463@2759\|Eukaryota
Description	GTP metabolic process
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1819	Gcaud1819	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 27993..29747 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1819.t1.start1	Gcaud1819.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 27993..27995 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1819.t1.CDS1	Gcaud1819.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 27993..29747 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1819.t1.exon1	Gcaud1819.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 27993..29747 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1819.t1.stop1	Gcaud1819.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 29745..29747 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1819.t1	Gcaud1819.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 27993..29747 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+

mRNA sequence

>Gcaud1819.t1 ID=Gcaud1819.t1|Name=Gcaud1819.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp
MASTHDWVTSVKGASEERRRRSSTAASTAEHISQLTDSEVQRAAMSRQTA
DLQPEDDEGFIEYKWSLVSPSRQRFAQLVTQLNFRLSEGNGEAIYEIGVE
DNGRKKGLSQDRLEASLKTLTDMAHELGAETQLLREADGKEGRVAQVLVR
KVPKALEDYVDIRIAVAGNVDSGKSTLVGVLTGTGALDNGRGLARSQIFT
HKHEMETGRTSTVSQAIIGFDSTGTIVNYTDVRHLTWSDVVEKSSKVLTF
FDLAGHERYLKTTVFGLTAHAPDYCMLVVGANMGVLRMTKEHLAISLALR
VPVYIVVTKIDLAPDQIYSHTLTTLQRILKSPSAGRKLPVIIKSMDEVTL
AAQNIVNDRVVPIFSISNVTGEGLDLLRAFLNLVPSRRNWRQHMDEPAEF
AIDETFVVPGVGTVVAGTTTAGAVSLGQVLNLGPDGRGKFIKAQVKSVHY
KRTPVKRVVAGQAGSLALKKVKRSAVRKGMVLLDASVRPGAIREFTAEVL
VLYHGTTIREGYEPVLHCETIRQAARVLSIDSPIIRTGDRATIKFRFMYH
PEYVKVGARFIFREGRTKGLGKIVSVDSTENPRI*

spliced messenger RNA

>Gcaud1819.t1 ID=Gcaud1819.t1|Name=Gcaud1819.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCGACGCATGATTGGGTAACCTCCGTGAAAGGGGCCTCCGAAGA
AAGGCGGCGGCGTTCGTCAACAGCAGCCTCGACCGCCGAACACATCTCGC
AACTCACAGATTCCGAGGTACAGCGCGCAGCGATGAGCCGTCAGACAGCA
GACCTACAGCCTGAGGACGACGAAGGTTTCATCGAGTATAAATGGAGCCT
GGTATCTCCATCGCGCCAGCGTTTCGCCCAGCTAGTAACTCAATTGAATT
TCAGGTTGTCGGAGGGCAACGGCGAAGCGATATACGAGATAGGCGTGGAA
GACAATGGACGAAAAAAGGGTCTGTCACAAGATCGTCTAGAGGCCTCACT
GAAAACTCTCACGGACATGGCACACGAATTAGGCGCCGAAACGCAGCTGC
TTCGAGAAGCGGACGGAAAAGAGGGCAGAGTGGCGCAAGTGCTCGTAAGA
AAAGTGCCAAAGGCATTAGAGGACTACGTCGATATTCGCATCGCAGTCGC
TGGAAACGTCGATTCCGGCAAGAGCACGCTTGTCGGTGTTCTCACCGGAA
CGGGCGCCCTCGACAATGGAAGGGGTCTTGCCCGCTCCCAAATATTTACT
CACAAGCACGAAATGGAGACCGGTCGTACCTCAACAGTATCGCAAGCCAT
CATTGGCTTTGACTCCACCGGTACAATTGTAAACTATACCGACGTTCGTC
ATCTCACCTGGTCCGATGTCGTTGAGAAGTCCTCAAAAGTGTTGACCTTC
TTCGATCTTGCAGGACATGAACGCTACCTCAAGACCACGGTATTCGGTCT
CACCGCTCATGCCCCGGATTACTGTATGCTTGTCGTGGGAGCAAATATGG
GCGTTTTGCGAATGACCAAGGAGCATCTGGCTATCTCCCTCGCGCTGAGA
GTTCCAGTGTACATAGTTGTAACCAAGATTGATCTAGCTCCGGACCAGAT
TTACAGCCACACTCTCACAACATTACAACGGATACTCAAGAGTCCCAGTG
CTGGAAGGAAGCTTCCCGTCATTATCAAGAGTATGGACGAGGTCACACTC
GCCGCTCAGAACATAGTCAATGATCGCGTCGTGCCAATTTTCTCCATCTC
AAACGTTACGGGTGAAGGTCTCGACTTACTGAGAGCTTTCTTGAATCTCG
TGCCATCAAGACGCAATTGGCGCCAGCACATGGATGAGCCAGCCGAGTTC
GCCATTGATGAAACTTTTGTAGTACCAGGCGTTGGTACCGTAGTGGCGGG
TACAACAACAGCTGGCGCAGTCAGCTTGGGACAAGTACTCAACCTCGGAC
CTGATGGTCGCGGAAAATTCATAAAGGCCCAAGTCAAGTCTGTTCATTAC
AAACGAACGCCCGTCAAGCGCGTGGTGGCAGGCCAAGCAGGTTCATTAGC
GCTGAAGAAAGTCAAGCGATCAGCGGTTCGCAAGGGAATGGTGTTGCTTG
ATGCTAGTGTTCGCCCAGGCGCTATCCGCGAATTCACAGCTGAAGTGCTG
GTGTTATATCACGGAACAACTATCCGCGAGGGCTACGAACCGGTATTACA
TTGTGAAACCATTAGGCAAGCGGCCAGAGTACTGTCGATAGATTCTCCAA
TCATCAGAACGGGTGACCGTGCAACCATCAAATTCCGCTTCATGTACCAT
CCAGAGTACGTCAAAGTGGGAGCCCGATTCATTTTCCGCGAAGGAAGAAC
GAAGGGCCTAGGAAAGATCGTGTCGGTGGATTCAACGGAGAACCCAAGAA
TCTAA

protein sequence of Gcaud1819.t1

>Gcaud1819.t1 ID=Gcaud1819.t1|Name=Gcaud1819.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=585bp
MASTHDWVTSVKGASEERRRRSSTAASTAEHISQLTDSEVQRAAMSRQTA
DLQPEDDEGFIEYKWSLVSPSRQRFAQLVTQLNFRLSEGNGEAIYEIGVE
DNGRKKGLSQDRLEASLKTLTDMAHELGAETQLLREADGKEGRVAQVLVR
KVPKALEDYVDIRIAVAGNVDSGKSTLVGVLTGTGALDNGRGLARSQIFT
HKHEMETGRTSTVSQAIIGFDSTGTIVNYTDVRHLTWSDVVEKSSKVLTF
FDLAGHERYLKTTVFGLTAHAPDYCMLVVGANMGVLRMTKEHLAISLALR
VPVYIVVTKIDLAPDQIYSHTLTTLQRILKSPSAGRKLPVIIKSMDEVTL
AAQNIVNDRVVPIFSISNVTGEGLDLLRAFLNLVPSRRNWRQHMDEPAEF
AIDETFVVPGVGTVVAGTTTAGAVSLGQVLNLGPDGRGKFIKAQVKSVHY
KRTPVKRVVAGQAGSLALKKVKRSAVRKGMVLLDASVRPGAIREFTAEVL
VLYHGTTIREGYEPVLHCETIRQAARVLSIDSPIIRTGDRATIKFRFMYH
PEYVKVGARFIFREGRTKGLGKIVSVDSTENPRI*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1819.t1 ID=Gcaud1819.t1|Name=Gcaud1819.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+ (Gracilaria caudata M_176_S67 male)
ATGGCATCGACGCATGATTGGGTAACCTCCGTGAAAGGGGCCTCCGAAGA
AAGGCGGCGGCGTTCGTCAACAGCAGCCTCGACCGCCGAACACATCTCGC
AACTCACAGATTCCGAGGTACAGCGCGCAGCGATGAGCCGTCAGACAGCA
GACCTACAGCCTGAGGACGACGAAGGTTTCATCGAGTATAAATGGAGCCT
GGTATCTCCATCGCGCCAGCGTTTCGCCCAGCTAGTAACTCAATTGAATT
TCAGGTTGTCGGAGGGCAACGGCGAAGCGATATACGAGATAGGCGTGGAA
GACAATGGACGAAAAAAGGGTCTGTCACAAGATCGTCTAGAGGCCTCACT
GAAAACTCTCACGGACATGGCACACGAATTAGGCGCCGAAACGCAGCTGC
TTCGAGAAGCGGACGGAAAAGAGGGCAGAGTGGCGCAAGTGCTCGTAAGA
AAAGTGCCAAAGGCATTAGAGGACTACGTCGATATTCGCATCGCAGTCGC
TGGAAACGTCGATTCCGGCAAGAGCACGCTTGTCGGTGTTCTCACCGGAA
CGGGCGCCCTCGACAATGGAAGGGGTCTTGCCCGCTCCCAAATATTTACT
CACAAGCACGAAATGGAGACCGGTCGTACCTCAACAGTATCGCAAGCCAT
CATTGGCTTTGACTCCACCGGTACAATTGTAAACTATACCGACGTTCGTC
ATCTCACCTGGTCCGATGTCGTTGAGAAGTCCTCAAAAGTGTTGACCTTC
TTCGATCTTGCAGGACATGAACGCTACCTCAAGACCACGGTATTCGGTCT
CACCGCTCATGCCCCGGATTACTGTATGCTTGTCGTGGGAGCAAATATGG
GCGTTTTGCGAATGACCAAGGAGCATCTGGCTATCTCCCTCGCGCTGAGA
GTTCCAGTGTACATAGTTGTAACCAAGATTGATCTAGCTCCGGACCAGAT
TTACAGCCACACTCTCACAACATTACAACGGATACTCAAGAGTCCCAGTG
CTGGAAGGAAGCTTCCCGTCATTATCAAGAGTATGGACGAGGTCACACTC
GCCGCTCAGAACATAGTCAATGATCGCGTCGTGCCAATTTTCTCCATCTC
AAACGTTACGGGTGAAGGTCTCGACTTACTGAGAGCTTTCTTGAATCTCG
TGCCATCAAGACGCAATTGGCGCCAGCACATGGATGAGCCAGCCGAGTTC
GCCATTGATGAAACTTTTGTAGTACCAGGCGTTGGTACCGTAGTGGCGGG
TACAACAACAGCTGGCGCAGTCAGCTTGGGACAAGTACTCAACCTCGGAC
CTGATGGTCGCGGAAAATTCATAAAGGCCCAAGTCAAGTCTGTTCATTAC
AAACGAACGCCCGTCAAGCGCGTGGTGGCAGGCCAAGCAGGTTCATTAGC
GCTGAAGAAAGTCAAGCGATCAGCGGTTCGCAAGGGAATGGTGTTGCTTG
ATGCTAGTGTTCGCCCAGGCGCTATCCGCGAATTCACAGCTGAAGTGCTG
GTGTTATATCACGGAACAACTATCCGCGAGGGCTACGAACCGGTATTACA
TTGTGAAACCATTAGGCAAGCGGCCAGAGTACTGTCGATAGATTCTCCAA
TCATCAGAACGGGTGACCGTGCAACCATCAAATTCCGCTTCATGTACCAT
CCAGAGTACGTCAAAGTGGGAGCCCGATTCATTTTCCGCGAAGGAAGAAC
GAAGGGCCTAGGAAAGATCGTGTCGGTGGATTCAACGGAGAACCCAAGAA
TCTAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+

>Gcaud1819.t1 ID=Gcaud1819.t1|Name=Gcaud1819.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1755bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:27993..29747+ (Gracilaria caudata M_176_S67 male)
ATGGCATCGACGCATGATTGGGTAACCTCCGTGAAAGGGGCCTCCGAAGA
AAGGCGGCGGCGTTCGTCAACAGCAGCCTCGACCGCCGAACACATCTCGC
AACTCACAGATTCCGAGGTACAGCGCGCAGCGATGAGCCGTCAGACAGCA
GACCTACAGCCTGAGGACGACGAAGGTTTCATCGAGTATAAATGGAGCCT
GGTATCTCCATCGCGCCAGCGTTTCGCCCAGCTAGTAACTCAATTGAATT
TCAGGTTGTCGGAGGGCAACGGCGAAGCGATATACGAGATAGGCGTGGAA
GACAATGGACGAAAAAAGGGTCTGTCACAAGATCGTCTAGAGGCCTCACT
GAAAACTCTCACGGACATGGCACACGAATTAGGCGCCGAAACGCAGCTGC
TTCGAGAAGCGGACGGAAAAGAGGGCAGAGTGGCGCAAGTGCTCGTAAGA
AAAGTGCCAAAGGCATTAGAGGACTACGTCGATATTCGCATCGCAGTCGC
TGGAAACGTCGATTCCGGCAAGAGCACGCTTGTCGGTGTTCTCACCGGAA
CGGGCGCCCTCGACAATGGAAGGGGTCTTGCCCGCTCCCAAATATTTACT
CACAAGCACGAAATGGAGACCGGTCGTACCTCAACAGTATCGCAAGCCAT
CATTGGCTTTGACTCCACCGGTACAATTGTAAACTATACCGACGTTCGTC
ATCTCACCTGGTCCGATGTCGTTGAGAAGTCCTCAAAAGTGTTGACCTTC
TTCGATCTTGCAGGACATGAACGCTACCTCAAGACCACGGTATTCGGTCT
CACCGCTCATGCCCCGGATTACTGTATGCTTGTCGTGGGAGCAAATATGG
GCGTTTTGCGAATGACCAAGGAGCATCTGGCTATCTCCCTCGCGCTGAGA
GTTCCAGTGTACATAGTTGTAACCAAGATTGATCTAGCTCCGGACCAGAT
TTACAGCCACACTCTCACAACATTACAACGGATACTCAAGAGTCCCAGTG
CTGGAAGGAAGCTTCCCGTCATTATCAAGAGTATGGACGAGGTCACACTC
GCCGCTCAGAACATAGTCAATGATCGCGTCGTGCCAATTTTCTCCATCTC
AAACGTTACGGGTGAAGGTCTCGACTTACTGAGAGCTTTCTTGAATCTCG
TGCCATCAAGACGCAATTGGCGCCAGCACATGGATGAGCCAGCCGAGTTC
GCCATTGATGAAACTTTTGTAGTACCAGGCGTTGGTACCGTAGTGGCGGG
TACAACAACAGCTGGCGCAGTCAGCTTGGGACAAGTACTCAACCTCGGAC
CTGATGGTCGCGGAAAATTCATAAAGGCCCAAGTCAAGTCTGTTCATTAC
AAACGAACGCCCGTCAAGCGCGTGGTGGCAGGCCAAGCAGGTTCATTAGC
GCTGAAGAAAGTCAAGCGATCAGCGGTTCGCAAGGGAATGGTGTTGCTTG
ATGCTAGTGTTCGCCCAGGCGCTATCCGCGAATTCACAGCTGAAGTGCTG
GTGTTATATCACGGAACAACTATCCGCGAGGGCTACGAACCGGTATTACA
TTGTGAAACCATTAGGCAAGCGGCCAGAGTACTGTCGATAGATTCTCCAA
TCATCAGAACGGGTGACCGTGCAACCATCAAATTCCGCTTCATGTACCAT
CCAGAGTACGTCAAAGTGGGAGCCCGATTCATTTTCCGCGAAGGAAGAAC
GAAGGGCCTAGGAAAGATCGTGTCGGTGGATTCAACGGAGAACCCAAGAA
TCTAA