Gcaud1803.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1803.t1
Unique Name	Gcaud1803.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	225

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_6141_length_1275_cov_5.183277	contig	NODE_6141_length_1275_cov_5.183277:4..678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS117CT
PFAMs	DIE2_ALG10,IMD,SH3_1,SH3_9
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03850,ko:K05627
KEGG Reaction	R06264
KEGG Pathway	ko00510,ko01100,ko04520,ko04810,map00510,map01100,map04520,map04810
KEGG Module	M00055
GOs	GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008064,GO:0008150,GO:0008286,GO:0008289,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010638,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0022607,GO:0023052,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030832,GO:0030833,GO:0030838,GO:0031334,GO:0031984,GO:0032271,GO:0032273,GO:0032535,GO:0032868,GO:0032869,GO:0032870,GO:0032956,GO:0032970,GO:0033043,GO:0042175,GO:0042221,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043434,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046847,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051017,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0051716,GO:0051764,GO:0061024,GO:0061572,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071840,GO:0090066,GO:0097435,GO:0098827,GO:0110053,GO:0120031,GO:0120036,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902903,GO:1902905,GO:2000249,GO:2000251
Evalue	2.38e-14
EggNOG OGs	KOG2642@1\|root,KOG2642@2759\|Eukaryota
EC	2.4.1.256
Description	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity
COG category	T
CAZy	GT59
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1803	Gcaud1803	Gracilaria caudata M_176_S67 male	gene	NODE_6141_length_1275_cov_5.183277 4..678 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1803.t1.start1	Gcaud1803.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_6141_length_1275_cov_5.183277 4..6 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1803.t1.CDS1	Gcaud1803.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_6141_length_1275_cov_5.183277 4..678 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1803.t1.exon1	Gcaud1803.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_6141_length_1275_cov_5.183277 4..678 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1803.t1.stop1	Gcaud1803.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_6141_length_1275_cov_5.183277 676..678 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1803.t1	Gcaud1803.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_6141_length_1275_cov_5.183277 4..678 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_6141_length_1275_cov_5.183277:4..678+
coding sequence from alignment at NODE_6141_length_1275_cov_5.183277:4..678+

mRNA sequence

>Gcaud1803.t1 ID=Gcaud1803.t1|Name=Gcaud1803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MFAYFAAFHGSAFGLIQLSAPLETLKVIYMVFSSFKFVTLLFSVCIGMIG
IVLATGDRVHPFVLADNRHFTFYIYRRWLLRSVWRRLSLAPVYAWCIANP
FFERETTRGIQQQANKPSVDEDRHCQWLRTADLVSDIALLICAYVTLVPA
ALLEPRYFVVGSTLFCLRRSSRLNSPPNKSLLQLVSVAMVLLNVVFVYVF
TELPFPRPVDQHMPNDMSPGRFMF*

spliced messenger RNA

>Gcaud1803.t1 ID=Gcaud1803.t1|Name=Gcaud1803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_6141_length_1275_cov_5.183277:4..678+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCTTACTTCGCAGCTTTCCACGGGAGTGCCTTCGGTTTGATTCA
GCTTTCTGCCCCATTGGAGACATTGAAGGTGATTTACATGGTTTTCTCGT
CCTTCAAGTTCGTGACGTTGCTCTTCAGTGTTTGCATTGGTATGATCGGC
ATTGTGCTCGCCACAGGAGACAGAGTACATCCTTTTGTGCTCGCTGATAA
CCGTCATTTTACTTTTTATATCTACCGTCGTTGGTTGCTGCGTTCTGTGT
GGCGAAGACTGTCACTTGCCCCGGTGTATGCATGGTGTATTGCGAATCCA
TTCTTTGAGAGGGAGACAACGCGTGGTATTCAACAGCAAGCAAACAAACC
GTCGGTTGATGAAGACCGTCACTGCCAGTGGCTACGGACTGCCGACTTAG
TTTCGGATATCGCGTTGTTAATTTGCGCGTATGTTACGCTAGTACCAGCA
GCTCTCCTTGAACCTAGGTACTTTGTCGTTGGCAGCACCTTATTCTGTTT
AAGGCGTTCTTCGAGACTAAATTCGCCACCGAACAAAAGTCTGTTGCAGC
TTGTATCTGTTGCTATGGTTCTTTTGAACGTTGTGTTTGTGTACGTTTTC
ACCGAACTTCCATTTCCGAGACCGGTTGATCAACACATGCCGAACGACAT
GTCCCCAGGCCGTTTCATGTTTTAA

protein sequence of Gcaud1803.t1

>Gcaud1803.t1 ID=Gcaud1803.t1|Name=Gcaud1803.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MFAYFAAFHGSAFGLIQLSAPLETLKVIYMVFSSFKFVTLLFSVCIGMIG
IVLATGDRVHPFVLADNRHFTFYIYRRWLLRSVWRRLSLAPVYAWCIANP
FFERETTRGIQQQANKPSVDEDRHCQWLRTADLVSDIALLICAYVTLVPA
ALLEPRYFVVGSTLFCLRRSSRLNSPPNKSLLQLVSVAMVLLNVVFVYVF
TELPFPRPVDQHMPNDMSPGRFMF*

mRNA from alignment at NODE_6141_length_1275_cov_5.183277:4..678+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1803.t1 ID=Gcaud1803.t1|Name=Gcaud1803.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_6141_length_1275_cov_5.183277:4..678+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCTTACTTCGCAGCTTTCCACGGGAGTGCCTTCGGTTTGATTCA
GCTTTCTGCCCCATTGGAGACATTGAAGGTGATTTACATGGTTTTCTCGT
CCTTCAAGTTCGTGACGTTGCTCTTCAGTGTTTGCATTGGTATGATCGGC
ATTGTGCTCGCCACAGGAGACAGAGTACATCCTTTTGTGCTCGCTGATAA
CCGTCATTTTACTTTTTATATCTACCGTCGTTGGTTGCTGCGTTCTGTGT
GGCGAAGACTGTCACTTGCCCCGGTGTATGCATGGTGTATTGCGAATCCA
TTCTTTGAGAGGGAGACAACGCGTGGTATTCAACAGCAAGCAAACAAACC
GTCGGTTGATGAAGACCGTCACTGCCAGTGGCTACGGACTGCCGACTTAG
TTTCGGATATCGCGTTGTTAATTTGCGCGTATGTTACGCTAGTACCAGCA
GCTCTCCTTGAACCTAGGTACTTTGTCGTTGGCAGCACCTTATTCTGTTT
AAGGCGTTCTTCGAGACTAAATTCGCCACCGAACAAAAGTCTGTTGCAGC
TTGTATCTGTTGCTATGGTTCTTTTGAACGTTGTGTTTGTGTACGTTTTC
ACCGAACTTCCATTTCCGAGACCGGTTGATCAACACATGCCGAACGACAT
GTCCCCAGGCCGTTTCATGTTTTAA

Coding sequence (CDS) from alignment at NODE_6141_length_1275_cov_5.183277:4..678+

>Gcaud1803.t1 ID=Gcaud1803.t1|Name=Gcaud1803.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_6141_length_1275_cov_5.183277:4..678+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCTTACTTCGCAGCTTTCCACGGGAGTGCCTTCGGTTTGATTCA
GCTTTCTGCCCCATTGGAGACATTGAAGGTGATTTACATGGTTTTCTCGT
CCTTCAAGTTCGTGACGTTGCTCTTCAGTGTTTGCATTGGTATGATCGGC
ATTGTGCTCGCCACAGGAGACAGAGTACATCCTTTTGTGCTCGCTGATAA
CCGTCATTTTACTTTTTATATCTACCGTCGTTGGTTGCTGCGTTCTGTGT
GGCGAAGACTGTCACTTGCCCCGGTGTATGCATGGTGTATTGCGAATCCA
TTCTTTGAGAGGGAGACAACGCGTGGTATTCAACAGCAAGCAAACAAACC
GTCGGTTGATGAAGACCGTCACTGCCAGTGGCTACGGACTGCCGACTTAG
TTTCGGATATCGCGTTGTTAATTTGCGCGTATGTTACGCTAGTACCAGCA
GCTCTCCTTGAACCTAGGTACTTTGTCGTTGGCAGCACCTTATTCTGTTT
AAGGCGTTCTTCGAGACTAAATTCGCCACCGAACAAAAGTCTGTTGCAGC
TTGTATCTGTTGCTATGGTTCTTTTGAACGTTGTGTTTGTGTACGTTTTC
ACCGAACTTCCATTTCCGAGACCGGTTGATCAACACATGCCGAACGACAT
GTCCCCAGGCCGTTTCATGTTTTAA