Gcaud1796.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1796.t1
Unique Name	Gcaud1796.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1117_length_13638_cov_4.806968	contig	NODE_1117_length_13638_cov_4.806968:11864..13219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1536773.R70331_16755
Max annot lvl	91061\|Bacilli
Evalue	4.25e-37
EggNOG OGs	COG2357@1\|root,COG2357@2\|Bacteria,1UIQY@1239\|Firmicutes,4HC0J@91061\|Bacilli,2776X@186822\|Paenibacillaceae
Description	Glycosyl hydrolase family 53
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1796	Gcaud1796	Gracilaria caudata M_176_S67 male	gene	NODE_1117_length_13638_cov_4.806968 11864..13219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1	Gcaud1796.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1117_length_13638_cov_4.806968 11864..13219 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1.start1	Gcaud1796.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1117_length_13638_cov_4.806968 11864..11866 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1.CDS1	Gcaud1796.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 11864..12199 +
Gcaud1796.t1.CDS2	Gcaud1796.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 12291..12497 +
Gcaud1796.t1.CDS3	Gcaud1796.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 12574..12787 +
Gcaud1796.t1.CDS4	Gcaud1796.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 12873..12940 +
Gcaud1796.t1.CDS5	Gcaud1796.t1.CDS5	Gracilaria caudata M_176_S67 male	CDS	NODE_1117_length_13638_cov_4.806968 13040..13219 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1.exon1	Gcaud1796.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 11864..12199 +
Gcaud1796.t1.exon2	Gcaud1796.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 12291..12497 +
Gcaud1796.t1.exon3	Gcaud1796.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 12574..12787 +
Gcaud1796.t1.exon4	Gcaud1796.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 12873..12940 +
Gcaud1796.t1.exon5	Gcaud1796.t1.exon5	Gracilaria caudata M_176_S67 male	exon	NODE_1117_length_13638_cov_4.806968 13040..13219 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1.intron1	Gcaud1796.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1117_length_13638_cov_4.806968 12200..12290 +
Gcaud1796.t1.intron2	Gcaud1796.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1117_length_13638_cov_4.806968 12498..12573 +
Gcaud1796.t1.intron3	Gcaud1796.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_1117_length_13638_cov_4.806968 12788..12872 +
Gcaud1796.t1.intron4	Gcaud1796.t1.intron4	Gracilaria caudata M_176_S67 male	intron	NODE_1117_length_13638_cov_4.806968 12941..13039 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1796.t1.stop1	Gcaud1796.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1117_length_13638_cov_4.806968 13217..13219 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+
coding sequence from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+

mRNA sequence

>Gcaud1796.t1 ID=Gcaud1796.t1|Name=Gcaud1796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MKLSALLMPALLVCAAAVNGLQIMGAAFSTGHDTSGYRQWYVHESLKQLK
RTGSNYVQISVYSKMPSLDALSAAQQTDDESIGYIIRTVRREGFKVFLKP
VIEIEGHMWRGFLTGSPMWFEKVYRPFITHMARIAQQEDVDIFSVGSEYR
DSEVQVNEWNKTIDEVQKLYFGRITYIANHDSYKDFELWDRLHFISISAY
FGLMPGDHGPSPNMEETKQLWRGKALEIKNWRDMSGLNNKKVLLAEVGVQ
SKGNGVVYREPWNWNAEAPVNYYEQEKMYEGICAAFSEGDWVAGILFWNW
ELQPYAGTYYPSTADYTPQNKPAQQVMKRYFTRT*

spliced messenger RNA

>Gcaud1796.t1 ID=Gcaud1796.t1|Name=Gcaud1796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGTCCGCGTTGCTGATGCCGGCGCTGCTTGTGTGCGCCGCCGC
CGTCAATGGCTTGCAGATAATGGGCGCTGCCTTCTCCACTGGCCATGATA
CCTCCGGCTATCGCCAGTGGTACGTGCACGAGTCCCTGAAACAACTCAAG
CGCACGGGCTCCAACTACGTCCAGATCTCTGTCTACTCCAAGATGCCTAG
TTTGGACGCGCTCTCCGCCGCGCAGCAAACCGACGATGAGTCCATTGGCT
ATATTATTCGCACCGTTAGGCGCGAAGGTTTCAAGGTGTTCCTCAAGCCC
GTCATCGAGATTGAGGGCCACATGTGGAGAGGTTTTCTCACTGGTAGTCC
AATGTGGTTTGAAAAGGTGTACCGACCGTTCATCACGCACATGGCACGCA
TTGCGCAGCAGGAAGACGTCGACATCTTCTCCGTCGGCTCGGAGTATCGC
GACAGTGAAGTGCAAGTCAATGAGTGGAACAAGACCATAGATGAGGTGCA
AAAGCTATACTTTGGTCGCATCACCTACATTGCCAATCACGACTCTTACA
AAGACTTCGAACTGTGGGATCGTCTGCACTTCATCTCCATATCGGCATAC
TTCGGGTTGATGCCGGGCGACCACGGCCCCTCCCCAAACATGGAAGAGAC
CAAGCAGCTGTGGCGCGGCAAAGCGCTTGAAATCAAGAACTGGCGGGACA
TGAGCGGCCTCAACAACAAGAAGGTGCTCTTGGCCGAAGTGGGTGTTCAG
AGCAAAGGAAACGGCGTGGTCTATCGCGAACCTTGGAACTGGAATGCAGA
GGCACCCGTCAACTATTACGAGCAGGAAAAGATGTATGAGGGCATTTGTG
CTGCTTTCAGTGAAGGAGACTGGGTTGCGGGAATCCTGTTCTGGAACTGG
GAGCTGCAGCCATACGCCGGAACGTACTACCCAAGTACAGCTGACTACAC
GCCGCAGAACAAGCCCGCGCAACAGGTCATGAAGCGCTACTTCACTCGCA
CGTGA

protein sequence of Gcaud1796.t1

>Gcaud1796.t1 ID=Gcaud1796.t1|Name=Gcaud1796.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MKLSALLMPALLVCAAAVNGLQIMGAAFSTGHDTSGYRQWYVHESLKQLK
RTGSNYVQISVYSKMPSLDALSAAQQTDDESIGYIIRTVRREGFKVFLKP
VIEIEGHMWRGFLTGSPMWFEKVYRPFITHMARIAQQEDVDIFSVGSEYR
DSEVQVNEWNKTIDEVQKLYFGRITYIANHDSYKDFELWDRLHFISISAY
FGLMPGDHGPSPNMEETKQLWRGKALEIKNWRDMSGLNNKKVLLAEVGVQ
SKGNGVVYREPWNWNAEAPVNYYEQEKMYEGICAAFSEGDWVAGILFWNW
ELQPYAGTYYPSTADYTPQNKPAQQVMKRYFTRT*

mRNA from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1796.t1 ID=Gcaud1796.t1|Name=Gcaud1796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTGTCCGCGTTGCTGATGCCGGCGCTGCTTGTGTGCGCCGCCGC
CGTCAATGGCTTGCAGATAATGGGCGCTGCCTTCTCCACTGGCCATGATA
CCTCCGGCTATCGCCAGTGGTACGTGCACGAGTCCCTGAAACAACTCAAG
CGCACGGGCTCCAACTACGTCCAGATCTCTGTCTACTCCAAGATGCCTAG
TTTGGACGCGCTCTCCGCCGCGCAGCAAACCGACGATGAGTCCATTGGCT
ATATTATTCGCACCGTTAGGCGCGAAGGTTTCAAGGTGTTCCTCAAGCCC
GTCATCGAGATTGAGGGCCACATGTGGAGAGGTTTTGTGAGTTAATAGTT
CGTTTGTTTGTTTGCCCGACTTGCATGTTTTCCACGCTTGTGTTGCTGAC
TTTTCTTCCTCATCCTTCCAACTGCAGCTCACTGGTAGTCCAATGTGGTT
TGAAAAGGTGTACCGACCGTTCATCACGCACATGGCACGCATTGCGCAGC
AGGAAGACGTCGACATCTTCTCCGTCGGCTCGGAGTATCGCGACAGTGAA
GTGCAAGTCAATGAGTGGAACAAGACCATAGATGAGGTGCAAAAGCTATA
CTTTGGTCGCATCACCTACATTGCCAATCACGACGTACGTACCCACTCAT
TCTCTTAGTCGCGCACAATGGGACGCTAACTTACCGCTCTTCTGTTTACT
CTTTCCACAGTCTTACAAAGACTTCGAACTGTGGGATCGTCTGCACTTCA
TCTCCATATCGGCATACTTCGGGTTGATGCCGGGCGACCACGGCCCCTCC
CCAAACATGGAAGAGACCAAGCAGCTGTGGCGCGGCAAAGCGCTTGAAAT
CAAGAACTGGCGGGACATGAGCGGCCTCAACAACAAGAAGGTGCTCTTGG
CCGAAGTGGGTGTTCAGAGCAAAGGTAAGCCATATATCCCTTCAGCATTC
CACACGTGCCTCTTTTTGCACTAACATTATCAATCGCTTCATTTGGGCCA
CTCATAAAGGAAACGGCGTGGTCTATCGCGAACCTTGGAACTGGAATGCA
GAGGCACCCGTCAACTATTACGAGCAGGTAAGAGCATGCACTCCTCTTTC
CGCGCCTGCTACTCGCTTGCTGCAGCTTAGGTGGGTACTGACAGTTTGCA
CATGTGATTGTGATCATGAGGAGCAGGAAAAGATGTATGAGGGCATTTGT
GCTGCTTTCAGTGAAGGAGACTGGGTTGCGGGAATCCTGTTCTGGAACTG
GGAGCTGCAGCCATACGCCGGAACGTACTACCCAAGTACAGCTGACTACA
CGCCGCAGAACAAGCCCGCGCAACAGGTCATGAAGCGCTACTTCACTCGC
ACGTGA

Coding sequence (CDS) from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+

>Gcaud1796.t1 ID=Gcaud1796.t1|Name=Gcaud1796.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_1117_length_13638_cov_4.806968:11864..13219+ (Gracilaria caudata M_176_S67 male)
ATGAAGCTGTCCGCGTTGCTGATGCCGGCGCTGCTTGTGTGCGCCGCCGC
CGTCAATGGCTTGCAGATAATGGGCGCTGCCTTCTCCACTGGCCATGATA
CCTCCGGCTATCGCCAGTGGTACGTGCACGAGTCCCTGAAACAACTCAAG
CGCACGGGCTCCAACTACGTCCAGATCTCTGTCTACTCCAAGATGCCTAG
TTTGGACGCGCTCTCCGCCGCGCAGCAAACCGACGATGAGTCCATTGGCT
ATATTATTCGCACCGTTAGGCGCGAAGGTTTCAAGGTGTTCCTCAAGCCC
GTCATCGAGATTGAGGGCCACATGTGGAGAGGTTTTCTCACTGGTAGTCC
AATGTGGTTTGAAAAGGTGTACCGACCGTTCATCACGCACATGGCACGCA
TTGCGCAGCAGGAAGACGTCGACATCTTCTCCGTCGGCTCGGAGTATCGC
GACAGTGAAGTGCAAGTCAATGAGTGGAACAAGACCATAGATGAGGTGCA
AAAGCTATACTTTGGTCGCATCACCTACATTGCCAATCACGACTCTTACA
AAGACTTCGAACTGTGGGATCGTCTGCACTTCATCTCCATATCGGCATAC
TTCGGGTTGATGCCGGGCGACCACGGCCCCTCCCCAAACATGGAAGAGAC
CAAGCAGCTGTGGCGCGGCAAAGCGCTTGAAATCAAGAACTGGCGGGACA
TGAGCGGCCTCAACAACAAGAAGGTGCTCTTGGCCGAAGTGGGTGTTCAG
AGCAAAGGAAACGGCGTGGTCTATCGCGAACCTTGGAACTGGAATGCAGA
GGCACCCGTCAACTATTACGAGCAGGAAAAGATGTATGAGGGCATTTGTG
CTGCTTTCAGTGAAGGAGACTGGGTTGCGGGAATCCTGTTCTGGAACTGG
GAGCTGCAGCCATACGCCGGAACGTACTACCCAAGTACAGCTGACTACAC
GCCGCAGAACAAGCCCGCGCAACAGGTCATGAAGCGCTACTTCACTCGCA
CGTGA