Gcaud1792.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1792.t1
Unique Name	Gcaud1792.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_472_length_24489_cov_3.453562	contig	NODE_472_length_24489_cov_3.453562:19302..20150 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM126CT
Max annot lvl	45157.CMM126CT\|-
Evalue	2e-36
EggNOG OGs	KOG3071@1\|root,KOG3071@2759\|Eukaryota
Description	fatty acid elongation, saturated fatty acid
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1792	Gcaud1792	Gracilaria caudata M_176_S67 male	gene	NODE_472_length_24489_cov_3.453562 19302..20150 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1792.t1.stop1	Gcaud1792.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_472_length_24489_cov_3.453562 19302..19304 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1792.t1.CDS1	Gcaud1792.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_472_length_24489_cov_3.453562 19302..20150 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1792.t1.exon1	Gcaud1792.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_472_length_24489_cov_3.453562 19302..20150 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1792.t1.start1	Gcaud1792.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_472_length_24489_cov_3.453562 20148..20150 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1792.t1	Gcaud1792.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_472_length_24489_cov_3.453562 19302..20150 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_472_length_24489_cov_3.453562:19302..20150-
coding sequence from alignment at NODE_472_length_24489_cov_3.453562:19302..20150-

mRNA sequence

>Gcaud1792.t1 ID=Gcaud1792.t1|Name=Gcaud1792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MLNRAFEAGWSSATSGTTSVSSFVTRLFRSVSPASAPILSDLRSVLLAIA
VYLILLRVIRSQCFALRDDPFVKHVAIMHNIILAIASAYMNVHATRSIIL
VSKAQTWLATVCTPAQTAVPSPIQATFYLFYLSKFYELLDTFILVMRNKP
LSFLHVWHHCTVILSVWGWLEYGVTIGLYGLWFNTFVHVIMYTYFAFSLA
GVKMPFKRLITLMQIIQFLTGFASLIPFFWSYIKVGGCTGLPGLAVTGTT
NLSYLVLFLRFYSKSYKSSTKIDKAYEAKKAK*

spliced messenger RNA

>Gcaud1792.t1 ID=Gcaud1792.t1|Name=Gcaud1792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:19302..20150- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACCGTGCGTTCGAGGCTGGTTGGAGCAGTGCCACAAGCGGCAC
TACCTCCGTCTCCAGCTTCGTGACGCGTCTCTTCCGTTCCGTGTCACCGG
CTTCAGCTCCAATTCTGTCTGATTTGCGCTCTGTTTTGCTCGCGATAGCG
GTGTATCTTATCCTTTTACGCGTCATTCGTTCGCAATGTTTCGCTCTTCG
TGATGATCCTTTTGTCAAACATGTTGCCATTATGCATAATATTATCCTGG
CAATTGCATCCGCCTACATGAATGTCCACGCTACTCGATCTATCATATTA
GTTTCAAAGGCTCAAACGTGGCTCGCAACTGTCTGTACGCCGGCACAAAC
TGCCGTTCCATCCCCGATTCAAGCTACATTCTATCTGTTCTATCTCAGCA
AATTTTACGAACTCCTCGATACCTTCATCTTGGTAATGCGAAACAAACCG
CTGTCCTTTCTTCACGTATGGCATCATTGTACTGTAATACTCTCTGTTTG
GGGATGGCTAGAGTATGGTGTAACAATCGGCCTTTATGGACTTTGGTTCA
ACACATTTGTTCATGTCATCATGTACACATACTTTGCATTTAGTCTGGCA
GGTGTGAAGATGCCCTTTAAACGTCTTATCACTCTTATGCAGATCATTCA
ATTTCTCACCGGCTTTGCGTCGTTGATACCTTTCTTTTGGAGTTACATCA
AGGTGGGCGGGTGTACGGGTTTACCGGGGCTCGCTGTAACCGGAACAACT
AATCTTTCATACCTTGTTTTGTTTCTGCGCTTTTACTCAAAGTCGTATAA
GTCGTCCACAAAGATTGACAAGGCATATGAAGCGAAAAAGGCGAAATGA

protein sequence of Gcaud1792.t1

>Gcaud1792.t1 ID=Gcaud1792.t1|Name=Gcaud1792.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MLNRAFEAGWSSATSGTTSVSSFVTRLFRSVSPASAPILSDLRSVLLAIA
VYLILLRVIRSQCFALRDDPFVKHVAIMHNIILAIASAYMNVHATRSIIL
VSKAQTWLATVCTPAQTAVPSPIQATFYLFYLSKFYELLDTFILVMRNKP
LSFLHVWHHCTVILSVWGWLEYGVTIGLYGLWFNTFVHVIMYTYFAFSLA
GVKMPFKRLITLMQIIQFLTGFASLIPFFWSYIKVGGCTGLPGLAVTGTT
NLSYLVLFLRFYSKSYKSSTKIDKAYEAKKAK*

mRNA from alignment at NODE_472_length_24489_cov_3.453562:19302..20150-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1792.t1 ID=Gcaud1792.t1|Name=Gcaud1792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:19302..20150- (Gracilaria caudata M_176_S67 male)
ATGCTCAACCGTGCGTTCGAGGCTGGTTGGAGCAGTGCCACAAGCGGCAC
TACCTCCGTCTCCAGCTTCGTGACGCGTCTCTTCCGTTCCGTGTCACCGG
CTTCAGCTCCAATTCTGTCTGATTTGCGCTCTGTTTTGCTCGCGATAGCG
GTGTATCTTATCCTTTTACGCGTCATTCGTTCGCAATGTTTCGCTCTTCG
TGATGATCCTTTTGTCAAACATGTTGCCATTATGCATAATATTATCCTGG
CAATTGCATCCGCCTACATGAATGTCCACGCTACTCGATCTATCATATTA
GTTTCAAAGGCTCAAACGTGGCTCGCAACTGTCTGTACGCCGGCACAAAC
TGCCGTTCCATCCCCGATTCAAGCTACATTCTATCTGTTCTATCTCAGCA
AATTTTACGAACTCCTCGATACCTTCATCTTGGTAATGCGAAACAAACCG
CTGTCCTTTCTTCACGTATGGCATCATTGTACTGTAATACTCTCTGTTTG
GGGATGGCTAGAGTATGGTGTAACAATCGGCCTTTATGGACTTTGGTTCA
ACACATTTGTTCATGTCATCATGTACACATACTTTGCATTTAGTCTGGCA
GGTGTGAAGATGCCCTTTAAACGTCTTATCACTCTTATGCAGATCATTCA
ATTTCTCACCGGCTTTGCGTCGTTGATACCTTTCTTTTGGAGTTACATCA
AGGTGGGCGGGTGTACGGGTTTACCGGGGCTCGCTGTAACCGGAACAACT
AATCTTTCATACCTTGTTTTGTTTCTGCGCTTTTACTCAAAGTCGTATAA
GTCGTCCACAAAGATTGACAAGGCATATGAAGCGAAAAAGGCGAAATGA

Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:19302..20150-

>Gcaud1792.t1 ID=Gcaud1792.t1|Name=Gcaud1792.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:19302..20150- (Gracilaria caudata M_176_S67 male)
ATGCTCAACCGTGCGTTCGAGGCTGGTTGGAGCAGTGCCACAAGCGGCAC
TACCTCCGTCTCCAGCTTCGTGACGCGTCTCTTCCGTTCCGTGTCACCGG
CTTCAGCTCCAATTCTGTCTGATTTGCGCTCTGTTTTGCTCGCGATAGCG
GTGTATCTTATCCTTTTACGCGTCATTCGTTCGCAATGTTTCGCTCTTCG
TGATGATCCTTTTGTCAAACATGTTGCCATTATGCATAATATTATCCTGG
CAATTGCATCCGCCTACATGAATGTCCACGCTACTCGATCTATCATATTA
GTTTCAAAGGCTCAAACGTGGCTCGCAACTGTCTGTACGCCGGCACAAAC
TGCCGTTCCATCCCCGATTCAAGCTACATTCTATCTGTTCTATCTCAGCA
AATTTTACGAACTCCTCGATACCTTCATCTTGGTAATGCGAAACAAACCG
CTGTCCTTTCTTCACGTATGGCATCATTGTACTGTAATACTCTCTGTTTG
GGGATGGCTAGAGTATGGTGTAACAATCGGCCTTTATGGACTTTGGTTCA
ACACATTTGTTCATGTCATCATGTACACATACTTTGCATTTAGTCTGGCA
GGTGTGAAGATGCCCTTTAAACGTCTTATCACTCTTATGCAGATCATTCA
ATTTCTCACCGGCTTTGCGTCGTTGATACCTTTCTTTTGGAGTTACATCA
AGGTGGGCGGGTGTACGGGTTTACCGGGGCTCGCTGTAACCGGAACAACT
AATCTTTCATACCTTGTTTTGTTTCTGCGCTTTTACTCAAAGTCGTATAA
GTCGTCCACAAAGATTGACAAGGCATATGAAGCGAAAAAGGCGAAATGA