Gcaud1786.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1786.t1
Unique NameGcaud1786.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_472_length_24489_cov_3.453562contigNODE_472_length_24489_cov_3.453562:5519..6559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705975.1
Preferred nameSPTLC1
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02725,RC02849
KEGG koko:K00654
KEGG ReactionR01281
KEGG Pathwayko00600,ko01100,ko04071,ko04138,map00600,map01100,map04071,map04138
KEGG ModuleM00094,M00099
GOsGO:0002178,GO:0003674,GO:0003824,GO:0004758,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0007163,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0010556,GO:0012505,GO:0016020,GO:0016239,GO:0016241,GO:0016408,GO:0016409,GO:0016454,GO:0016740,GO:0016746,GO:0016747,GO:0017059,GO:0019216,GO:0019222,GO:0019637,GO:0019751,GO:0030148,GO:0031211,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031984,GO:0032991,GO:0034311,GO:0034312,GO:0034641,GO:0035088,GO:0035339,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045197,GO:0045834,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0060255,GO:0061245,GO:0065007,GO:0071704,GO:0080090,GO:0090153,GO:0090154,GO:0090407,GO:0097164,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1904502,GO:1904504,GO:1905038,GO:1905961,GO:1990234
Evalue7.78e-94
EggNOG OGsCOG0156@1|root,KOG1358@2759|Eukaryota
EC2.3.1.50
DescriptionSerine palmitoyltransferase
COG categoryH
BiGG ReactioniMM904.YMR296C,iND750.YMR296C
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1786Gcaud1786Gracilaria caudata M_176_S67 malegeneNODE_472_length_24489_cov_3.453562 5519..6559 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1786.t1.start1Gcaud1786.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_472_length_24489_cov_3.453562 5519..5521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1786.t1.CDS1Gcaud1786.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_472_length_24489_cov_3.453562 5519..6559 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1786.t1.exon1Gcaud1786.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_472_length_24489_cov_3.453562 5519..6559 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1786.t1.stop1Gcaud1786.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_472_length_24489_cov_3.453562 6557..6559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1786.t1Gcaud1786.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_472_length_24489_cov_3.453562 5519..6559 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1786.t1 ID=Gcaud1786.t1|Name=Gcaud1786.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MRDYGCGACGPRGFYGTTDLHLQCEHQVANFCRSSNAILYSFGAATSNST
IPAFCKRGDIVVVDRHINFALYSGVKLSRANMITFEHNDMHSLEAALSGV
CDKFRDKGLVQRRFIIVEAIYANSGHVAPLDRIVALKNKYKFRLLLDESF
SIGVLGNSGRGALEQFGVQRNDVEICTADLGNAIASVGGFCVGNEEVVEH
QRLSGAGYCFSASQPPFLAAAATAALSVVEQEGESLVSRLRSNVKLMKSL
LDAVELKKAGWYIDGDQLSPLLFARRFDDDADASLFTDVQKRCLDDGILV
SRPVYCDDELSVPKHAVKITVSAIHSEQMIRNAAEVLLRHLLHARD*
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spliced messenger RNA

>Gcaud1786.t1 ID=Gcaud1786.t1|Name=Gcaud1786.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:5519..6559+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGATTATGGATGCGGCGCGTGTGGGCCGCGTGGGTTTTATGGCAC
CACCGATCTTCATTTGCAATGCGAGCATCAGGTTGCCAACTTTTGTCGTT
CGTCAAATGCCATTTTGTATTCGTTTGGCGCCGCCACTTCCAACTCCACC
ATCCCGGCGTTCTGCAAGCGCGGCGATATTGTAGTCGTCGATCGTCACAT
CAATTTTGCGCTCTACTCGGGCGTCAAGCTGTCGCGCGCCAATATGATCA
CTTTTGAGCATAATGACATGCATAGTTTGGAGGCTGCGTTGAGCGGTGTG
TGCGATAAGTTTCGGGACAAGGGTTTGGTGCAGAGAAGGTTCATTATTGT
GGAGGCCATCTACGCCAACTCGGGACATGTGGCGCCTTTAGATCGTATTG
TGGCGTTGAAGAACAAGTATAAGTTTCGATTGTTGTTGGATGAGAGTTTT
TCCATTGGAGTGTTGGGGAACAGTGGACGGGGCGCGTTGGAACAGTTTGG
TGTACAGCGAAATGATGTGGAGATTTGTACCGCTGATTTGGGCAATGCCA
TTGCTTCTGTGGGCGGTTTTTGTGTGGGAAATGAAGAGGTGGTGGAACAT
CAACGTCTGTCCGGAGCTGGCTATTGTTTCTCGGCCTCTCAGCCGCCGTT
TCTGGCCGCTGCTGCCACCGCCGCGCTTTCCGTCGTCGAGCAAGAGGGAG
AGTCGCTTGTGTCTCGCCTTCGAAGCAACGTGAAGCTCATGAAATCGCTG
TTGGATGCGGTCGAATTGAAGAAAGCAGGCTGGTATATCGATGGTGATCA
ACTTTCACCGCTGTTGTTTGCGAGACGATTTGATGATGACGCCGATGCAA
GCTTGTTCACGGACGTGCAGAAACGCTGTTTGGACGATGGCATTTTGGTT
TCACGCCCTGTTTATTGTGACGATGAGCTGAGTGTTCCGAAGCATGCGGT
GAAGATTACCGTTTCGGCCATTCATTCGGAACAGATGATTCGCAATGCGG
CGGAGGTCCTCTTGCGTCATTTACTTCATGCTCGCGATTGA
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protein sequence of Gcaud1786.t1

>Gcaud1786.t1 ID=Gcaud1786.t1|Name=Gcaud1786.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MRDYGCGACGPRGFYGTTDLHLQCEHQVANFCRSSNAILYSFGAATSNST
IPAFCKRGDIVVVDRHINFALYSGVKLSRANMITFEHNDMHSLEAALSGV
CDKFRDKGLVQRRFIIVEAIYANSGHVAPLDRIVALKNKYKFRLLLDESF
SIGVLGNSGRGALEQFGVQRNDVEICTADLGNAIASVGGFCVGNEEVVEH
QRLSGAGYCFSASQPPFLAAAATAALSVVEQEGESLVSRLRSNVKLMKSL
LDAVELKKAGWYIDGDQLSPLLFARRFDDDADASLFTDVQKRCLDDGILV
SRPVYCDDELSVPKHAVKITVSAIHSEQMIRNAAEVLLRHLLHARD*
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mRNA from alignment at NODE_472_length_24489_cov_3.453562:5519..6559+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1786.t1 ID=Gcaud1786.t1|Name=Gcaud1786.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:5519..6559+ (Gracilaria caudata M_176_S67 male)
ATGCGCGATTATGGATGCGGCGCGTGTGGGCCGCGTGGGTTTTATGGCAC
CACCGATCTTCATTTGCAATGCGAGCATCAGGTTGCCAACTTTTGTCGTT
CGTCAAATGCCATTTTGTATTCGTTTGGCGCCGCCACTTCCAACTCCACC
ATCCCGGCGTTCTGCAAGCGCGGCGATATTGTAGTCGTCGATCGTCACAT
CAATTTTGCGCTCTACTCGGGCGTCAAGCTGTCGCGCGCCAATATGATCA
CTTTTGAGCATAATGACATGCATAGTTTGGAGGCTGCGTTGAGCGGTGTG
TGCGATAAGTTTCGGGACAAGGGTTTGGTGCAGAGAAGGTTCATTATTGT
GGAGGCCATCTACGCCAACTCGGGACATGTGGCGCCTTTAGATCGTATTG
TGGCGTTGAAGAACAAGTATAAGTTTCGATTGTTGTTGGATGAGAGTTTT
TCCATTGGAGTGTTGGGGAACAGTGGACGGGGCGCGTTGGAACAGTTTGG
TGTACAGCGAAATGATGTGGAGATTTGTACCGCTGATTTGGGCAATGCCA
TTGCTTCTGTGGGCGGTTTTTGTGTGGGAAATGAAGAGGTGGTGGAACAT
CAACGTCTGTCCGGAGCTGGCTATTGTTTCTCGGCCTCTCAGCCGCCGTT
TCTGGCCGCTGCTGCCACCGCCGCGCTTTCCGTCGTCGAGCAAGAGGGAG
AGTCGCTTGTGTCTCGCCTTCGAAGCAACGTGAAGCTCATGAAATCGCTG
TTGGATGCGGTCGAATTGAAGAAAGCAGGCTGGTATATCGATGGTGATCA
ACTTTCACCGCTGTTGTTTGCGAGACGATTTGATGATGACGCCGATGCAA
GCTTGTTCACGGACGTGCAGAAACGCTGTTTGGACGATGGCATTTTGGTT
TCACGCCCTGTTTATTGTGACGATGAGCTGAGTGTTCCGAAGCATGCGGT
GAAGATTACCGTTTCGGCCATTCATTCGGAACAGATGATTCGCAATGCGG
CGGAGGTCCTCTTGCGTCATTTACTTCATGCTCGCGATTGA
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Coding sequence (CDS) from alignment at NODE_472_length_24489_cov_3.453562:5519..6559+

>Gcaud1786.t1 ID=Gcaud1786.t1|Name=Gcaud1786.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_472_length_24489_cov_3.453562:5519..6559+ (Gracilaria caudata M_176_S67 male)
ATGCGCGATTATGGATGCGGCGCGTGTGGGCCGCGTGGGTTTTATGGCAC
CACCGATCTTCATTTGCAATGCGAGCATCAGGTTGCCAACTTTTGTCGTT
CGTCAAATGCCATTTTGTATTCGTTTGGCGCCGCCACTTCCAACTCCACC
ATCCCGGCGTTCTGCAAGCGCGGCGATATTGTAGTCGTCGATCGTCACAT
CAATTTTGCGCTCTACTCGGGCGTCAAGCTGTCGCGCGCCAATATGATCA
CTTTTGAGCATAATGACATGCATAGTTTGGAGGCTGCGTTGAGCGGTGTG
TGCGATAAGTTTCGGGACAAGGGTTTGGTGCAGAGAAGGTTCATTATTGT
GGAGGCCATCTACGCCAACTCGGGACATGTGGCGCCTTTAGATCGTATTG
TGGCGTTGAAGAACAAGTATAAGTTTCGATTGTTGTTGGATGAGAGTTTT
TCCATTGGAGTGTTGGGGAACAGTGGACGGGGCGCGTTGGAACAGTTTGG
TGTACAGCGAAATGATGTGGAGATTTGTACCGCTGATTTGGGCAATGCCA
TTGCTTCTGTGGGCGGTTTTTGTGTGGGAAATGAAGAGGTGGTGGAACAT
CAACGTCTGTCCGGAGCTGGCTATTGTTTCTCGGCCTCTCAGCCGCCGTT
TCTGGCCGCTGCTGCCACCGCCGCGCTTTCCGTCGTCGAGCAAGAGGGAG
AGTCGCTTGTGTCTCGCCTTCGAAGCAACGTGAAGCTCATGAAATCGCTG
TTGGATGCGGTCGAATTGAAGAAAGCAGGCTGGTATATCGATGGTGATCA
ACTTTCACCGCTGTTGTTTGCGAGACGATTTGATGATGACGCCGATGCAA
GCTTGTTCACGGACGTGCAGAAACGCTGTTTGGACGATGGCATTTTGGTT
TCACGCCCTGTTTATTGTGACGATGAGCTGAGTGTTCCGAAGCATGCGGT
GAAGATTACCGTTTCGGCCATTCATTCGGAACAGATGATTCGCAATGCGG
CGGAGGTCCTCTTGCGTCATTTACTTCATGCTCGCGATTGA
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