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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 9785.ENSLAFP00000008795 |
| Preferred name | TMEM66 |
| PFAMs | SARAF |
| Max annot lvl | 33208|Metazoa |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256 |
| Evalue | 6.27e-21 |
| EggNOG OGs | 28KQW@1|root,2QT6Y@2759|Eukaryota,38PN7@33154|Opisthokonta,3BDYH@33208|Metazoa,3CSU9@33213|Bilateria,489E2@7711|Chordata,497RR@7742|Vertebrata,3JF3W@40674|Mammalia,34VNF@311790|Afrotheria |
| Description | Store-operated calcium entry-associated regulatory |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1778.t1.stop1 | Gcaud1778.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_338_length_29361_cov_4.567031 8116..8118 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1778.t1.start1 | Gcaud1778.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_338_length_29361_cov_4.567031 8921..8923 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1778.t1 ID=Gcaud1778.t1|Name=Gcaud1778.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=201bp
MKSCLLGVAILVALTTCNASSNDTRAVTGAGTGSTSGSSNDRVLLRSITA
LIFSENGRARSRHGTGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWDG
ASIQWSCEGHLSDQVEFGPDTAVICEPYDEDQDDGYVLRGSCRLEYTINF
KKFHMTFVHVIYDCVLILGLLWCYYQSRWWMKRRLRRKHKKRTRGAQQQS
* back to topspliced messenger RNA >Gcaud1778.t1 ID=Gcaud1778.t1|Name=Gcaud1778.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=603bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:8116..8923- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGAAATCGTGTTTGCTTGGCGTCGCAATTCTCGTTGCTCTAACCACCTG
CAATGCCTCCTCAAATGATACAAGAGCGGTGACAGGCGCCGGGACCGGTT
CTACATCCGGCTCCAGTAATGACCGTGTTCTTTTGCGATCCATCACAGCT
CTAATCTTCTCTGAGAACGGCAGAGCGCGTTCGAGACACGGCACTGGCGA
ACAACAATTGCAGTGTGTTGGAGGTTCTGCGTCTGGGCTGTGGTGGTTTA
CTGAGTACTATCCGCATGCCGTGCAATGCCAGAATATTGGCTGGGATGGT
GCTAGTATACAGTGGTCTTGTGAAGGTCACTTGAGCGACCAAGTTGAATT
TGGTCCGGATACTGCGGTTATATGCGAGCCGTACGATGAAGACCAAGATG
ACGGCTACGTTTTGCGAGGTTCTTGTCGTCTGGAATACACTATAAATTTC
AAGAAGTTCCACATGACCTTCGTTCATGTCATTTACGACTGCGTGTTGAT
ACTGGGGTTATTATGGTGCTACTACCAAAGCAGATGGTGGATGAAGAGAC
GCCTAAGGCGCAAGCACAAAAAGCGTACCCGTGGTGCTCAGCAGCAGTCA
TAG back to topprotein sequence of Gcaud1778.t1 >Gcaud1778.t1 ID=Gcaud1778.t1|Name=Gcaud1778.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=201bp
MKSCLLGVAILVALTTCNASSNDTRAVTGAGTGSTSGSSNDRVLLRSITA
LIFSENGRARSRHGTGEQQLQCVGGSASGLWWFTEYYPHAVQCQNIGWDG
ASIQWSCEGHLSDQVEFGPDTAVICEPYDEDQDDGYVLRGSCRLEYTINF
KKFHMTFVHVIYDCVLILGLLWCYYQSRWWMKRRLRRKHKKRTRGAQQQS
* back to topmRNA from alignment at NODE_338_length_29361_cov_4.567031:8116..8923- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1778.t1 ID=Gcaud1778.t1|Name=Gcaud1778.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=808bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:8116..8923- (Gracilaria caudata M_176_S67 male)
ATGAAATCGTGTTTGCTTGGCGTCGCAATTCTCGTTGCTCTAACCACCTG
CAATGCCTCCTCAAATGATACAAGAGCGGTGACAGGCGCCGGGACCGGTT
CTACATCCGGCTCCAGTAATGACCGTGTTCTTTTGCGATCCATCACAGCT
CTAATCTTCTCTGAGAACGGCAGAGCGCGTTCGAGACACGGCACTGGCGA
ACAACAATTGCAGTGTGTTGGAGGTTCTGCGTCTGGGCTGTGGTGGTTTA
CTGAGTACTATCCGCATGCCGTGCAATGCCAGAATATTGGCTGGGATGGT
GCTAGTATACAGTGGTCTTGTGAAGGTCACTTGAGCGACCAAGTTGAATT
TGGTCCGGATACTGCGGTTATATGCGAGCCGTACGATGAAGACCAAGATG
ACGGCTACGTTTTGCGAGGTTCTTGTCGTCTGGAATACACTATAAATTTC
AAGAAGTTCCACATGACCTTCGTTCATGTCATTTACGGTTCGTTTCCTTT
TATGTTGGGCGTATAGAAAAGAAGCCGTTTTTTCTGGAATTGTTCCGCGG
AGCATATCTGACGTTTCTCACTTTTTTTTTTTCTTTCTCAGACTGCGTGT
TGATACTGGGGTTATTATGGTGCTACTACCAAAGCAGATGGTGGATGAAG
AGACGGTAAGCTTGTTATCACAAAGCTTTGTCATATTTTTATGTTGCGAT
GTTGTTTCCCATTTACTGACCTCGTCCGCGTCATACCATTATTCCTCGAT
GAGCAGCCTAAGGCGCAAGCACAAAAAGCGTACCCGTGGTGCTCAGCAGC
AGTCATAG back to topCoding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:8116..8923- >Gcaud1778.t1 ID=Gcaud1778.t1|Name=Gcaud1778.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=603bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:8116..8923- (Gracilaria caudata M_176_S67 male)
ATGAAATCGTGTTTGCTTGGCGTCGCAATTCTCGTTGCTCTAACCACCTG
CAATGCCTCCTCAAATGATACAAGAGCGGTGACAGGCGCCGGGACCGGTT
CTACATCCGGCTCCAGTAATGACCGTGTTCTTTTGCGATCCATCACAGCT
CTAATCTTCTCTGAGAACGGCAGAGCGCGTTCGAGACACGGCACTGGCGA
ACAACAATTGCAGTGTGTTGGAGGTTCTGCGTCTGGGCTGTGGTGGTTTA
CTGAGTACTATCCGCATGCCGTGCAATGCCAGAATATTGGCTGGGATGGT
GCTAGTATACAGTGGTCTTGTGAAGGTCACTTGAGCGACCAAGTTGAATT
TGGTCCGGATACTGCGGTTATATGCGAGCCGTACGATGAAGACCAAGATG
ACGGCTACGTTTTGCGAGGTTCTTGTCGTCTGGAATACACTATAAATTTC
AAGAAGTTCCACATGACCTTCGTTCATGTCATTTACGACTGCGTGTTGAT
ACTGGGGTTATTATGGTGCTACTACCAAAGCAGATGGTGGATGAAGAGAC
GCCTAAGGCGCAAGCACAAAAAGCGTACCCGTGGTGCTCAGCAGCAGTCA
TAG back to top
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