Gcaud1777.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1777.t1
Unique Name	Gcaud1777.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	394

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_338_length_29361_cov_4.567031	contig	NODE_338_length_29361_cov_4.567031:2981..4162 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_04473T0
Preferred name	NEP1
PFAMs	EMG1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K14568
KEGG Pathway	ko03008,map03008
GOs	GO:0000154,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005856,GO:0005874,GO:0005880,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016072,GO:0016740,GO:0016741,GO:0019843,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031167,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032991,GO:0034399,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070037,GO:0070475,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1990904
Evalue	2.15e-68
EggNOG OGs	COG1756@1\|root,KOG3073@2759\|Eukaryota,38BYT@33154\|Opisthokonta,3NXBG@4751\|Fungi
EC	2.1.1.260
Description	Nucleolar essential protein 1
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1777	Gcaud1777	Gracilaria caudata M_176_S67 male	gene	NODE_338_length_29361_cov_4.567031 2981..4162 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1777.t1.stop1	Gcaud1777.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_338_length_29361_cov_4.567031 2981..2983 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1777.t1.CDS1	Gcaud1777.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_338_length_29361_cov_4.567031 2981..4162 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1777.t1.exon1	Gcaud1777.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_338_length_29361_cov_4.567031 2981..4162 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1777.t1.start1	Gcaud1777.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_338_length_29361_cov_4.567031 4160..4162 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1777.t1	Gcaud1777.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_338_length_29361_cov_4.567031 2981..4162 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_338_length_29361_cov_4.567031:2981..4162-
coding sequence from alignment at NODE_338_length_29361_cov_4.567031:2981..4162-

mRNA sequence

>Gcaud1777.t1 ID=Gcaud1777.t1|Name=Gcaud1777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=394bp
MGSSALLRKKKRSSDTAHANGTAKRKRAQTPSPQIQPHLLNVLTGNDTPE
VEEPKPVDQHPTLQTSAKEDIKNEPRENANTSQTNDTSSSADEEGDSDGQ
DVGSQLTKKKEVDDQTQNQTAVAHRNGENNHVANVVPSNSEPPRRELPLP
LPPDHAKKIKVTVLLQNANLETVKQSGRAGGFVLLNCDDHRHLLQKTGRN
ANDARPDITHQCLLTLLDSPLNKEGRLKIYIRTAKNVLIDVHPETRIPRT
MKRFSGLMAELLEKLKVRGTSGSTPLLKVIRNPIVSHLPVGTRKIVCTYN
TENVVDIREHANAVADMVLSREQGGLKSKDKVDFNVAEHGEEVNVLYIVG
AMAHGKVVEDWADDYICISEYPLSAANVCGRITCAYENLFGIM*

spliced messenger RNA

>Gcaud1777.t1 ID=Gcaud1777.t1|Name=Gcaud1777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:2981..4162- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAGCTCAGCATTACTGCGAAAGAAGAAAAGAAGCTCTGACACAGC
ACACGCAAACGGCACGGCAAAGCGCAAGAGAGCGCAGACCCCATCGCCAC
AAATACAGCCACATTTGCTCAACGTGTTGACAGGAAATGACACACCAGAA
GTTGAAGAACCGAAACCAGTTGATCAGCATCCGACGCTGCAAACCTCAGC
AAAAGAAGATATAAAAAACGAGCCACGGGAAAATGCGAACACGAGCCAGA
CGAATGATACGAGCAGTTCTGCAGATGAAGAAGGGGACTCAGATGGCCAA
GACGTTGGCAGTCAGTTAACAAAGAAGAAAGAGGTTGATGATCAGACACA
AAATCAAACCGCAGTTGCACACCGAAACGGAGAGAACAACCATGTCGCAA
ATGTTGTGCCGTCGAACTCCGAACCCCCTCGTCGAGAATTACCACTCCCA
CTGCCACCGGATCACGCGAAGAAAATCAAAGTGACCGTACTGTTGCAAAA
TGCCAATCTAGAAACCGTCAAGCAGAGCGGGCGTGCGGGCGGTTTTGTTC
TGTTAAATTGTGACGACCATCGTCACTTATTACAAAAGACTGGTCGAAAT
GCAAATGATGCACGTCCAGATATCACTCATCAATGTCTTTTGACGCTGTT
GGATAGTCCCTTAAACAAAGAGGGTCGTTTAAAGATTTATATTCGAACGG
CAAAGAACGTCTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACT
ATGAAACGATTTTCGGGGCTGATGGCTGAACTTCTGGAGAAACTGAAGGT
GCGAGGTACCAGTGGTTCTACACCATTGTTGAAAGTCATTCGTAATCCAA
TCGTAAGTCATCTTCCTGTCGGGACGCGAAAGATCGTGTGTACATACAAC
ACTGAGAATGTGGTTGATATCCGAGAGCACGCAAACGCTGTCGCAGACAT
GGTTTTATCAAGGGAACAGGGGGGACTGAAGTCGAAGGACAAAGTGGACT
TCAATGTAGCTGAACATGGGGAGGAAGTTAATGTTTTATATATCGTTGGT
GCTATGGCACACGGAAAAGTTGTAGAGGATTGGGCAGATGATTATATTTG
TATAAGCGAGTATCCGCTCTCTGCAGCTAATGTCTGTGGTAGGATAACAT
GTGCCTATGAGAATCTCTTCGGGATCATGTAA

protein sequence of Gcaud1777.t1

>Gcaud1777.t1 ID=Gcaud1777.t1|Name=Gcaud1777.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=394bp
MGSSALLRKKKRSSDTAHANGTAKRKRAQTPSPQIQPHLLNVLTGNDTPE
VEEPKPVDQHPTLQTSAKEDIKNEPRENANTSQTNDTSSSADEEGDSDGQ
DVGSQLTKKKEVDDQTQNQTAVAHRNGENNHVANVVPSNSEPPRRELPLP
LPPDHAKKIKVTVLLQNANLETVKQSGRAGGFVLLNCDDHRHLLQKTGRN
ANDARPDITHQCLLTLLDSPLNKEGRLKIYIRTAKNVLIDVHPETRIPRT
MKRFSGLMAELLEKLKVRGTSGSTPLLKVIRNPIVSHLPVGTRKIVCTYN
TENVVDIREHANAVADMVLSREQGGLKSKDKVDFNVAEHGEEVNVLYIVG
AMAHGKVVEDWADDYICISEYPLSAANVCGRITCAYENLFGIM*

mRNA from alignment at NODE_338_length_29361_cov_4.567031:2981..4162-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1777.t1 ID=Gcaud1777.t1|Name=Gcaud1777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1182bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:2981..4162- (Gracilaria caudata M_176_S67 male)
ATGGGCAGCTCAGCATTACTGCGAAAGAAGAAAAGAAGCTCTGACACAGC
ACACGCAAACGGCACGGCAAAGCGCAAGAGAGCGCAGACCCCATCGCCAC
AAATACAGCCACATTTGCTCAACGTGTTGACAGGAAATGACACACCAGAA
GTTGAAGAACCGAAACCAGTTGATCAGCATCCGACGCTGCAAACCTCAGC
AAAAGAAGATATAAAAAACGAGCCACGGGAAAATGCGAACACGAGCCAGA
CGAATGATACGAGCAGTTCTGCAGATGAAGAAGGGGACTCAGATGGCCAA
GACGTTGGCAGTCAGTTAACAAAGAAGAAAGAGGTTGATGATCAGACACA
AAATCAAACCGCAGTTGCACACCGAAACGGAGAGAACAACCATGTCGCAA
ATGTTGTGCCGTCGAACTCCGAACCCCCTCGTCGAGAATTACCACTCCCA
CTGCCACCGGATCACGCGAAGAAAATCAAAGTGACCGTACTGTTGCAAAA
TGCCAATCTAGAAACCGTCAAGCAGAGCGGGCGTGCGGGCGGTTTTGTTC
TGTTAAATTGTGACGACCATCGTCACTTATTACAAAAGACTGGTCGAAAT
GCAAATGATGCACGTCCAGATATCACTCATCAATGTCTTTTGACGCTGTT
GGATAGTCCCTTAAACAAAGAGGGTCGTTTAAAGATTTATATTCGAACGG
CAAAGAACGTCTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACT
ATGAAACGATTTTCGGGGCTGATGGCTGAACTTCTGGAGAAACTGAAGGT
GCGAGGTACCAGTGGTTCTACACCATTGTTGAAAGTCATTCGTAATCCAA
TCGTAAGTCATCTTCCTGTCGGGACGCGAAAGATCGTGTGTACATACAAC
ACTGAGAATGTGGTTGATATCCGAGAGCACGCAAACGCTGTCGCAGACAT
GGTTTTATCAAGGGAACAGGGGGGACTGAAGTCGAAGGACAAAGTGGACT
TCAATGTAGCTGAACATGGGGAGGAAGTTAATGTTTTATATATCGTTGGT
GCTATGGCACACGGAAAAGTTGTAGAGGATTGGGCAGATGATTATATTTG
TATAAGCGAGTATCCGCTCTCTGCAGCTAATGTCTGTGGTAGGATAACAT
GTGCCTATGAGAATCTCTTCGGGATCATGTAA

Coding sequence (CDS) from alignment at NODE_338_length_29361_cov_4.567031:2981..4162-

>Gcaud1777.t1 ID=Gcaud1777.t1|Name=Gcaud1777.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1182bp|location=Sequence derived from alignment at NODE_338_length_29361_cov_4.567031:2981..4162- (Gracilaria caudata M_176_S67 male)
ATGGGCAGCTCAGCATTACTGCGAAAGAAGAAAAGAAGCTCTGACACAGC
ACACGCAAACGGCACGGCAAAGCGCAAGAGAGCGCAGACCCCATCGCCAC
AAATACAGCCACATTTGCTCAACGTGTTGACAGGAAATGACACACCAGAA
GTTGAAGAACCGAAACCAGTTGATCAGCATCCGACGCTGCAAACCTCAGC
AAAAGAAGATATAAAAAACGAGCCACGGGAAAATGCGAACACGAGCCAGA
CGAATGATACGAGCAGTTCTGCAGATGAAGAAGGGGACTCAGATGGCCAA
GACGTTGGCAGTCAGTTAACAAAGAAGAAAGAGGTTGATGATCAGACACA
AAATCAAACCGCAGTTGCACACCGAAACGGAGAGAACAACCATGTCGCAA
ATGTTGTGCCGTCGAACTCCGAACCCCCTCGTCGAGAATTACCACTCCCA
CTGCCACCGGATCACGCGAAGAAAATCAAAGTGACCGTACTGTTGCAAAA
TGCCAATCTAGAAACCGTCAAGCAGAGCGGGCGTGCGGGCGGTTTTGTTC
TGTTAAATTGTGACGACCATCGTCACTTATTACAAAAGACTGGTCGAAAT
GCAAATGATGCACGTCCAGATATCACTCATCAATGTCTTTTGACGCTGTT
GGATAGTCCCTTAAACAAAGAGGGTCGTTTAAAGATTTATATTCGAACGG
CAAAGAACGTCTTGATTGATGTGCATCCGGAAACACGAATTCCTCGTACT
ATGAAACGATTTTCGGGGCTGATGGCTGAACTTCTGGAGAAACTGAAGGT
GCGAGGTACCAGTGGTTCTACACCATTGTTGAAAGTCATTCGTAATCCAA
TCGTAAGTCATCTTCCTGTCGGGACGCGAAAGATCGTGTGTACATACAAC
ACTGAGAATGTGGTTGATATCCGAGAGCACGCAAACGCTGTCGCAGACAT
GGTTTTATCAAGGGAACAGGGGGGACTGAAGTCGAAGGACAAAGTGGACT
TCAATGTAGCTGAACATGGGGAGGAAGTTAATGTTTTATATATCGTTGGT
GCTATGGCACACGGAAAAGTTGTAGAGGATTGGGCAGATGATTATATTTG
TATAAGCGAGTATCCGCTCTCTGCAGCTAATGTCTGTGGTAGGATAACAT
GTGCCTATGAGAATCTCTTCGGGATCATGTAA