Gcaud177.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud177.t1
Unique Name	Gcaud177.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_733_length_18975_cov_3.965368	contig	NODE_733_length_18975_cov_3.965368:12097..13884 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003057247.1
PFAMs	Kelch_3,Kelch_4,LRR_8
Max annot lvl	3041\|Chlorophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0097014,GO:0099568,GO:0120025,GO:0120038
Evalue	6.57e-18
EggNOG OGs	COG4886@1\|root,KOG0379@1\|root,KOG0379@2759\|Eukaryota,KOG0619@2759\|Eukaryota,37TKH@33090\|Viridiplantae,34GZA@3041\|Chlorophyta
Description	Galactose oxidase, central domain
COG category	Z

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud177	Gcaud177	Gracilaria caudata M_176_S67 male	gene	NODE_733_length_18975_cov_3.965368 12097..13884 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud177.t1.stop1	Gcaud177.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_733_length_18975_cov_3.965368 12097..12099 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud177.t1.CDS1	Gcaud177.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_733_length_18975_cov_3.965368 12097..13884 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud177.t1.exon1	Gcaud177.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_733_length_18975_cov_3.965368 12097..13884 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud177.t1.start1	Gcaud177.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_733_length_18975_cov_3.965368 13882..13884 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud177.t1	Gcaud177.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_733_length_18975_cov_3.965368 12097..13884 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_733_length_18975_cov_3.965368:12097..13884-
coding sequence from alignment at NODE_733_length_18975_cov_3.965368:12097..13884-

mRNA sequence

>Gcaud177.t1 ID=Gcaud177.t1|Name=Gcaud177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MNITADTPAPSGQMVGGVTTDVSITGARPVVFGTALSNVGRVTASDSLPQ
GWIALVDTFGYRYYHHIASDVDVWTMPTDSTIDEAVKQDKRTARALGYST
HRHGLFRDMQSGQYEWVHPGATRLDVPTYDENSVQEQSFVTIPYEESPRT
SISFSTADLAEFHPAAFTSRISSATHEAFRIGDSGRPIRDRVVEMKWTMH
RRDNGAQRFGTEGHTLTAVNGGKTLIKFGGSAGIGGAEKAGTRLNSLHQL
DVDTMTWSAITPSGVPPIGRTGHGTVALGTDQSRLLVFGGSSPKGRLNDL
HMFHAGNETWSPVTCTGTPPGIRARMGMTVTSDGANVLVFGGRSLYRYLG
GKYYDALYVNMFHAERSQWIQMRPRGAGQRPRPRSGCVVEFINDRHMFVH
GGYDDGDRFYDDAFVFDLVSSSWHSIPYPDEPTRPKAREGHASTVMGDQV
LVYGGDSTSGLLSDLAVFESSRLRWVDTPSLVGHAPGKLCNAAMACAADE
RVVLVGGDNGFSMNHSTFCLEVSHRSVLDAKGLVEIAAERGPDARCCVVC
LDAAVSTMFLWCGHTVCCSSCSRLVRTGCPMCRAPFSEIADVVFQ*

spliced messenger RNA

>Gcaud177.t1 ID=Gcaud177.t1|Name=Gcaud177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:12097..13884- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCACCGCCGATACGCCAGCTCCTTCCGGCCAGATGGTTGGTGG
CGTCACCACAGATGTATCCATTACCGGCGCGCGTCCCGTCGTATTCGGCA
CCGCTCTCTCTAACGTCGGTCGTGTCACCGCCTCTGACTCGCTGCCACAG
GGATGGATTGCGCTTGTGGATACTTTTGGGTATAGGTATTATCATCATAT
TGCTAGTGACGTCGACGTATGGACAATGCCTACCGATTCCACCATCGACG
AGGCTGTCAAGCAGGACAAGCGAACCGCGCGAGCGTTGGGATACTCTACA
CATCGACATGGACTGTTTCGTGATATGCAAAGTGGGCAATATGAGTGGGT
GCATCCTGGCGCTACGCGACTGGATGTTCCCACCTACGATGAGAACTCTG
TGCAGGAACAAAGCTTTGTGACCATTCCTTACGAGGAATCTCCGCGTACG
TCCATCTCGTTTTCAACCGCTGATCTGGCCGAGTTTCATCCGGCGGCGTT
TACGTCGAGGATATCCAGCGCTACTCATGAGGCGTTTCGAATAGGGGACA
GTGGCAGACCCATACGTGACCGTGTGGTGGAGATGAAATGGACCATGCAT
CGACGCGATAATGGCGCGCAGCGCTTTGGAACTGAGGGGCATACGTTGAC
GGCGGTGAATGGCGGTAAAACGCTCATTAAGTTTGGCGGCTCTGCGGGGA
TTGGAGGCGCTGAGAAGGCGGGTACCAGACTCAACTCGTTGCACCAACTT
GATGTAGACACTATGACGTGGAGCGCTATCACGCCCTCTGGGGTACCTCC
CATTGGTAGAACGGGACATGGCACTGTGGCGCTTGGCACAGATCAAAGTC
GATTGCTGGTGTTTGGCGGCAGCTCGCCAAAGGGACGCTTGAATGACCTG
CATATGTTCCACGCTGGAAATGAAACGTGGTCGCCCGTGACTTGTACTGG
TACACCGCCTGGCATCCGCGCACGAATGGGCATGACGGTGACGTCGGATG
GCGCGAACGTATTGGTGTTTGGGGGGCGTTCCCTGTATCGCTATCTCGGT
GGTAAGTATTACGATGCGTTGTATGTGAATATGTTCCATGCAGAACGGTC
ACAATGGATTCAGATGAGACCGCGGGGCGCGGGGCAACGTCCACGACCTC
GCAGTGGGTGCGTTGTGGAGTTTATCAACGATAGACATATGTTTGTGCAT
GGCGGGTATGATGATGGTGATCGCTTTTATGATGATGCGTTTGTGTTTGA
CCTGGTGAGCTCTTCTTGGCATTCGATCCCGTACCCGGATGAACCGACGA
GACCGAAGGCGAGAGAGGGTCATGCGTCGACGGTGATGGGAGATCAGGTA
TTGGTGTACGGTGGAGATTCTACGTCGGGGCTGTTGAGTGACCTGGCGGT
GTTTGAGAGCAGTCGGTTGCGATGGGTTGACACGCCCAGCTTGGTGGGAC
ACGCGCCGGGGAAACTGTGCAACGCGGCTATGGCGTGCGCGGCGGATGAG
CGGGTGGTGCTTGTGGGTGGTGATAACGGGTTTAGTATGAACCACTCCAC
GTTTTGTTTGGAGGTGTCGCATCGGTCGGTGCTGGACGCCAAGGGATTGG
TGGAGATTGCGGCGGAGAGAGGACCGGATGCGAGGTGTTGCGTGGTTTGT
TTGGATGCGGCGGTGAGCACGATGTTCTTGTGGTGTGGACATACGGTGTG
TTGTTCGTCTTGCTCCAGATTGGTGAGAACGGGGTGTCCGATGTGTCGCG
CGCCGTTCTCGGAGATTGCGGATGTTGTGTTTCAATAG

protein sequence of Gcaud177.t1

>Gcaud177.t1 ID=Gcaud177.t1|Name=Gcaud177.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MNITADTPAPSGQMVGGVTTDVSITGARPVVFGTALSNVGRVTASDSLPQ
GWIALVDTFGYRYYHHIASDVDVWTMPTDSTIDEAVKQDKRTARALGYST
HRHGLFRDMQSGQYEWVHPGATRLDVPTYDENSVQEQSFVTIPYEESPRT
SISFSTADLAEFHPAAFTSRISSATHEAFRIGDSGRPIRDRVVEMKWTMH
RRDNGAQRFGTEGHTLTAVNGGKTLIKFGGSAGIGGAEKAGTRLNSLHQL
DVDTMTWSAITPSGVPPIGRTGHGTVALGTDQSRLLVFGGSSPKGRLNDL
HMFHAGNETWSPVTCTGTPPGIRARMGMTVTSDGANVLVFGGRSLYRYLG
GKYYDALYVNMFHAERSQWIQMRPRGAGQRPRPRSGCVVEFINDRHMFVH
GGYDDGDRFYDDAFVFDLVSSSWHSIPYPDEPTRPKAREGHASTVMGDQV
LVYGGDSTSGLLSDLAVFESSRLRWVDTPSLVGHAPGKLCNAAMACAADE
RVVLVGGDNGFSMNHSTFCLEVSHRSVLDAKGLVEIAAERGPDARCCVVC
LDAAVSTMFLWCGHTVCCSSCSRLVRTGCPMCRAPFSEIADVVFQ*

mRNA from alignment at NODE_733_length_18975_cov_3.965368:12097..13884-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud177.t1 ID=Gcaud177.t1|Name=Gcaud177.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:12097..13884- (Gracilaria caudata M_176_S67 male)
ATGAACATCACCGCCGATACGCCAGCTCCTTCCGGCCAGATGGTTGGTGG
CGTCACCACAGATGTATCCATTACCGGCGCGCGTCCCGTCGTATTCGGCA
CCGCTCTCTCTAACGTCGGTCGTGTCACCGCCTCTGACTCGCTGCCACAG
GGATGGATTGCGCTTGTGGATACTTTTGGGTATAGGTATTATCATCATAT
TGCTAGTGACGTCGACGTATGGACAATGCCTACCGATTCCACCATCGACG
AGGCTGTCAAGCAGGACAAGCGAACCGCGCGAGCGTTGGGATACTCTACA
CATCGACATGGACTGTTTCGTGATATGCAAAGTGGGCAATATGAGTGGGT
GCATCCTGGCGCTACGCGACTGGATGTTCCCACCTACGATGAGAACTCTG
TGCAGGAACAAAGCTTTGTGACCATTCCTTACGAGGAATCTCCGCGTACG
TCCATCTCGTTTTCAACCGCTGATCTGGCCGAGTTTCATCCGGCGGCGTT
TACGTCGAGGATATCCAGCGCTACTCATGAGGCGTTTCGAATAGGGGACA
GTGGCAGACCCATACGTGACCGTGTGGTGGAGATGAAATGGACCATGCAT
CGACGCGATAATGGCGCGCAGCGCTTTGGAACTGAGGGGCATACGTTGAC
GGCGGTGAATGGCGGTAAAACGCTCATTAAGTTTGGCGGCTCTGCGGGGA
TTGGAGGCGCTGAGAAGGCGGGTACCAGACTCAACTCGTTGCACCAACTT
GATGTAGACACTATGACGTGGAGCGCTATCACGCCCTCTGGGGTACCTCC
CATTGGTAGAACGGGACATGGCACTGTGGCGCTTGGCACAGATCAAAGTC
GATTGCTGGTGTTTGGCGGCAGCTCGCCAAAGGGACGCTTGAATGACCTG
CATATGTTCCACGCTGGAAATGAAACGTGGTCGCCCGTGACTTGTACTGG
TACACCGCCTGGCATCCGCGCACGAATGGGCATGACGGTGACGTCGGATG
GCGCGAACGTATTGGTGTTTGGGGGGCGTTCCCTGTATCGCTATCTCGGT
GGTAAGTATTACGATGCGTTGTATGTGAATATGTTCCATGCAGAACGGTC
ACAATGGATTCAGATGAGACCGCGGGGCGCGGGGCAACGTCCACGACCTC
GCAGTGGGTGCGTTGTGGAGTTTATCAACGATAGACATATGTTTGTGCAT
GGCGGGTATGATGATGGTGATCGCTTTTATGATGATGCGTTTGTGTTTGA
CCTGGTGAGCTCTTCTTGGCATTCGATCCCGTACCCGGATGAACCGACGA
GACCGAAGGCGAGAGAGGGTCATGCGTCGACGGTGATGGGAGATCAGGTA
TTGGTGTACGGTGGAGATTCTACGTCGGGGCTGTTGAGTGACCTGGCGGT
GTTTGAGAGCAGTCGGTTGCGATGGGTTGACACGCCCAGCTTGGTGGGAC
ACGCGCCGGGGAAACTGTGCAACGCGGCTATGGCGTGCGCGGCGGATGAG
CGGGTGGTGCTTGTGGGTGGTGATAACGGGTTTAGTATGAACCACTCCAC
GTTTTGTTTGGAGGTGTCGCATCGGTCGGTGCTGGACGCCAAGGGATTGG
TGGAGATTGCGGCGGAGAGAGGACCGGATGCGAGGTGTTGCGTGGTTTGT
TTGGATGCGGCGGTGAGCACGATGTTCTTGTGGTGTGGACATACGGTGTG
TTGTTCGTCTTGCTCCAGATTGGTGAGAACGGGGTGTCCGATGTGTCGCG
CGCCGTTCTCGGAGATTGCGGATGTTGTGTTTCAATAG

Coding sequence (CDS) from alignment at NODE_733_length_18975_cov_3.965368:12097..13884-

>Gcaud177.t1 ID=Gcaud177.t1|Name=Gcaud177.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_733_length_18975_cov_3.965368:12097..13884- (Gracilaria caudata M_176_S67 male)
ATGAACATCACCGCCGATACGCCAGCTCCTTCCGGCCAGATGGTTGGTGG
CGTCACCACAGATGTATCCATTACCGGCGCGCGTCCCGTCGTATTCGGCA
CCGCTCTCTCTAACGTCGGTCGTGTCACCGCCTCTGACTCGCTGCCACAG
GGATGGATTGCGCTTGTGGATACTTTTGGGTATAGGTATTATCATCATAT
TGCTAGTGACGTCGACGTATGGACAATGCCTACCGATTCCACCATCGACG
AGGCTGTCAAGCAGGACAAGCGAACCGCGCGAGCGTTGGGATACTCTACA
CATCGACATGGACTGTTTCGTGATATGCAAAGTGGGCAATATGAGTGGGT
GCATCCTGGCGCTACGCGACTGGATGTTCCCACCTACGATGAGAACTCTG
TGCAGGAACAAAGCTTTGTGACCATTCCTTACGAGGAATCTCCGCGTACG
TCCATCTCGTTTTCAACCGCTGATCTGGCCGAGTTTCATCCGGCGGCGTT
TACGTCGAGGATATCCAGCGCTACTCATGAGGCGTTTCGAATAGGGGACA
GTGGCAGACCCATACGTGACCGTGTGGTGGAGATGAAATGGACCATGCAT
CGACGCGATAATGGCGCGCAGCGCTTTGGAACTGAGGGGCATACGTTGAC
GGCGGTGAATGGCGGTAAAACGCTCATTAAGTTTGGCGGCTCTGCGGGGA
TTGGAGGCGCTGAGAAGGCGGGTACCAGACTCAACTCGTTGCACCAACTT
GATGTAGACACTATGACGTGGAGCGCTATCACGCCCTCTGGGGTACCTCC
CATTGGTAGAACGGGACATGGCACTGTGGCGCTTGGCACAGATCAAAGTC
GATTGCTGGTGTTTGGCGGCAGCTCGCCAAAGGGACGCTTGAATGACCTG
CATATGTTCCACGCTGGAAATGAAACGTGGTCGCCCGTGACTTGTACTGG
TACACCGCCTGGCATCCGCGCACGAATGGGCATGACGGTGACGTCGGATG
GCGCGAACGTATTGGTGTTTGGGGGGCGTTCCCTGTATCGCTATCTCGGT
GGTAAGTATTACGATGCGTTGTATGTGAATATGTTCCATGCAGAACGGTC
ACAATGGATTCAGATGAGACCGCGGGGCGCGGGGCAACGTCCACGACCTC
GCAGTGGGTGCGTTGTGGAGTTTATCAACGATAGACATATGTTTGTGCAT
GGCGGGTATGATGATGGTGATCGCTTTTATGATGATGCGTTTGTGTTTGA
CCTGGTGAGCTCTTCTTGGCATTCGATCCCGTACCCGGATGAACCGACGA
GACCGAAGGCGAGAGAGGGTCATGCGTCGACGGTGATGGGAGATCAGGTA
TTGGTGTACGGTGGAGATTCTACGTCGGGGCTGTTGAGTGACCTGGCGGT
GTTTGAGAGCAGTCGGTTGCGATGGGTTGACACGCCCAGCTTGGTGGGAC
ACGCGCCGGGGAAACTGTGCAACGCGGCTATGGCGTGCGCGGCGGATGAG
CGGGTGGTGCTTGTGGGTGGTGATAACGGGTTTAGTATGAACCACTCCAC
GTTTTGTTTGGAGGTGTCGCATCGGTCGGTGCTGGACGCCAAGGGATTGG
TGGAGATTGCGGCGGAGAGAGGACCGGATGCGAGGTGTTGCGTGGTTTGT
TTGGATGCGGCGGTGAGCACGATGTTCTTGTGGTGTGGACATACGGTGTG
TTGTTCGTCTTGCTCCAGATTGGTGAGAACGGGGTGTCCGATGTGTCGCG
CGCCGTTCTCGGAGATTGCGGATGTTGTGTTTCAATAG