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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 329726.AM1_3733 |
| Preferred name | ndk |
| PFAMs | NDK |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K00940 |
| KEGG Reaction | R00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895 |
| KEGG Pathway | ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016 |
| KEGG Module | M00049,M00050,M00052,M00053 |
| GOs | GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360 |
| Evalue | 5.27e-70 |
| EggNOG OGs | COG0105@1|root,COG0105@2|Bacteria,1G4ZN@1117|Cyanobacteria |
| EC | 2.7.4.6 |
| Description | Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate |
| COG category | F |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1742.t1.stop1 | Gcaud1742.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1608_length_9502_cov_3.964935 5576..5578 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud1742.t1.start1 | Gcaud1742.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1608_length_9502_cov_3.964935 6219..6221 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1742.t1 ID=Gcaud1742.t1|Name=Gcaud1742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=153bp
MARTERTFIAVKPDGMNRGILGAIVSRFENKGYKLVGIKTLVPTKQLAEE
HYAALKAKPFFNDLVEFITSGPVCAMVWEGEQVVVTARKMIGETNPLSSA
PGTIRGDYAVDVGRNVIHGSDAVETAEREIGLWFGENELTSWQPTSSVWI
YE* back to topspliced messenger RNA >Gcaud1742.t1 ID=Gcaud1742.t1|Name=Gcaud1742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=459bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:5576..6221- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCTCGCACTGAAAGAACGTTTATTGCAGTAAAACCGGATGGTATGAA
CCGCGGAATTCTAGGCGCCATTGTCTCCCGTTTCGAGAACAAAGGCTACA
AACTAGTGGGTATCAAAACCTTGGTGCCCACCAAGCAGCTTGCGGAAGAG
CACTACGCTGCTCTCAAGGCAAAACCGTTCTTCAATGATCTCGTGGAATT
CATCACAAGTGGACCGGTGTGTGCTATGGTTTGGGAGGGTGAACAGGTTG
TGGTTACCGCTCGCAAAATGATTGGCGAGACCAATCCGCTAAGCAGTGCA
CCGGGCACTATTCGCGGCGATTATGCCGTCGACGTTGGTCGCAACGTAAT
TCATGGATCCGATGCCGTTGAGACCGCAGAACGTGAGATTGGCCTTTGGT
TCGGAGAAAATGAGCTCACTAGCTGGCAACCGACATCCTCCGTATGGATA
TACGAATAG back to topprotein sequence of Gcaud1742.t1 >Gcaud1742.t1 ID=Gcaud1742.t1|Name=Gcaud1742.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=153bp
MARTERTFIAVKPDGMNRGILGAIVSRFENKGYKLVGIKTLVPTKQLAEE
HYAALKAKPFFNDLVEFITSGPVCAMVWEGEQVVVTARKMIGETNPLSSA
PGTIRGDYAVDVGRNVIHGSDAVETAEREIGLWFGENELTSWQPTSSVWI
YE* back to topmRNA from alignment at NODE_1608_length_9502_cov_3.964935:5576..6221- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1742.t1 ID=Gcaud1742.t1|Name=Gcaud1742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=646bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:5576..6221- (Gracilaria caudata M_176_S67 male)
ATGGCTCGCACTGAAAGAACGTTTATTGCAGTAAAACCGGATGGTATGAA
CCGCGGAATTCTAGGCGCCATTGTCTCCCGTTTCGAGAACAAAGGCTACA
AACTAGTGGGTATCAAAACCTTGGTGCCCACCAAGCAGCTTGCGGAAGAG
CACTACGCTGCTCTCAAGGCAAAACCGTTCTTCAATGATCTCGTGGAATT
CATCACAAGTGGACCGGTGTGTGCTATGGTTTGGGAGGGTGAACAGGTTG
TGGTTACCGCTCGCAAAATGATTGGCGAGACCAATCCGCTAAGCAGTGCA
CCGGGCACTATTCGCGGCGATTATGCCGTCGACGTTGGTCGCAAGTAAGT
TGCAGCATAATCTGCGTGCATGTGTTACTGATTGACGGACAATCTAACTC
GCGTGTACTCCACTCGTGCTCGTTTTATCACTCCAAAACATGCTCAAACC
AGCGTAATTCAGTAAGTCAATCCATTCATCCATGTGTTCAATCTCCGGCA
GATCTCTAACCAATACGACAACGAACGCCCTGAACCGAAGTGGATCCGAT
GCCGTTGAGACCGCAGAACGTGAGATTGGCCTTTGGTTCGGAGAAAATGA
GCTCACTAGCTGGCAACCGACATCCTCCGTATGGATATACGAATAG back to topCoding sequence (CDS) from alignment at NODE_1608_length_9502_cov_3.964935:5576..6221- >Gcaud1742.t1 ID=Gcaud1742.t1|Name=Gcaud1742.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=459bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:5576..6221- (Gracilaria caudata M_176_S67 male)
ATGGCTCGCACTGAAAGAACGTTTATTGCAGTAAAACCGGATGGTATGAA
CCGCGGAATTCTAGGCGCCATTGTCTCCCGTTTCGAGAACAAAGGCTACA
AACTAGTGGGTATCAAAACCTTGGTGCCCACCAAGCAGCTTGCGGAAGAG
CACTACGCTGCTCTCAAGGCAAAACCGTTCTTCAATGATCTCGTGGAATT
CATCACAAGTGGACCGGTGTGTGCTATGGTTTGGGAGGGTGAACAGGTTG
TGGTTACCGCTCGCAAAATGATTGGCGAGACCAATCCGCTAAGCAGTGCA
CCGGGCACTATTCGCGGCGATTATGCCGTCGACGTTGGTCGCAACGTAAT
TCATGGATCCGATGCCGTTGAGACCGCAGAACGTGAGATTGGCCTTTGGT
TCGGAGAAAATGAGCTCACTAGCTGGCAACCGACATCCTCCGTATGGATA
TACGAATAG back to top
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