Gcaud1740.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1740.t1
Unique NameGcaud1740.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1608_length_9502_cov_3.964935contigNODE_1608_length_9502_cov_3.964935:1925..2286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1740Gcaud1740Gracilaria caudata M_176_S67 malegeneNODE_1608_length_9502_cov_3.964935 1925..2286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1Gcaud1740.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1608_length_9502_cov_3.964935 1925..2286 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1.stop1Gcaud1740.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1608_length_9502_cov_3.964935 1925..1927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1.CDS1Gcaud1740.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1608_length_9502_cov_3.964935 1925..2093 -
Gcaud1740.t1.CDS2Gcaud1740.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1608_length_9502_cov_3.964935 2216..2286 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1.exon1Gcaud1740.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1608_length_9502_cov_3.964935 1925..2093 -
Gcaud1740.t1.exon2Gcaud1740.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1608_length_9502_cov_3.964935 2216..2286 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1.intron1Gcaud1740.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1608_length_9502_cov_3.964935 2094..2215 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1740.t1.start1Gcaud1740.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1608_length_9502_cov_3.964935 2284..2286 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1740.t1 ID=Gcaud1740.t1|Name=Gcaud1740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=80bp
MQIHIYHTYNRTSNNHTVDKHSFDQTKLQLQRANSAFKKSGIHAFKHVPH
SFPPLSNPKPFHRTYSNNQLVEHVHLPLH*
back to top

spliced messenger RNA

>Gcaud1740.t1 ID=Gcaud1740.t1|Name=Gcaud1740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:1925..2286- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATACACATATACCACACTTACAACAGAACGTCAAACAACCACAC
CGTAGATAAGCATTCATTCGATCAAACCAAACTACAACTACAAAGGGCAA
ACTCTGCCTTCAAAAAAAGTGGTATCCATGCTTTCAAACATGTCCCACAC
TCTTTCCCCCCATTGTCAAACCCAAAACCTTTCCATCGCACATATTCCAA
CAACCAGCTGGTTGAGCACGTACACCTTCCCCTACACTAA
back to top

protein sequence of Gcaud1740.t1

>Gcaud1740.t1 ID=Gcaud1740.t1|Name=Gcaud1740.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=80bp
MQIHIYHTYNRTSNNHTVDKHSFDQTKLQLQRANSAFKKSGIHAFKHVPH
SFPPLSNPKPFHRTYSNNQLVEHVHLPLH*
back to top

mRNA from alignment at NODE_1608_length_9502_cov_3.964935:1925..2286-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1740.t1 ID=Gcaud1740.t1|Name=Gcaud1740.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:1925..2286- (Gracilaria caudata M_176_S67 male)
ATGCAAATACACATATACCACACTTACAACAGAACGTCAAACAACCACAC
CGTAGATAAGCATTCATTCGAGTACGTACAACATCTCACAGCTATCTCCG
ACATTCGTGATCTTCACGAATATCGGGCCTGATATTCGATTCGCAAGCGC
GCTCTGGATCACGCAAAGCTCAATGTTAACGTTTTTTCATCAGTCAAACC
AAACTACAACTACAAAGGGCAAACTCTGCCTTCAAAAAAAGTGGTATCCA
TGCTTTCAAACATGTCCCACACTCTTTCCCCCCATTGTCAAACCCAAAAC
CTTTCCATCGCACATATTCCAACAACCAGCTGGTTGAGCACGTACACCTT
CCCCTACACTAA
back to top

Coding sequence (CDS) from alignment at NODE_1608_length_9502_cov_3.964935:1925..2286-

>Gcaud1740.t1 ID=Gcaud1740.t1|Name=Gcaud1740.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=240bp|location=Sequence derived from alignment at NODE_1608_length_9502_cov_3.964935:1925..2286- (Gracilaria caudata M_176_S67 male)
ATGCAAATACACATATACCACACTTACAACAGAACGTCAAACAACCACAC
CGTAGATAAGCATTCATTCGATCAAACCAAACTACAACTACAAAGGGCAA
ACTCTGCCTTCAAAAAAAGTGGTATCCATGCTTTCAAACATGTCCCACAC
TCTTTCCCCCCATTGTCAAACCCAAAACCTTTCCATCGCACATATTCCAA
CAACCAGCTGGTTGAGCACGTACACCTTCCCCTACACTAA
back to top