Gcaud1708.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1708.t1
Unique Name	Gcaud1708.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	650

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_851_length_17024_cov_4.098683	contig	NODE_851_length_17024_cov_4.098683:5293..7242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1708	Gcaud1708	Gracilaria caudata M_176_S67 male	gene	NODE_851_length_17024_cov_4.098683 5293..7242 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1708.t1.start1	Gcaud1708.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_851_length_17024_cov_4.098683 5293..5295 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1708.t1.CDS1	Gcaud1708.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_851_length_17024_cov_4.098683 5293..7242 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1708.t1.exon1	Gcaud1708.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_851_length_17024_cov_4.098683 5293..7242 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1708.t1.stop1	Gcaud1708.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_851_length_17024_cov_4.098683 7240..7242 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1708.t1	Gcaud1708.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_851_length_17024_cov_4.098683 5293..7242 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+
coding sequence from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+

mRNA sequence

>Gcaud1708.t1 ID=Gcaud1708.t1|Name=Gcaud1708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=650bp
MQSKGSEDKAKLAASSSEPPIDNDDDVNNIDIEHLAELLSPLPLDVLHRE
RSYQSGQVSTYIQGFESFQRFCVENQDTLTQASQKFAGISNPAERTLNLD
ICYAAKQDHDIVILEDKNGIKVQMPADETKAPLVQHIASPQVDLLVSFRV
RAYSGRKVIGLPLVITEDDLVQTTSGLLNSTLMLSARCDCGVIRPGMPII
EPENAVSAAFFFRVAYAVAPLLPCGCDTDRRLSDSEEDENWYAALCTILL
YVVDLYLTLPRTVGFLNARYEDIHVQFEDMRLKCNVENASVSSMRAAALL
LTKVCNIYADVEDFDDDNSSDSSAAEQRILTTREEIIERAVHLTCIDGSR
MAIAWLCYNKLSNGSPEDIIIGAQNAELRHALLYMDYKEVETLCGKTKLE
LEPACMPVVHEIVTKMQSILHAAGSAEGVAMIQEPRFLKRLGIRCIPRQR
LESIRFHSENEISHEYKGSMRTIAVTKEGAVIAFRKRKRFIRKLLQGVNS
LSVLGNGISWDFSSLLDDSFPGDSETVNDALQWKFGPEVFHFVLSKIMTG
HIHVCSKSPAASFAPSSSKRDVGVLIWSLLDNRLWREQTFIISKHKNKKR
LELYWLSAEGMNYFRVHRKVDGLYRFEETGSTVGQRMFRCAAIFPDKVE*

spliced messenger RNA

>Gcaud1708.t1 ID=Gcaud1708.t1|Name=Gcaud1708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCAAAGGGATCCGAAGATAAAGCCAAATTGGCCGCCTCATCTTC
AGAGCCCCCAATCGACAATGATGACGATGTCAACAATATCGATATTGAAC
ACCTGGCCGAACTGCTCTCCCCGCTCCCTCTCGATGTTCTGCACAGAGAG
CGTTCGTATCAGAGTGGTCAAGTGTCAACTTACATTCAGGGCTTTGAGTC
CTTCCAACGCTTTTGTGTTGAGAACCAGGACACGCTCACACAGGCATCGC
AAAAGTTTGCAGGCATCAGCAATCCTGCAGAACGCACTCTCAATCTCGAC
ATTTGCTATGCCGCCAAGCAGGACCACGATATTGTCATCCTGGAAGACAA
AAATGGAATCAAGGTGCAAATGCCTGCGGACGAGACGAAGGCGCCGCTCG
TACAGCATATTGCATCACCGCAAGTCGATTTGCTCGTGTCGTTCCGCGTG
CGGGCGTATAGTGGACGGAAGGTGATAGGGCTTCCTCTCGTTATCACGGA
GGATGATTTGGTGCAAACGACCTCAGGGTTGCTCAACTCAACGCTGATGC
TCTCTGCACGCTGTGACTGCGGCGTCATTCGTCCTGGCATGCCAATCATC
GAGCCAGAAAACGCCGTATCAGCGGCGTTCTTCTTTCGCGTCGCTTATGC
GGTTGCACCCCTGCTGCCATGCGGCTGCGATACAGATCGACGACTTTCTG
ATTCGGAGGAGGATGAAAATTGGTATGCGGCGTTGTGTACTATACTTTTG
TACGTCGTAGACTTGTACTTGACGCTGCCAAGAACGGTGGGCTTCCTTAA
TGCCCGTTACGAAGACATTCATGTGCAGTTTGAAGACATGAGACTTAAGT
GCAACGTAGAGAACGCAAGTGTATCTTCCATGCGTGCGGCTGCGTTGCTG
CTCACAAAAGTGTGCAACATATACGCAGACGTTGAAGATTTCGATGATGA
TAACTCTTCAGATAGCTCTGCGGCAGAACAACGAATCTTAACCACTCGGG
AAGAGATAATCGAACGTGCTGTTCACCTAACGTGTATTGATGGATCTCGT
ATGGCAATTGCCTGGCTGTGCTACAACAAACTTTCCAACGGAAGCCCAGA
AGACATAATAATCGGCGCGCAGAACGCTGAGCTTCGGCATGCCCTTCTGT
ACATGGACTACAAAGAAGTTGAGACCTTGTGCGGGAAAACGAAACTAGAA
CTCGAGCCTGCATGCATGCCTGTCGTCCATGAGATTGTCACAAAAATGCA
ATCGATACTTCACGCTGCAGGTAGCGCGGAAGGTGTAGCAATGATTCAAG
AACCGAGGTTTCTCAAGCGACTGGGTATTCGGTGTATTCCCCGCCAGCGT
TTGGAGTCGATCCGATTCCATAGTGAGAATGAGATCTCACATGAATACAA
AGGTTCTATGCGCACTATCGCAGTAACGAAAGAAGGCGCCGTGATTGCGT
TCCGAAAACGCAAAAGATTCATCCGCAAGTTGCTGCAAGGCGTGAACTCT
TTGAGTGTGCTTGGAAACGGGATTTCATGGGACTTCTCATCGCTACTGGA
TGATAGTTTTCCTGGAGATAGTGAGACCGTGAACGATGCTTTACAATGGA
AGTTTGGACCAGAAGTGTTCCATTTCGTGTTGAGCAAAATCATGACGGGG
CACATCCACGTATGTAGCAAGTCGCCGGCGGCGAGTTTCGCGCCGAGCTC
TTCAAAGCGCGATGTTGGAGTGTTGATTTGGTCTCTTCTTGACAATCGCC
TCTGGAGAGAGCAAACATTTATTATTAGCAAGCACAAGAACAAAAAGAGG
TTGGAATTGTACTGGCTTTCTGCCGAAGGAATGAACTACTTTAGGGTTCA
CAGGAAAGTTGACGGACTTTATCGGTTTGAAGAAACTGGCTCGACGGTTG
GTCAGAGAATGTTCAGGTGCGCAGCTATATTCCCGGACAAAGTAGAATGA

protein sequence of Gcaud1708.t1

>Gcaud1708.t1 ID=Gcaud1708.t1|Name=Gcaud1708.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=650bp
MQSKGSEDKAKLAASSSEPPIDNDDDVNNIDIEHLAELLSPLPLDVLHRE
RSYQSGQVSTYIQGFESFQRFCVENQDTLTQASQKFAGISNPAERTLNLD
ICYAAKQDHDIVILEDKNGIKVQMPADETKAPLVQHIASPQVDLLVSFRV
RAYSGRKVIGLPLVITEDDLVQTTSGLLNSTLMLSARCDCGVIRPGMPII
EPENAVSAAFFFRVAYAVAPLLPCGCDTDRRLSDSEEDENWYAALCTILL
YVVDLYLTLPRTVGFLNARYEDIHVQFEDMRLKCNVENASVSSMRAAALL
LTKVCNIYADVEDFDDDNSSDSSAAEQRILTTREEIIERAVHLTCIDGSR
MAIAWLCYNKLSNGSPEDIIIGAQNAELRHALLYMDYKEVETLCGKTKLE
LEPACMPVVHEIVTKMQSILHAAGSAEGVAMIQEPRFLKRLGIRCIPRQR
LESIRFHSENEISHEYKGSMRTIAVTKEGAVIAFRKRKRFIRKLLQGVNS
LSVLGNGISWDFSSLLDDSFPGDSETVNDALQWKFGPEVFHFVLSKIMTG
HIHVCSKSPAASFAPSSSKRDVGVLIWSLLDNRLWREQTFIISKHKNKKR
LELYWLSAEGMNYFRVHRKVDGLYRFEETGSTVGQRMFRCAAIFPDKVE*

mRNA from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1708.t1 ID=Gcaud1708.t1|Name=Gcaud1708.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+ (Gracilaria caudata M_176_S67 male)
ATGCAATCAAAGGGATCCGAAGATAAAGCCAAATTGGCCGCCTCATCTTC
AGAGCCCCCAATCGACAATGATGACGATGTCAACAATATCGATATTGAAC
ACCTGGCCGAACTGCTCTCCCCGCTCCCTCTCGATGTTCTGCACAGAGAG
CGTTCGTATCAGAGTGGTCAAGTGTCAACTTACATTCAGGGCTTTGAGTC
CTTCCAACGCTTTTGTGTTGAGAACCAGGACACGCTCACACAGGCATCGC
AAAAGTTTGCAGGCATCAGCAATCCTGCAGAACGCACTCTCAATCTCGAC
ATTTGCTATGCCGCCAAGCAGGACCACGATATTGTCATCCTGGAAGACAA
AAATGGAATCAAGGTGCAAATGCCTGCGGACGAGACGAAGGCGCCGCTCG
TACAGCATATTGCATCACCGCAAGTCGATTTGCTCGTGTCGTTCCGCGTG
CGGGCGTATAGTGGACGGAAGGTGATAGGGCTTCCTCTCGTTATCACGGA
GGATGATTTGGTGCAAACGACCTCAGGGTTGCTCAACTCAACGCTGATGC
TCTCTGCACGCTGTGACTGCGGCGTCATTCGTCCTGGCATGCCAATCATC
GAGCCAGAAAACGCCGTATCAGCGGCGTTCTTCTTTCGCGTCGCTTATGC
GGTTGCACCCCTGCTGCCATGCGGCTGCGATACAGATCGACGACTTTCTG
ATTCGGAGGAGGATGAAAATTGGTATGCGGCGTTGTGTACTATACTTTTG
TACGTCGTAGACTTGTACTTGACGCTGCCAAGAACGGTGGGCTTCCTTAA
TGCCCGTTACGAAGACATTCATGTGCAGTTTGAAGACATGAGACTTAAGT
GCAACGTAGAGAACGCAAGTGTATCTTCCATGCGTGCGGCTGCGTTGCTG
CTCACAAAAGTGTGCAACATATACGCAGACGTTGAAGATTTCGATGATGA
TAACTCTTCAGATAGCTCTGCGGCAGAACAACGAATCTTAACCACTCGGG
AAGAGATAATCGAACGTGCTGTTCACCTAACGTGTATTGATGGATCTCGT
ATGGCAATTGCCTGGCTGTGCTACAACAAACTTTCCAACGGAAGCCCAGA
AGACATAATAATCGGCGCGCAGAACGCTGAGCTTCGGCATGCCCTTCTGT
ACATGGACTACAAAGAAGTTGAGACCTTGTGCGGGAAAACGAAACTAGAA
CTCGAGCCTGCATGCATGCCTGTCGTCCATGAGATTGTCACAAAAATGCA
ATCGATACTTCACGCTGCAGGTAGCGCGGAAGGTGTAGCAATGATTCAAG
AACCGAGGTTTCTCAAGCGACTGGGTATTCGGTGTATTCCCCGCCAGCGT
TTGGAGTCGATCCGATTCCATAGTGAGAATGAGATCTCACATGAATACAA
AGGTTCTATGCGCACTATCGCAGTAACGAAAGAAGGCGCCGTGATTGCGT
TCCGAAAACGCAAAAGATTCATCCGCAAGTTGCTGCAAGGCGTGAACTCT
TTGAGTGTGCTTGGAAACGGGATTTCATGGGACTTCTCATCGCTACTGGA
TGATAGTTTTCCTGGAGATAGTGAGACCGTGAACGATGCTTTACAATGGA
AGTTTGGACCAGAAGTGTTCCATTTCGTGTTGAGCAAAATCATGACGGGG
CACATCCACGTATGTAGCAAGTCGCCGGCGGCGAGTTTCGCGCCGAGCTC
TTCAAAGCGCGATGTTGGAGTGTTGATTTGGTCTCTTCTTGACAATCGCC
TCTGGAGAGAGCAAACATTTATTATTAGCAAGCACAAGAACAAAAAGAGG
TTGGAATTGTACTGGCTTTCTGCCGAAGGAATGAACTACTTTAGGGTTCA
CAGGAAAGTTGACGGACTTTATCGGTTTGAAGAAACTGGCTCGACGGTTG
GTCAGAGAATGTTCAGGTGCGCAGCTATATTCCCGGACAAAGTAGAATGA

Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+

>Gcaud1708.t1 ID=Gcaud1708.t1|Name=Gcaud1708.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1950bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:5293..7242+ (Gracilaria caudata M_176_S67 male)
ATGCAATCAAAGGGATCCGAAGATAAAGCCAAATTGGCCGCCTCATCTTC
AGAGCCCCCAATCGACAATGATGACGATGTCAACAATATCGATATTGAAC
ACCTGGCCGAACTGCTCTCCCCGCTCCCTCTCGATGTTCTGCACAGAGAG
CGTTCGTATCAGAGTGGTCAAGTGTCAACTTACATTCAGGGCTTTGAGTC
CTTCCAACGCTTTTGTGTTGAGAACCAGGACACGCTCACACAGGCATCGC
AAAAGTTTGCAGGCATCAGCAATCCTGCAGAACGCACTCTCAATCTCGAC
ATTTGCTATGCCGCCAAGCAGGACCACGATATTGTCATCCTGGAAGACAA
AAATGGAATCAAGGTGCAAATGCCTGCGGACGAGACGAAGGCGCCGCTCG
TACAGCATATTGCATCACCGCAAGTCGATTTGCTCGTGTCGTTCCGCGTG
CGGGCGTATAGTGGACGGAAGGTGATAGGGCTTCCTCTCGTTATCACGGA
GGATGATTTGGTGCAAACGACCTCAGGGTTGCTCAACTCAACGCTGATGC
TCTCTGCACGCTGTGACTGCGGCGTCATTCGTCCTGGCATGCCAATCATC
GAGCCAGAAAACGCCGTATCAGCGGCGTTCTTCTTTCGCGTCGCTTATGC
GGTTGCACCCCTGCTGCCATGCGGCTGCGATACAGATCGACGACTTTCTG
ATTCGGAGGAGGATGAAAATTGGTATGCGGCGTTGTGTACTATACTTTTG
TACGTCGTAGACTTGTACTTGACGCTGCCAAGAACGGTGGGCTTCCTTAA
TGCCCGTTACGAAGACATTCATGTGCAGTTTGAAGACATGAGACTTAAGT
GCAACGTAGAGAACGCAAGTGTATCTTCCATGCGTGCGGCTGCGTTGCTG
CTCACAAAAGTGTGCAACATATACGCAGACGTTGAAGATTTCGATGATGA
TAACTCTTCAGATAGCTCTGCGGCAGAACAACGAATCTTAACCACTCGGG
AAGAGATAATCGAACGTGCTGTTCACCTAACGTGTATTGATGGATCTCGT
ATGGCAATTGCCTGGCTGTGCTACAACAAACTTTCCAACGGAAGCCCAGA
AGACATAATAATCGGCGCGCAGAACGCTGAGCTTCGGCATGCCCTTCTGT
ACATGGACTACAAAGAAGTTGAGACCTTGTGCGGGAAAACGAAACTAGAA
CTCGAGCCTGCATGCATGCCTGTCGTCCATGAGATTGTCACAAAAATGCA
ATCGATACTTCACGCTGCAGGTAGCGCGGAAGGTGTAGCAATGATTCAAG
AACCGAGGTTTCTCAAGCGACTGGGTATTCGGTGTATTCCCCGCCAGCGT
TTGGAGTCGATCCGATTCCATAGTGAGAATGAGATCTCACATGAATACAA
AGGTTCTATGCGCACTATCGCAGTAACGAAAGAAGGCGCCGTGATTGCGT
TCCGAAAACGCAAAAGATTCATCCGCAAGTTGCTGCAAGGCGTGAACTCT
TTGAGTGTGCTTGGAAACGGGATTTCATGGGACTTCTCATCGCTACTGGA
TGATAGTTTTCCTGGAGATAGTGAGACCGTGAACGATGCTTTACAATGGA
AGTTTGGACCAGAAGTGTTCCATTTCGTGTTGAGCAAAATCATGACGGGG
CACATCCACGTATGTAGCAAGTCGCCGGCGGCGAGTTTCGCGCCGAGCTC
TTCAAAGCGCGATGTTGGAGTGTTGATTTGGTCTCTTCTTGACAATCGCC
TCTGGAGAGAGCAAACATTTATTATTAGCAAGCACAAGAACAAAAAGAGG
TTGGAATTGTACTGGCTTTCTGCCGAAGGAATGAACTACTTTAGGGTTCA
CAGGAAAGTTGACGGACTTTATCGGTTTGAAGAAACTGGCTCGACGGTTG
GTCAGAGAATGTTCAGGTGCGCAGCTATATTCCCGGACAAAGTAGAATGA