Gcaud1707.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1707.t1
Unique NameGcaud1707.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length250
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_3969_length_2728_cov_4.393629contigNODE_3969_length_2728_cov_4.393629:1268..2017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1707Gcaud1707Gracilaria caudata M_176_S67 malegeneNODE_3969_length_2728_cov_4.393629 578..2728 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1707.t1.start1Gcaud1707.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_3969_length_2728_cov_4.393629 1268..1270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1707.t1.CDS1Gcaud1707.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_3969_length_2728_cov_4.393629 1268..2017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1707.t1.exon1Gcaud1707.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_3969_length_2728_cov_4.393629 1268..2017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1707.t1Gcaud1707.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_3969_length_2728_cov_4.393629 1268..2017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1707.t1 ID=Gcaud1707.t1|Name=Gcaud1707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MEVILVSSQSSTYLLPTYADSFGYPAERSSEPGDAVMRAPLPVKEDFRVK
YLILEMAVQYLPRDRDVLNSLAKLLSKGAFGVRRDAVRAKALYERALHED
ERALMSGRIIVSDRTTIEGGHIDAMYNLANLLAAGAPGVPQDAPSAVKLY
ERAIKVGGHPGAMSKLASLLTNGAPGVAVNASRAAELYRRAIEEGGRADA
MYYLANLLTVGAAGVNVNFERAAQYLELSVLQYGNTDAMVALAWLMSSRS
back to top

spliced messenger RNA

>Gcaud1707.t1 ID=Gcaud1707.t1|Name=Gcaud1707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:1268..2017+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTATCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCAC
ATATGCAGATTCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAG
ATGCAGTAATGAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAG
TACTTGATTCTTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGT
TTTGAATTCATTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTA
GAGATGCTGTGCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGAC
GAAAGAGCACTTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAT
TGAGGGTGGACACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAG
CAGGAGCCCCAGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTAT
GAACGTGCCATAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGC
CAGTCTGCTGACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAG
CTGCAGAGCTTTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCC
ATGTACTACCTAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGT
GAACTTTGAACGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACG
GTAACACGGATGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG
back to top

protein sequence of Gcaud1707.t1

>Gcaud1707.t1 ID=Gcaud1707.t1|Name=Gcaud1707.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MEVILVSSQSSTYLLPTYADSFGYPAERSSEPGDAVMRAPLPVKEDFRVK
YLILEMAVQYLPRDRDVLNSLAKLLSKGAFGVRRDAVRAKALYERALHED
ERALMSGRIIVSDRTTIEGGHIDAMYNLANLLAAGAPGVPQDAPSAVKLY
ERAIKVGGHPGAMSKLASLLTNGAPGVAVNASRAAELYRRAIEEGGRADA
MYYLANLLTVGAAGVNVNFERAAQYLELSVLQYGNTDAMVALAWLMSSRS
back to top

mRNA from alignment at NODE_3969_length_2728_cov_4.393629:1268..2017+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1707.t1 ID=Gcaud1707.t1|Name=Gcaud1707.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:1268..2017+ (Gracilaria caudata M_176_S67 male)
ATGGAAGTTATCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCAC
ATATGCAGATTCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAG
ATGCAGTAATGAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAG
TACTTGATTCTTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGT
TTTGAATTCATTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTA
GAGATGCTGTGCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGAC
GAAAGAGCACTTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAT
TGAGGGTGGACACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAG
CAGGAGCCCCAGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTAT
GAACGTGCCATAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGC
CAGTCTGCTGACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAG
CTGCAGAGCTTTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCC
ATGTACTACCTAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGT
GAACTTTGAACGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACG
GTAACACGGATGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG
back to top

Coding sequence (CDS) from alignment at NODE_3969_length_2728_cov_4.393629:1268..2017+

>Gcaud1707.t1 ID=Gcaud1707.t1|Name=Gcaud1707.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_3969_length_2728_cov_4.393629:1268..2017+ (Gracilaria caudata M_176_S67 male)
ATGGAAGTTATCCTAGTGTCATCTCAATCTAGCACCTATTTGCTGCCCAC
ATATGCAGATTCTTTCGGATATCCCGCTGAAAGGAGTTCCGAGCCCGGAG
ATGCAGTAATGAGAGCGCCGCTGCCCGTCAAAGAGGACTTCCGAGTCAAG
TACTTGATTCTTGAAATGGCCGTGCAGTACCTACCGAGGGATAGAGACGT
TTTGAATTCATTGGCAAAACTTCTCTCTAAGGGGGCTTTTGGAGTTCGTA
GAGATGCTGTGCGAGCCAAGGCGCTTTACGAAAGAGCTCTTCACGAAGAC
GAAAGAGCACTTATGTCAGGAAGAATTATTGTGAGTGACAGGACTACCAT
TGAGGGTGGACACATCGATGCAATGTACAATTTGGCGAACTTGCTTGCAG
CAGGAGCCCCAGGAGTACCTCAAGATGCTCCAAGTGCGGTTAAGCTCTAT
GAACGTGCCATAAAAGTGGGCGGACATCCTGGAGCCATGTCCAAGTTAGC
CAGTCTGCTGACAAACGGAGCACCAGGGGTAGCCGTGAACGCGTCAAGAG
CTGCAGAGCTTTATCGGCGTGCTATAGAGGAAGGAGGCCGAGCGGACGCC
ATGTACTACCTAGCAAACTTATTAACGGTGGGCGCAGCTGGAGTGAATGT
GAACTTTGAACGAGCCGCGCAGTACTTGGAGCTTTCAGTGCTTCAATACG
GTAACACGGATGCGATGGTGGCACTCGCATGGCTGATGAGTTCTAGATCG
back to top