Gcaud1704.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1704.t1
Unique Name	Gcaud1704.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	419

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_852_length_17021_cov_7.154341	contig	NODE_852_length_17021_cov_7.154341:12471..13727 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	400682.PAC_15712061
PFAMs	DDE_Tnp_4
Max annot lvl	33208\|Metazoa
Evalue	3.69e-32
EggNOG OGs	KOG4585@1\|root,KOG4585@2759\|Eukaryota,38NKY@33154\|Opisthokonta,3BK0T@33208\|Metazoa
Description	DDE superfamily endonuclease
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1704	Gcaud1704	Gracilaria caudata M_176_S67 male	gene	NODE_852_length_17021_cov_7.154341 12471..13727 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1704.t1.stop1	Gcaud1704.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_852_length_17021_cov_7.154341 12471..12473 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1704.t1.CDS1	Gcaud1704.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_852_length_17021_cov_7.154341 12471..13727 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1704.t1.exon1	Gcaud1704.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_852_length_17021_cov_7.154341 12471..13727 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1704.t1.start1	Gcaud1704.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_852_length_17021_cov_7.154341 13725..13727 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1704.t1	Gcaud1704.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_852_length_17021_cov_7.154341 12471..13727 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_852_length_17021_cov_7.154341:12471..13727-
coding sequence from alignment at NODE_852_length_17021_cov_7.154341:12471..13727-

mRNA sequence

>Gcaud1704.t1 ID=Gcaud1704.t1|Name=Gcaud1704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=419bp
MHPIIHAACQSEHSRAVIRNVCIRRIRTNGKKASTKSYKPPSETRKNVTF
ESITDFLSESTFRRDYRMSRKSFYKLCDLLRPYLSKNDEMGRRAGRPILS
VTMRLGITLSRLAGGTVDTIHQLFRTQRSTVYYVFLETCMALSKVLKLPG
IPDKFDDLCKLSRGFKTSRAKISPLTGCIGAIDGITIKIKPPRRNAAKNW
CRKGYYAIPVQAVVDYAGRFLFASAKCVGSTHDSLAYAASKLSEFLGGQN
FPIQFWLVGDEAYVCTNNLITPIPSSQIQYWYEKSFNYFLSSMRVHVEQA
FGRLVARWRILQSRLNYSVSNNASIIVLCMKLQNYCIDEGEKKVRAFTLQ
EEQDMEKDIRDWYRASKEGFTMMAVPDEGCESSVVVPKSTEKRSHMVEIM
RLRNLHRPVVMGVAEPLL*

spliced messenger RNA

>Gcaud1704.t1 ID=Gcaud1704.t1|Name=Gcaud1704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:12471..13727- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCCATTATTCATGCCGCTTGCCAATCCGAACACTCCCGAGCCGT
CATCCGCAATGTATGTATTCGTCGAATTCGGACAAATGGTAAGAAGGCGT
CTACCAAGTCATACAAACCCCCCTCCGAGACCCGAAAAAATGTAACTTTT
GAGTCAATCACTGACTTCTTAAGCGAATCAACTTTCAGGAGAGACTATCG
AATGTCCCGAAAGTCGTTCTACAAACTTTGCGATCTCCTTCGTCCGTATC
TCTCCAAAAACGACGAAATGGGAAGAAGGGCAGGACGTCCAATACTTTCA
GTGACAATGCGTTTAGGAATTACTTTGAGTCGTTTAGCAGGGGGCACTGT
GGACACAATCCATCAACTTTTTCGAACGCAACGATCGACAGTTTATTACG
TCTTCCTTGAAACATGTATGGCTCTCTCAAAAGTTCTGAAACTTCCGGGA
ATACCAGACAAGTTCGATGACTTATGCAAATTGTCCAGGGGTTTTAAAAC
ATCCCGTGCAAAGATCAGTCCGCTAACTGGATGTATTGGAGCTATTGATG
GGATTACAATCAAGATCAAGCCACCAAGACGCAATGCGGCCAAGAATTGG
TGTAGGAAAGGCTACTACGCTATTCCCGTGCAAGCTGTTGTCGATTATGC
TGGTCGGTTTTTGTTTGCTTCGGCAAAATGCGTGGGCTCAACCCATGACT
CCTTGGCATATGCGGCATCAAAGCTGTCAGAATTTTTGGGTGGTCAGAAC
TTCCCAATTCAGTTTTGGCTGGTAGGTGACGAGGCATATGTTTGCACGAA
CAATTTGATCACTCCCATACCCTCTTCACAAATACAGTACTGGTATGAGA
AATCTTTCAACTACTTTCTCAGTTCAATGAGAGTTCACGTGGAACAGGCA
TTCGGGCGGCTGGTTGCGAGATGGAGAATATTGCAGAGTCGTTTGAATTA
TTCTGTCAGCAACAACGCGAGTATTATTGTCTTATGCATGAAGTTGCAAA
ACTATTGCATTGATGAGGGCGAAAAGAAAGTTCGGGCTTTCACTTTACAG
GAAGAGCAGGACATGGAGAAAGATATTCGAGATTGGTATCGTGCGTCCAA
GGAAGGTTTTACTATGATGGCCGTTCCCGACGAAGGCTGTGAATCTAGCG
TTGTTGTGCCGAAGTCGACCGAGAAACGCAGTCACATGGTCGAGATTATG
CGTCTTCGCAATCTGCATCGCCCTGTCGTGATGGGAGTAGCCGAGCCGCT
TCTTTAA

protein sequence of Gcaud1704.t1

>Gcaud1704.t1 ID=Gcaud1704.t1|Name=Gcaud1704.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=419bp
MHPIIHAACQSEHSRAVIRNVCIRRIRTNGKKASTKSYKPPSETRKNVTF
ESITDFLSESTFRRDYRMSRKSFYKLCDLLRPYLSKNDEMGRRAGRPILS
VTMRLGITLSRLAGGTVDTIHQLFRTQRSTVYYVFLETCMALSKVLKLPG
IPDKFDDLCKLSRGFKTSRAKISPLTGCIGAIDGITIKIKPPRRNAAKNW
CRKGYYAIPVQAVVDYAGRFLFASAKCVGSTHDSLAYAASKLSEFLGGQN
FPIQFWLVGDEAYVCTNNLITPIPSSQIQYWYEKSFNYFLSSMRVHVEQA
FGRLVARWRILQSRLNYSVSNNASIIVLCMKLQNYCIDEGEKKVRAFTLQ
EEQDMEKDIRDWYRASKEGFTMMAVPDEGCESSVVVPKSTEKRSHMVEIM
RLRNLHRPVVMGVAEPLL*

mRNA from alignment at NODE_852_length_17021_cov_7.154341:12471..13727-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1704.t1 ID=Gcaud1704.t1|Name=Gcaud1704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1257bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:12471..13727- (Gracilaria caudata M_176_S67 male)
ATGCATCCCATTATTCATGCCGCTTGCCAATCCGAACACTCCCGAGCCGT
CATCCGCAATGTATGTATTCGTCGAATTCGGACAAATGGTAAGAAGGCGT
CTACCAAGTCATACAAACCCCCCTCCGAGACCCGAAAAAATGTAACTTTT
GAGTCAATCACTGACTTCTTAAGCGAATCAACTTTCAGGAGAGACTATCG
AATGTCCCGAAAGTCGTTCTACAAACTTTGCGATCTCCTTCGTCCGTATC
TCTCCAAAAACGACGAAATGGGAAGAAGGGCAGGACGTCCAATACTTTCA
GTGACAATGCGTTTAGGAATTACTTTGAGTCGTTTAGCAGGGGGCACTGT
GGACACAATCCATCAACTTTTTCGAACGCAACGATCGACAGTTTATTACG
TCTTCCTTGAAACATGTATGGCTCTCTCAAAAGTTCTGAAACTTCCGGGA
ATACCAGACAAGTTCGATGACTTATGCAAATTGTCCAGGGGTTTTAAAAC
ATCCCGTGCAAAGATCAGTCCGCTAACTGGATGTATTGGAGCTATTGATG
GGATTACAATCAAGATCAAGCCACCAAGACGCAATGCGGCCAAGAATTGG
TGTAGGAAAGGCTACTACGCTATTCCCGTGCAAGCTGTTGTCGATTATGC
TGGTCGGTTTTTGTTTGCTTCGGCAAAATGCGTGGGCTCAACCCATGACT
CCTTGGCATATGCGGCATCAAAGCTGTCAGAATTTTTGGGTGGTCAGAAC
TTCCCAATTCAGTTTTGGCTGGTAGGTGACGAGGCATATGTTTGCACGAA
CAATTTGATCACTCCCATACCCTCTTCACAAATACAGTACTGGTATGAGA
AATCTTTCAACTACTTTCTCAGTTCAATGAGAGTTCACGTGGAACAGGCA
TTCGGGCGGCTGGTTGCGAGATGGAGAATATTGCAGAGTCGTTTGAATTA
TTCTGTCAGCAACAACGCGAGTATTATTGTCTTATGCATGAAGTTGCAAA
ACTATTGCATTGATGAGGGCGAAAAGAAAGTTCGGGCTTTCACTTTACAG
GAAGAGCAGGACATGGAGAAAGATATTCGAGATTGGTATCGTGCGTCCAA
GGAAGGTTTTACTATGATGGCCGTTCCCGACGAAGGCTGTGAATCTAGCG
TTGTTGTGCCGAAGTCGACCGAGAAACGCAGTCACATGGTCGAGATTATG
CGTCTTCGCAATCTGCATCGCCCTGTCGTGATGGGAGTAGCCGAGCCGCT
TCTTTAA

Coding sequence (CDS) from alignment at NODE_852_length_17021_cov_7.154341:12471..13727-

>Gcaud1704.t1 ID=Gcaud1704.t1|Name=Gcaud1704.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1257bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:12471..13727- (Gracilaria caudata M_176_S67 male)
ATGCATCCCATTATTCATGCCGCTTGCCAATCCGAACACTCCCGAGCCGT
CATCCGCAATGTATGTATTCGTCGAATTCGGACAAATGGTAAGAAGGCGT
CTACCAAGTCATACAAACCCCCCTCCGAGACCCGAAAAAATGTAACTTTT
GAGTCAATCACTGACTTCTTAAGCGAATCAACTTTCAGGAGAGACTATCG
AATGTCCCGAAAGTCGTTCTACAAACTTTGCGATCTCCTTCGTCCGTATC
TCTCCAAAAACGACGAAATGGGAAGAAGGGCAGGACGTCCAATACTTTCA
GTGACAATGCGTTTAGGAATTACTTTGAGTCGTTTAGCAGGGGGCACTGT
GGACACAATCCATCAACTTTTTCGAACGCAACGATCGACAGTTTATTACG
TCTTCCTTGAAACATGTATGGCTCTCTCAAAAGTTCTGAAACTTCCGGGA
ATACCAGACAAGTTCGATGACTTATGCAAATTGTCCAGGGGTTTTAAAAC
ATCCCGTGCAAAGATCAGTCCGCTAACTGGATGTATTGGAGCTATTGATG
GGATTACAATCAAGATCAAGCCACCAAGACGCAATGCGGCCAAGAATTGG
TGTAGGAAAGGCTACTACGCTATTCCCGTGCAAGCTGTTGTCGATTATGC
TGGTCGGTTTTTGTTTGCTTCGGCAAAATGCGTGGGCTCAACCCATGACT
CCTTGGCATATGCGGCATCAAAGCTGTCAGAATTTTTGGGTGGTCAGAAC
TTCCCAATTCAGTTTTGGCTGGTAGGTGACGAGGCATATGTTTGCACGAA
CAATTTGATCACTCCCATACCCTCTTCACAAATACAGTACTGGTATGAGA
AATCTTTCAACTACTTTCTCAGTTCAATGAGAGTTCACGTGGAACAGGCA
TTCGGGCGGCTGGTTGCGAGATGGAGAATATTGCAGAGTCGTTTGAATTA
TTCTGTCAGCAACAACGCGAGTATTATTGTCTTATGCATGAAGTTGCAAA
ACTATTGCATTGATGAGGGCGAAAAGAAAGTTCGGGCTTTCACTTTACAG
GAAGAGCAGGACATGGAGAAAGATATTCGAGATTGGTATCGTGCGTCCAA
GGAAGGTTTTACTATGATGGCCGTTCCCGACGAAGGCTGTGAATCTAGCG
TTGTTGTGCCGAAGTCGACCGAGAAACGCAGTCACATGGTCGAGATTATG
CGTCTTCGCAATCTGCATCGCCCTGTCGTGATGGGAGTAGCCGAGCCGCT
TCTTTAA