Gcaud1701.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1701.t1
Unique NameGcaud1701.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_852_length_17021_cov_7.154341contigNODE_852_length_17021_cov_7.154341:10316..10789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1701Gcaud1701Gracilaria caudata M_176_S67 malegeneNODE_852_length_17021_cov_7.154341 10316..10789 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1701.t1.start1Gcaud1701.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_852_length_17021_cov_7.154341 10316..10318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1701.t1.CDS1Gcaud1701.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_852_length_17021_cov_7.154341 10316..10789 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1701.t1.exon1Gcaud1701.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_852_length_17021_cov_7.154341 10316..10789 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1701.t1.stop1Gcaud1701.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_852_length_17021_cov_7.154341 10787..10789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1701.t1Gcaud1701.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_852_length_17021_cov_7.154341 10316..10789 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1701.t1 ID=Gcaud1701.t1|Name=Gcaud1701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=158bp
MDIEHDAVFNALIDMAQIEKMVLSTEEDVKKLAWKRIPNVHTVWNKLADR
AYIRNGSNTFRHAPDGVCSRYLTKDVEPYLAALEEEVRLAGEEKQRSEDV
LADRSNELRGLLSTLEATVRELKKRKIELRNIQRKKNLIEDQLNHAEHAF
NPEPFER*
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spliced messenger RNA

>Gcaud1701.t1 ID=Gcaud1701.t1|Name=Gcaud1701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:10316..10789+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCGAACATGACGCCGTCTTTAACGCCTTGATCGACATGGCTCA
AATTGAGAAAATGGTGCTCAGCACGGAGGAGGACGTGAAAAAGCTGGCCT
GGAAAAGGATTCCGAATGTACACACGGTGTGGAACAAACTTGCAGACAGA
GCCTACATACGAAATGGATCGAATACATTTCGACATGCTCCTGATGGTGT
TTGTTCTCGGTATCTAACGAAAGACGTGGAACCGTATTTGGCGGCATTGG
AAGAAGAAGTAAGGCTTGCTGGTGAAGAGAAACAAAGAAGTGAAGATGTG
TTGGCGGACCGTTCTAATGAGTTGCGTGGCCTTTTGAGCACATTGGAGGC
AACTGTGCGAGAGCTGAAAAAAAGGAAGATTGAATTGAGAAACATACAAC
GAAAAAAGAACCTCATTGAAGATCAGTTGAACCACGCGGAACACGCCTTC
AATCCGGAACCATTCGAACGGTAA
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protein sequence of Gcaud1701.t1

>Gcaud1701.t1 ID=Gcaud1701.t1|Name=Gcaud1701.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MDIEHDAVFNALIDMAQIEKMVLSTEEDVKKLAWKRIPNVHTVWNKLADR
AYIRNGSNTFRHAPDGVCSRYLTKDVEPYLAALEEEVRLAGEEKQRSEDV
LADRSNELRGLLSTLEATVRELKKRKIELRNIQRKKNLIEDQLNHAEHAF
NPEPFER*
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mRNA from alignment at NODE_852_length_17021_cov_7.154341:10316..10789+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1701.t1 ID=Gcaud1701.t1|Name=Gcaud1701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:10316..10789+ (Gracilaria caudata M_176_S67 male)
ATGGACATCGAACATGACGCCGTCTTTAACGCCTTGATCGACATGGCTCA
AATTGAGAAAATGGTGCTCAGCACGGAGGAGGACGTGAAAAAGCTGGCCT
GGAAAAGGATTCCGAATGTACACACGGTGTGGAACAAACTTGCAGACAGA
GCCTACATACGAAATGGATCGAATACATTTCGACATGCTCCTGATGGTGT
TTGTTCTCGGTATCTAACGAAAGACGTGGAACCGTATTTGGCGGCATTGG
AAGAAGAAGTAAGGCTTGCTGGTGAAGAGAAACAAAGAAGTGAAGATGTG
TTGGCGGACCGTTCTAATGAGTTGCGTGGCCTTTTGAGCACATTGGAGGC
AACTGTGCGAGAGCTGAAAAAAAGGAAGATTGAATTGAGAAACATACAAC
GAAAAAAGAACCTCATTGAAGATCAGTTGAACCACGCGGAACACGCCTTC
AATCCGGAACCATTCGAACGGTAA
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Coding sequence (CDS) from alignment at NODE_852_length_17021_cov_7.154341:10316..10789+

>Gcaud1701.t1 ID=Gcaud1701.t1|Name=Gcaud1701.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=474bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:10316..10789+ (Gracilaria caudata M_176_S67 male)
ATGGACATCGAACATGACGCCGTCTTTAACGCCTTGATCGACATGGCTCA
AATTGAGAAAATGGTGCTCAGCACGGAGGAGGACGTGAAAAAGCTGGCCT
GGAAAAGGATTCCGAATGTACACACGGTGTGGAACAAACTTGCAGACAGA
GCCTACATACGAAATGGATCGAATACATTTCGACATGCTCCTGATGGTGT
TTGTTCTCGGTATCTAACGAAAGACGTGGAACCGTATTTGGCGGCATTGG
AAGAAGAAGTAAGGCTTGCTGGTGAAGAGAAACAAAGAAGTGAAGATGTG
TTGGCGGACCGTTCTAATGAGTTGCGTGGCCTTTTGAGCACATTGGAGGC
AACTGTGCGAGAGCTGAAAAAAAGGAAGATTGAATTGAGAAACATACAAC
GAAAAAAGAACCTCATTGAAGATCAGTTGAACCACGCGGAACACGCCTTC
AATCCGGAACCATTCGAACGGTAA
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