Gcaud1699.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1699.t1
Unique Name	Gcaud1699.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_852_length_17021_cov_7.154341	contig	NODE_852_length_17021_cov_7.154341:4486..5865 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1699	Gcaud1699	Gracilaria caudata M_176_S67 male	gene	NODE_852_length_17021_cov_7.154341 4486..5865 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1	Gcaud1699.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_852_length_17021_cov_7.154341 4486..5865 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1.start1	Gcaud1699.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_852_length_17021_cov_7.154341 4486..4488 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1.CDS1	Gcaud1699.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_852_length_17021_cov_7.154341 4486..4889 +
Gcaud1699.t1.CDS2	Gcaud1699.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_852_length_17021_cov_7.154341 5247..5865 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1.exon1	Gcaud1699.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_852_length_17021_cov_7.154341 4486..4889 +
Gcaud1699.t1.exon2	Gcaud1699.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_852_length_17021_cov_7.154341 5247..5865 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1.intron1	Gcaud1699.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_852_length_17021_cov_7.154341 4890..5246 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1699.t1.stop1	Gcaud1699.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_852_length_17021_cov_7.154341 5863..5865 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+
coding sequence from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+

mRNA sequence

>Gcaud1699.t1 ID=Gcaud1699.t1|Name=Gcaud1699.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MPSSSDITVCPYSKPPFREDRMQYIYSFLLRKTVPELRKICKPFNLKVHN
RRQDELVAQIVLFFHVKSLDDVSIRDCISLNEELKSFFPWEKQAIDSRSS
LTPLPDVGDFLSMVREKDRRVYEKQIVSYKFQSEESRWAVSGQNDPGNIS
SFLRRTPGGSDLTADSKRAYIFFIVARTGTPNEAEHLFITASKLIEEDEG
GVEEGCLGGKEHSEAFSSRRRSGSGARNSGSHRDNELSKEVSESNQISRE
QTAIMRAHLELAQKKAEGPVKSSEEVELNGCENRMKLVAYLADSSAQLKR
VRDLHDREVVEVLQDNHTLLLKKFKRMVEKEKTRDFDEEP*

spliced messenger RNA

>Gcaud1699.t1 ID=Gcaud1699.t1|Name=Gcaud1699.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCGTCGTCTGATATTACGGTTTGCCCGTATAGTAAGCCACCATT
TAGAGAGGATCGCATGCAGTACATTTATTCTTTTCTTCTCAGAAAAACGG
TGCCAGAACTGAGAAAAATCTGTAAGCCATTCAACCTTAAGGTTCACAAT
CGAAGACAAGACGAACTAGTAGCGCAGATAGTGCTCTTCTTTCATGTAAA
GAGCTTGGACGACGTGAGCATAAGGGACTGCATATCATTAAATGAGGAAT
TGAAGTCCTTCTTTCCGTGGGAGAAGCAAGCCATAGACAGCCGTTCCAGC
CTTACTCCACTGCCTGATGTGGGAGATTTTCTCAGCATGGTGAGGGAAAA
GGATCGAAGGGTGTACGAGAAGCAAATTGTGTCTTACAAATTTCAGAGCG
AGGAATCAAGATGGGCGGTATCTGGTCAAAATGACCCAGGAAACATCTCT
AGCTTTCTGCGAAGAACCCCTGGTGGGTCTGATTTGACGGCCGATTCTAA
ACGCGCATATATTTTCTTCATCGTAGCAAGAACCGGTACACCAAATGAAG
CCGAGCATTTGTTTATTACGGCGTCGAAGCTCATTGAAGAGGACGAAGGT
GGTGTGGAGGAGGGTTGTTTGGGCGGTAAGGAACACAGCGAGGCTTTTAG
TAGCCGACGCAGAAGTGGATCTGGTGCGCGAAACAGTGGCAGCCACCGTG
ATAATGAGTTATCAAAGGAAGTTAGTGAGTCTAATCAAATTAGTCGTGAA
CAGACGGCTATTATGAGAGCGCATTTGGAACTTGCACAGAAGAAAGCTGA
GGGGCCAGTTAAGTCATCTGAGGAGGTGGAACTGAATGGGTGTGAAAATC
GTATGAAGCTTGTTGCATATCTGGCAGACAGCTCCGCACAGCTCAAGAGA
GTTCGGGATCTACATGACAGGGAGGTGGTAGAGGTGCTACAGGACAACCA
CACCCTGTTGCTGAAGAAGTTCAAGCGCATGGTCGAGAAGGAGAAGACCC
GAGACTTTGATGAAGAACCGTAA

protein sequence of Gcaud1699.t1

>Gcaud1699.t1 ID=Gcaud1699.t1|Name=Gcaud1699.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MPSSSDITVCPYSKPPFREDRMQYIYSFLLRKTVPELRKICKPFNLKVHN
RRQDELVAQIVLFFHVKSLDDVSIRDCISLNEELKSFFPWEKQAIDSRSS
LTPLPDVGDFLSMVREKDRRVYEKQIVSYKFQSEESRWAVSGQNDPGNIS
SFLRRTPGGSDLTADSKRAYIFFIVARTGTPNEAEHLFITASKLIEEDEG
GVEEGCLGGKEHSEAFSSRRRSGSGARNSGSHRDNELSKEVSESNQISRE
QTAIMRAHLELAQKKAEGPVKSSEEVELNGCENRMKLVAYLADSSAQLKR
VRDLHDREVVEVLQDNHTLLLKKFKRMVEKEKTRDFDEEP*

mRNA from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1699.t1 ID=Gcaud1699.t1|Name=Gcaud1699.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCGTCGTCTGATATTACGGTTTGCCCGTATAGTAAGCCACCATT
TAGAGAGGATCGCATGCAGTACATTTATTCTTTTCTTCTCAGAAAAACGG
TGCCAGAACTGAGAAAAATCTGTAAGCCATTCAACCTTAAGGTTCACAAT
CGAAGACAAGACGAACTAGTAGCGCAGATAGTGCTCTTCTTTCATGTAAA
GAGCTTGGACGACGTGAGCATAAGGGACTGCATATCATTAAATGAGGAAT
TGAAGTCCTTCTTTCCGTGGGAGAAGCAAGCCATAGACAGCCGTTCCAGC
CTTACTCCACTGCCTGATGTGGGAGATTTTCTCAGCATGGTGAGGGAAAA
GGATCGAAGGGTGTACGAGAAGCAAATTGTGTCTTACAAATTTCAGAGCG
AGGAGTCGGAGCAATTCCCTTTGACATTGGAGGAACCATCAGGGCAcaag
gatccagcctttactatgaacgaatttgcgaggctcatggtcattttgcg
agacgacgagcaagcacggattgcgttggaaaaggcagttggtgagacgt
tgaaaaaacctttgttagatcgcaagctcacccgtgaatcctactggttg
acaattgctagtcgctttaacaatcaggatgtagactcgaagaattgctt
cgctgctacaatgaacgaagtggattcaaacaagagacctctttgcaaga
gaagtgctgctgttctgaagaagcaatttGAGAGCGTTCGCTATACTGTG
ACAACGGCGAGATCAAGATGGGCGGTATCTGGTCAAAATGACCCAGGAAA
CATCTCTAGCTTTCTGCGAAGAACCCCTGGTGGGTCTGATTTGACGGCCG
ATTCTAAACGCGCATATATTTTCTTCATCGTAGCAAGAACCGGTACACCA
AATGAAGCCGAGCATTTGTTTATTACGGCGTCGAAGCTCATTGAAGAGGA
CGAAGGTGGTGTGGAGGAGGGTTGTTTGGGCGGTAAGGAACACAGCGAGG
CTTTTAGTAGCCGACGCAGAAGTGGATCTGGTGCGCGAAACAGTGGCAGC
CACCGTGATAATGAGTTATCAAAGGAAGTTAGTGAGTCTAATCAAATTAG
TCGTGAACAGACGGCTATTATGAGAGCGCATTTGGAACTTGCACAGAAGA
AAGCTGAGGGGCCAGTTAAGTCATCTGAGGAGGTGGAACTGAATGGGTGT
GAAAATCGTATGAAGCTTGTTGCATATCTGGCAGACAGCTCCGCACAGCT
CAAGAGAGTTCGGGATCTACATGACAGGGAGGTGGTAGAGGTGCTACAGG
ACAACCACACCCTGTTGCTGAAGAAGTTCAAGCGCATGGTCGAGAAGGAG
AAGACCCGAGACTTTGATGAAGAACCGTAA

Coding sequence (CDS) from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+

>Gcaud1699.t1 ID=Gcaud1699.t1|Name=Gcaud1699.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_852_length_17021_cov_7.154341:4486..5865+ (Gracilaria caudata M_176_S67 male)
ATGCCCTCGTCGTCTGATATTACGGTTTGCCCGTATAGTAAGCCACCATT
TAGAGAGGATCGCATGCAGTACATTTATTCTTTTCTTCTCAGAAAAACGG
TGCCAGAACTGAGAAAAATCTGTAAGCCATTCAACCTTAAGGTTCACAAT
CGAAGACAAGACGAACTAGTAGCGCAGATAGTGCTCTTCTTTCATGTAAA
GAGCTTGGACGACGTGAGCATAAGGGACTGCATATCATTAAATGAGGAAT
TGAAGTCCTTCTTTCCGTGGGAGAAGCAAGCCATAGACAGCCGTTCCAGC
CTTACTCCACTGCCTGATGTGGGAGATTTTCTCAGCATGGTGAGGGAAAA
GGATCGAAGGGTGTACGAGAAGCAAATTGTGTCTTACAAATTTCAGAGCG
AGGAATCAAGATGGGCGGTATCTGGTCAAAATGACCCAGGAAACATCTCT
AGCTTTCTGCGAAGAACCCCTGGTGGGTCTGATTTGACGGCCGATTCTAA
ACGCGCATATATTTTCTTCATCGTAGCAAGAACCGGTACACCAAATGAAG
CCGAGCATTTGTTTATTACGGCGTCGAAGCTCATTGAAGAGGACGAAGGT
GGTGTGGAGGAGGGTTGTTTGGGCGGTAAGGAACACAGCGAGGCTTTTAG
TAGCCGACGCAGAAGTGGATCTGGTGCGCGAAACAGTGGCAGCCACCGTG
ATAATGAGTTATCAAAGGAAGTTAGTGAGTCTAATCAAATTAGTCGTGAA
CAGACGGCTATTATGAGAGCGCATTTGGAACTTGCACAGAAGAAAGCTGA
GGGGCCAGTTAAGTCATCTGAGGAGGTGGAACTGAATGGGTGTGAAAATC
GTATGAAGCTTGTTGCATATCTGGCAGACAGCTCCGCACAGCTCAAGAGA
GTTCGGGATCTACATGACAGGGAGGTGGTAGAGGTGCTACAGGACAACCA
CACCCTGTTGCTGAAGAAGTTCAAGCGCATGGTCGAGAAGGAGAAGACCC
GAGACTTTGATGAAGAACCGTAA