Gcaud1697.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1697.t1
Unique Name	Gcaud1697.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_981_length_15546_cov_4.499191	contig	NODE_981_length_15546_cov_4.499191:3477..4550 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45351.EDO50079
PFAMs	7tm_2,Calx-beta,DUF316,GPS,IgGFc_binding
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08444
Evalue	1.2e-05
EggNOG OGs	KOG1216@1\|root,KOG1216@2759\|Eukaryota
Description	sensory perception of sound
COG category	S
BRITE	ko00000,ko04030

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1697	Gcaud1697	Gracilaria caudata M_176_S67 male	gene	NODE_981_length_15546_cov_4.499191 3477..4550 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1697.t1.stop1	Gcaud1697.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_981_length_15546_cov_4.499191 3477..3479 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1697.t1.CDS1	Gcaud1697.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_981_length_15546_cov_4.499191 3477..4550 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1697.t1.exon1	Gcaud1697.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_981_length_15546_cov_4.499191 3477..4550 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1697.t1.start1	Gcaud1697.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_981_length_15546_cov_4.499191 4548..4550 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1697.t1	Gcaud1697.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_981_length_15546_cov_4.499191 3477..4550 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_981_length_15546_cov_4.499191:3477..4550-
coding sequence from alignment at NODE_981_length_15546_cov_4.499191:3477..4550-

mRNA sequence

>Gcaud1697.t1 ID=Gcaud1697.t1|Name=Gcaud1697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=358bp
MGFRFLAFAALAALSAVGIHATAAPQQCLIQNVCYIIDQSASIDNAELER
EQDFVIRITSQMESESSVTPSNSAVAFSDSAQTIRSPTTVFSDFEDAVRQ
ERIFSGLTSISSGLNQCRNELDNVQGNKVMVLVTDGETNSADIEPSKQAA
ADAKAAGIDIVTVGIGHSVSADYLMGIASDPSLFIDVNFGNLDQKVPEVV
QAICDAPDPSECEKAFNECEFTFADRRGLEPPFSIGGEPDLAFTTRVVPK
DVSYALGALNTNNIVPEFIDENGVAKAITEFGSQRFTPTHFKPFWIAQER
GSGIGHQTFQGNQEEVAKDKCVRIFFTNYQEIRENRVVNRNNVPREANKC
VVFKTAA*

spliced messenger RNA

>Gcaud1697.t1 ID=Gcaud1697.t1|Name=Gcaud1697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:3477..4550- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCCGTTTCCTCGCCTTCGCTGCTCTTGCAGCCCTTTCCGCCGT
TGGAATCCACGCTACCGCGGCCCCCCAACAGTGTCTGATTCAAAATGTTT
GCTATATTATCGATCAGTCTGCATCAATTGACAACGCGGAACTTGAACGT
GAACAAGACTTTGTCATTAGAATCACGAGCCAAATGGAATCGGAATCATC
CGTCACTCCGTCGAACTCCGCCGTTGCTTTTTCTGACTCTGCCCAAACCA
TCCGCTCACCGACAACAGTTTTCAGTGATTTCGAGGACGCCGTCAGACAG
GAAAGGATCTTCAGTGGCTTGACTTCTATCTCCTCCGGATTGAATCAATG
CAGAAATGAGCTTGACAACGTTCAGGGCAACAAGGTCATGGTGCTAGTCA
CTGACGGTGAGACCAACTCTGCTGATATCGAACCTTCGAAGCAGGCCGCT
GCTGACGCGAAGGCTGCTGGAATTGATATTGTCACCGTTGGAATTGGACA
TAGCGTGAGCGCAGATTACTTGATGGGCATTGCAAGCGACCCCTCACTGT
TCATCGACGTCAACTTCGGTAACCTTGATCAGAAGGTACCCGAAGTTGTT
CAAGCCATATGTGATGCTCCGGATCCATCCGAATGTGAGAAGGCATTCAA
CGAATGTGAGTTCACGTTCGCCGACAGAAGAGGTTTGGAACCGCCGTTCT
CCATAGGTGGAGAGCCGGATCTGGCATTCACGACCAGAGTTGTTCCAAAG
GACGTTTCGTACGCTCTTGGTGCTTTGAATACCAACAACATTGTTCCAGA
GTTCATCGATGAGAATGGCGTTGCCAAGGCAATTACTGAATTTGGGTCGC
AGAGGTTTACTCCCACTCATTTCAAGCCTTTCTGGATCGCTCAGGAGCGT
GGATCTGGAATTGGCCATCAGACATTCCAGGGAAATCAGGAAGAAGTTGC
GAAGGACAAATGTGTTCGTATCTTCTTCACTAACTACCAGGAAATAAGGG
AGAACCGTGTTGTGAACCGCAATAACGTGCCTCGGGAGGCGAACAAATGC
GTAGTTTTCAAGACAGCTGCTTAG

protein sequence of Gcaud1697.t1

>Gcaud1697.t1 ID=Gcaud1697.t1|Name=Gcaud1697.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MGFRFLAFAALAALSAVGIHATAAPQQCLIQNVCYIIDQSASIDNAELER
EQDFVIRITSQMESESSVTPSNSAVAFSDSAQTIRSPTTVFSDFEDAVRQ
ERIFSGLTSISSGLNQCRNELDNVQGNKVMVLVTDGETNSADIEPSKQAA
ADAKAAGIDIVTVGIGHSVSADYLMGIASDPSLFIDVNFGNLDQKVPEVV
QAICDAPDPSECEKAFNECEFTFADRRGLEPPFSIGGEPDLAFTTRVVPK
DVSYALGALNTNNIVPEFIDENGVAKAITEFGSQRFTPTHFKPFWIAQER
GSGIGHQTFQGNQEEVAKDKCVRIFFTNYQEIRENRVVNRNNVPREANKC
VVFKTAA*

mRNA from alignment at NODE_981_length_15546_cov_4.499191:3477..4550-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1697.t1 ID=Gcaud1697.t1|Name=Gcaud1697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:3477..4550- (Gracilaria caudata M_176_S67 male)
ATGGGTTTCCGTTTCCTCGCCTTCGCTGCTCTTGCAGCCCTTTCCGCCGT
TGGAATCCACGCTACCGCGGCCCCCCAACAGTGTCTGATTCAAAATGTTT
GCTATATTATCGATCAGTCTGCATCAATTGACAACGCGGAACTTGAACGT
GAACAAGACTTTGTCATTAGAATCACGAGCCAAATGGAATCGGAATCATC
CGTCACTCCGTCGAACTCCGCCGTTGCTTTTTCTGACTCTGCCCAAACCA
TCCGCTCACCGACAACAGTTTTCAGTGATTTCGAGGACGCCGTCAGACAG
GAAAGGATCTTCAGTGGCTTGACTTCTATCTCCTCCGGATTGAATCAATG
CAGAAATGAGCTTGACAACGTTCAGGGCAACAAGGTCATGGTGCTAGTCA
CTGACGGTGAGACCAACTCTGCTGATATCGAACCTTCGAAGCAGGCCGCT
GCTGACGCGAAGGCTGCTGGAATTGATATTGTCACCGTTGGAATTGGACA
TAGCGTGAGCGCAGATTACTTGATGGGCATTGCAAGCGACCCCTCACTGT
TCATCGACGTCAACTTCGGTAACCTTGATCAGAAGGTACCCGAAGTTGTT
CAAGCCATATGTGATGCTCCGGATCCATCCGAATGTGAGAAGGCATTCAA
CGAATGTGAGTTCACGTTCGCCGACAGAAGAGGTTTGGAACCGCCGTTCT
CCATAGGTGGAGAGCCGGATCTGGCATTCACGACCAGAGTTGTTCCAAAG
GACGTTTCGTACGCTCTTGGTGCTTTGAATACCAACAACATTGTTCCAGA
GTTCATCGATGAGAATGGCGTTGCCAAGGCAATTACTGAATTTGGGTCGC
AGAGGTTTACTCCCACTCATTTCAAGCCTTTCTGGATCGCTCAGGAGCGT
GGATCTGGAATTGGCCATCAGACATTCCAGGGAAATCAGGAAGAAGTTGC
GAAGGACAAATGTGTTCGTATCTTCTTCACTAACTACCAGGAAATAAGGG
AGAACCGTGTTGTGAACCGCAATAACGTGCCTCGGGAGGCGAACAAATGC
GTAGTTTTCAAGACAGCTGCTTAG

Coding sequence (CDS) from alignment at NODE_981_length_15546_cov_4.499191:3477..4550-

>Gcaud1697.t1 ID=Gcaud1697.t1|Name=Gcaud1697.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1074bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:3477..4550- (Gracilaria caudata M_176_S67 male)
ATGGGTTTCCGTTTCCTCGCCTTCGCTGCTCTTGCAGCCCTTTCCGCCGT
TGGAATCCACGCTACCGCGGCCCCCCAACAGTGTCTGATTCAAAATGTTT
GCTATATTATCGATCAGTCTGCATCAATTGACAACGCGGAACTTGAACGT
GAACAAGACTTTGTCATTAGAATCACGAGCCAAATGGAATCGGAATCATC
CGTCACTCCGTCGAACTCCGCCGTTGCTTTTTCTGACTCTGCCCAAACCA
TCCGCTCACCGACAACAGTTTTCAGTGATTTCGAGGACGCCGTCAGACAG
GAAAGGATCTTCAGTGGCTTGACTTCTATCTCCTCCGGATTGAATCAATG
CAGAAATGAGCTTGACAACGTTCAGGGCAACAAGGTCATGGTGCTAGTCA
CTGACGGTGAGACCAACTCTGCTGATATCGAACCTTCGAAGCAGGCCGCT
GCTGACGCGAAGGCTGCTGGAATTGATATTGTCACCGTTGGAATTGGACA
TAGCGTGAGCGCAGATTACTTGATGGGCATTGCAAGCGACCCCTCACTGT
TCATCGACGTCAACTTCGGTAACCTTGATCAGAAGGTACCCGAAGTTGTT
CAAGCCATATGTGATGCTCCGGATCCATCCGAATGTGAGAAGGCATTCAA
CGAATGTGAGTTCACGTTCGCCGACAGAAGAGGTTTGGAACCGCCGTTCT
CCATAGGTGGAGAGCCGGATCTGGCATTCACGACCAGAGTTGTTCCAAAG
GACGTTTCGTACGCTCTTGGTGCTTTGAATACCAACAACATTGTTCCAGA
GTTCATCGATGAGAATGGCGTTGCCAAGGCAATTACTGAATTTGGGTCGC
AGAGGTTTACTCCCACTCATTTCAAGCCTTTCTGGATCGCTCAGGAGCGT
GGATCTGGAATTGGCCATCAGACATTCCAGGGAAATCAGGAAGAAGTTGC
GAAGGACAAATGTGTTCGTATCTTCTTCACTAACTACCAGGAAATAAGGG
AGAACCGTGTTGTGAACCGCAATAACGTGCCTCGGGAGGCGAACAAATGC
GTAGTTTTCAAGACAGCTGCTTAG