Gcaud1696.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1696.t1
Unique Name	Gcaud1696.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	446

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_981_length_15546_cov_4.499191	contig	NODE_981_length_15546_cov_4.499191:406..1799 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1696	Gcaud1696	Gracilaria caudata M_176_S67 male	gene	NODE_981_length_15546_cov_4.499191 406..1799 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1	Gcaud1696.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_981_length_15546_cov_4.499191 406..1799 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1.stop1	Gcaud1696.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_981_length_15546_cov_4.499191 406..408 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1.CDS1	Gcaud1696.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_981_length_15546_cov_4.499191 406..1353 -
Gcaud1696.t1.CDS2	Gcaud1696.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_981_length_15546_cov_4.499191 1410..1799 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1.exon1	Gcaud1696.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_981_length_15546_cov_4.499191 406..1353 -
Gcaud1696.t1.exon2	Gcaud1696.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_981_length_15546_cov_4.499191 1410..1799 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1.intron1	Gcaud1696.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_981_length_15546_cov_4.499191 1354..1409 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1696.t1.start1	Gcaud1696.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_981_length_15546_cov_4.499191 1797..1799 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_981_length_15546_cov_4.499191:406..1799-
coding sequence from alignment at NODE_981_length_15546_cov_4.499191:406..1799-

mRNA sequence

>Gcaud1696.t1 ID=Gcaud1696.t1|Name=Gcaud1696.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=446bp
MNTTDADYPRLHKKSATSCKLTNDAKLAISNHGAGELSIVWDTHQRKEVH
RFSNKDGIPFCMTLSGDGRRALRVFVDGVVELLDTSNWGVKHTHRFEHEL
LINVERVLGCHLDDHGSESVAVFVTDQHSLPEREDSGLFCFVFTAAVGVR
HYGRGSVPAEVWFLDLPSFFVIQYHPLHGLMAAVSVAEVGPLAVLADTSS
LCLVKWDKRGHESSLLPNYSASSEISCAISADGSRILATTRFGFGVWDAR
RKSFVAWFDSYKAYSGCGSLTPNGTTFVTGCGNGSVHLFRGTPTWFSCPH
QSVLLELTEKEIEMKETCTKYARQWHLENCSDGVVPLEKAIDGVEHILRK
LDLLPLTDDTVAEAVKYVTMSERSRSMEMNTEMFVDVFYRLLGNVVEASG
LDQFRKECTQLFHLHSGDGEDASLRFRPTAAWLIMDVYEKPGAYF*

spliced messenger RNA

>Gcaud1696.t1 ID=Gcaud1696.t1|Name=Gcaud1696.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1338bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:406..1799- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCACCGACGCGGACTATCCTAGGCTGCATAAGAAATCTGCTAC
AAGCTGCAAACTGACAAACGACGCCAAACTCGCTATAAGCAACCATGGCG
CTGGTGAGTTATCTATTGTCTGGGATACGCATCAACGCAAAGAAGTGCAC
CGCTTTTCAAACAAAGACGGCATACCATTTTGTATGACCCTTTCGGGCGA
TGGGCGCCGAGCGCTGAGAGTCTTCGTGGACGGAGTGGTAGAACTGCTAG
ATACTTCAAACTGGGGTGTGAAGCACACTCACCGCTTTGAACATGAGCTT
TTGATTAATGTGGAAAGAGTGCTCGGGTGCCATTTGGACGACCATGGTTC
TGAATCTGTGGCTGTTTTTGTAACTGACCAGCATTCGCTGCCTGAGAGGG
AAGATTCTGGATTATTCTGTTTCGTTTTCACAGCAGCTGTTGGCGTACGC
CACTACGGAAGGGGATCGGTACCAGCGGAGGTATGGTTTTTAGACTTGCC
TTCCTTCTTCGTGATTCAGTATCATCCTCTGCATGGCCTTATGGCGGCGG
TAAGTGTAGCTGAGGTAGGTCCCTTGGCAGTCTTAGCCGACACCAGCTCT
CTGTGTCTAGTTAAGTGGGATAAACGTGGTCACGAATCTTCTCTGCTGCC
GAATTACTCAGCAAGTTCAGAAATTTCGTGCGCCATAAGTGCTGACGGAT
CACGAATCTTAGCCACGACCCGCTTTGGATTCGGTGTTTGGGATGCGCGG
CGCAAGTCTTTTGTGGCATGGTTCGATTCCTACAAAGCGTATTCAGGATG
CGGCTCTCTAACACCAAACGGCACAACATTTGTCACTGGCTGTGGTAATG
GATCCGTACACCTTTTTCGTGGCACTCCGACATGGTTTTCTTGCCCTCAC
CAGTCGGTGCTACTTGAACTTACCGAAAAAGAAATAGAGATGAAGGAGAC
TTGTACGAAGTATGCACGCCAATGGCATTTGGAGAACTGCAGCGATGGAG
TGGTTCCGCTGGAAAAGGCAATAGACGGCGTGGAACATATACTTCGAAAA
CTAGATTTACTACCGCTGACTGACGATACTGTGGCGGAAGCGGTCAAATA
CGTGACTATGAGTGAGAGAAGTCGGAGCATGGAAATGAATACAGAAATGT
TTGTGGACGTATTCTATAGGTTGCTGGGCAATGTAGTTGAAGCTTCAGGC
CTAGATCAGTTTCGGAAGGAGTGTACACAACTGTTCCATCTTCATTCGGG
AGATGGTGAAGACGCATCATTGCGTTTTCGTCCTACTGCAGCATGGTTGA
TCATGGATGTATACGAAAAACCAGGGGCGTATTTCTGA

protein sequence of Gcaud1696.t1

>Gcaud1696.t1 ID=Gcaud1696.t1|Name=Gcaud1696.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=446bp
MNTTDADYPRLHKKSATSCKLTNDAKLAISNHGAGELSIVWDTHQRKEVH
RFSNKDGIPFCMTLSGDGRRALRVFVDGVVELLDTSNWGVKHTHRFEHEL
LINVERVLGCHLDDHGSESVAVFVTDQHSLPEREDSGLFCFVFTAAVGVR
HYGRGSVPAEVWFLDLPSFFVIQYHPLHGLMAAVSVAEVGPLAVLADTSS
LCLVKWDKRGHESSLLPNYSASSEISCAISADGSRILATTRFGFGVWDAR
RKSFVAWFDSYKAYSGCGSLTPNGTTFVTGCGNGSVHLFRGTPTWFSCPH
QSVLLELTEKEIEMKETCTKYARQWHLENCSDGVVPLEKAIDGVEHILRK
LDLLPLTDDTVAEAVKYVTMSERSRSMEMNTEMFVDVFYRLLGNVVEASG
LDQFRKECTQLFHLHSGDGEDASLRFRPTAAWLIMDVYEKPGAYF*

mRNA from alignment at NODE_981_length_15546_cov_4.499191:406..1799-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1696.t1 ID=Gcaud1696.t1|Name=Gcaud1696.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1394bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:406..1799- (Gracilaria caudata M_176_S67 male)
ATGAACACCACCGACGCGGACTATCCTAGGCTGCATAAGAAATCTGCTAC
AAGCTGCAAACTGACAAACGACGCCAAACTCGCTATAAGCAACCATGGCG
CTGGTGAGTTATCTATTGTCTGGGATACGCATCAACGCAAAGAAGTGCAC
CGCTTTTCAAACAAAGACGGCATACCATTTTGTATGACCCTTTCGGGCGA
TGGGCGCCGAGCGCTGAGAGTCTTCGTGGACGGAGTGGTAGAACTGCTAG
ATACTTCAAACTGGGGTGTGAAGCACACTCACCGCTTTGAACATGAGCTT
TTGATTAATGTGGAAAGAGTGCTCGGGTGCCATTTGGACGACCATGGTTC
TGAATCTGTGGCTGTTTTTGTAACTGACCAGCATTCGCTGGTGCTTTTGA
AGCAATGGTCACACCCATCTTGCCCTGATTCTTGGAAGTGCTACAGCCTG
AGAGGGAAGATTCTGGATTATTCTGTTTCGTTTTCACAGCAGCTGTTGGC
GTACGCCACTACGGAAGGGGATCGGTACCAGCGGAGGTATGGTTTTTAGA
CTTGCCTTCCTTCTTCGTGATTCAGTATCATCCTCTGCATGGCCTTATGG
CGGCGGTAAGTGTAGCTGAGGTAGGTCCCTTGGCAGTCTTAGCCGACACC
AGCTCTCTGTGTCTAGTTAAGTGGGATAAACGTGGTCACGAATCTTCTCT
GCTGCCGAATTACTCAGCAAGTTCAGAAATTTCGTGCGCCATAAGTGCTG
ACGGATCACGAATCTTAGCCACGACCCGCTTTGGATTCGGTGTTTGGGAT
GCGCGGCGCAAGTCTTTTGTGGCATGGTTCGATTCCTACAAAGCGTATTC
AGGATGCGGCTCTCTAACACCAAACGGCACAACATTTGTCACTGGCTGTG
GTAATGGATCCGTACACCTTTTTCGTGGCACTCCGACATGGTTTTCTTGC
CCTCACCAGTCGGTGCTACTTGAACTTACCGAAAAAGAAATAGAGATGAA
GGAGACTTGTACGAAGTATGCACGCCAATGGCATTTGGAGAACTGCAGCG
ATGGAGTGGTTCCGCTGGAAAAGGCAATAGACGGCGTGGAACATATACTT
CGAAAACTAGATTTACTACCGCTGACTGACGATACTGTGGCGGAAGCGGT
CAAATACGTGACTATGAGTGAGAGAAGTCGGAGCATGGAAATGAATACAG
AAATGTTTGTGGACGTATTCTATAGGTTGCTGGGCAATGTAGTTGAAGCT
TCAGGCCTAGATCAGTTTCGGAAGGAGTGTACACAACTGTTCCATCTTCA
TTCGGGAGATGGTGAAGACGCATCATTGCGTTTTCGTCCTACTGCAGCAT
GGTTGATCATGGATGTATACGAAAAACCAGGGGCGTATTTCTGA

Coding sequence (CDS) from alignment at NODE_981_length_15546_cov_4.499191:406..1799-

>Gcaud1696.t1 ID=Gcaud1696.t1|Name=Gcaud1696.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1338bp|location=Sequence derived from alignment at NODE_981_length_15546_cov_4.499191:406..1799- (Gracilaria caudata M_176_S67 male)
ATGAACACCACCGACGCGGACTATCCTAGGCTGCATAAGAAATCTGCTAC
AAGCTGCAAACTGACAAACGACGCCAAACTCGCTATAAGCAACCATGGCG
CTGGTGAGTTATCTATTGTCTGGGATACGCATCAACGCAAAGAAGTGCAC
CGCTTTTCAAACAAAGACGGCATACCATTTTGTATGACCCTTTCGGGCGA
TGGGCGCCGAGCGCTGAGAGTCTTCGTGGACGGAGTGGTAGAACTGCTAG
ATACTTCAAACTGGGGTGTGAAGCACACTCACCGCTTTGAACATGAGCTT
TTGATTAATGTGGAAAGAGTGCTCGGGTGCCATTTGGACGACCATGGTTC
TGAATCTGTGGCTGTTTTTGTAACTGACCAGCATTCGCTGCCTGAGAGGG
AAGATTCTGGATTATTCTGTTTCGTTTTCACAGCAGCTGTTGGCGTACGC
CACTACGGAAGGGGATCGGTACCAGCGGAGGTATGGTTTTTAGACTTGCC
TTCCTTCTTCGTGATTCAGTATCATCCTCTGCATGGCCTTATGGCGGCGG
TAAGTGTAGCTGAGGTAGGTCCCTTGGCAGTCTTAGCCGACACCAGCTCT
CTGTGTCTAGTTAAGTGGGATAAACGTGGTCACGAATCTTCTCTGCTGCC
GAATTACTCAGCAAGTTCAGAAATTTCGTGCGCCATAAGTGCTGACGGAT
CACGAATCTTAGCCACGACCCGCTTTGGATTCGGTGTTTGGGATGCGCGG
CGCAAGTCTTTTGTGGCATGGTTCGATTCCTACAAAGCGTATTCAGGATG
CGGCTCTCTAACACCAAACGGCACAACATTTGTCACTGGCTGTGGTAATG
GATCCGTACACCTTTTTCGTGGCACTCCGACATGGTTTTCTTGCCCTCAC
CAGTCGGTGCTACTTGAACTTACCGAAAAAGAAATAGAGATGAAGGAGAC
TTGTACGAAGTATGCACGCCAATGGCATTTGGAGAACTGCAGCGATGGAG
TGGTTCCGCTGGAAAAGGCAATAGACGGCGTGGAACATATACTTCGAAAA
CTAGATTTACTACCGCTGACTGACGATACTGTGGCGGAAGCGGTCAAATA
CGTGACTATGAGTGAGAGAAGTCGGAGCATGGAAATGAATACAGAAATGT
TTGTGGACGTATTCTATAGGTTGCTGGGCAATGTAGTTGAAGCTTCAGGC
CTAGATCAGTTTCGGAAGGAGTGTACACAACTGTTCCATCTTCATTCGGG
AGATGGTGAAGACGCATCATTGCGTTTTCGTCCTACTGCAGCATGGTTGA
TCATGGATGTATACGAAAAACCAGGGGCGTATTTCTGA