Gcaud1694.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1694.t1
Unique Name	Gcaud1694.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_676_length_19860_cov_4.402802	contig	NODE_676_length_19860_cov_4.402802:13319..14693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703731.1
Preferred name	SBPase
PFAMs	FBPase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017
KEGG ko	ko:K01100
KEGG Reaction	R01845
KEGG Pathway	ko00710,ko01100,ko01120,ko01200,map00710,map01100,map01120,map01200
KEGG Module	M00165,M00167
GOs	GO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006073,GO:0006094,GO:0006793,GO:0006796,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009311,GO:0009312,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0015977,GO:0015979,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019252,GO:0019253,GO:0019318,GO:0019319,GO:0019637,GO:0019685,GO:0030388,GO:0031967,GO:0031975,GO:0033692,GO:0034637,GO:0034645,GO:0042132,GO:0042578,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046364,GO:0048046,GO:0050278,GO:0050308,GO:0050896,GO:0051704,GO:0051707,GO:0071704,GO:0098542,GO:1901135,GO:1901576
Evalue	7.27e-152
EggNOG OGs	COG0158@1\|root,KOG1458@2759\|Eukaryota
EC	3.1.3.37
Description	fructose 1,6-bisphosphate 1-phosphatase activity
COG category	G
BiGG Reaction	iRC1080.CRv4_Au5_s3_g10858_t1
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1694	Gcaud1694	Gracilaria caudata M_176_S67 male	gene	NODE_676_length_19860_cov_4.402802 13319..14693 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1	Gcaud1694.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_676_length_19860_cov_4.402802 13319..14693 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1.start1	Gcaud1694.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_676_length_19860_cov_4.402802 13319..13321 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1.CDS1	Gcaud1694.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 13319..13668 +
Gcaud1694.t1.CDS2	Gcaud1694.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 13754..14332 +
Gcaud1694.t1.CDS3	Gcaud1694.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 14507..14563 +
Gcaud1694.t1.CDS4	Gcaud1694.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 14654..14693 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1.exon1	Gcaud1694.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 13319..13668 +
Gcaud1694.t1.exon2	Gcaud1694.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 13754..14332 +
Gcaud1694.t1.exon3	Gcaud1694.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 14507..14563 +
Gcaud1694.t1.exon4	Gcaud1694.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 14654..14693 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1.intron1	Gcaud1694.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_676_length_19860_cov_4.402802 13669..13753 +
Gcaud1694.t1.intron2	Gcaud1694.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_676_length_19860_cov_4.402802 14333..14506 +
Gcaud1694.t1.intron3	Gcaud1694.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_676_length_19860_cov_4.402802 14564..14653 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1694.t1.stop1	Gcaud1694.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_676_length_19860_cov_4.402802 14691..14693 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+
coding sequence from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+

mRNA sequence

>Gcaud1694.t1 ID=Gcaud1694.t1|Name=Gcaud1694.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MIATGEPLEDWLDRVEKDLGRCTRSIFAACKEIAYKIRTASCDKMSCFND
FGDEQLAIDVLADKVIFDNLTASGVVGMASSEEVPTEKKLIDGGKFCVAF
DPLDGSSIIDTNFSVGTIFGVWKGDSFVGQDGRGVVCAGLAIYGPRTTIT
LAIDGVEGAHEFLLIDDFSAKHGSWIHTAAFYTVNEGKLFAPGNMRAAQD
NPGYAKLLDHYYSQKYQLRYTGGMVPDVNQILVKGKGVFCNPASPSAKAK
LRVLYEVLPIGYVVEKAGGKSSNGAGSVLDMKIKGCEDRSQVCYGSADEV
QRFEEMVGVTSAGAVQPSKKIDRRSVPIEFLPLLFHHSTKF*

spliced messenger RNA

>Gcaud1694.t1 ID=Gcaud1694.t1|Name=Gcaud1694.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCAACGGGTGAACCGTTGGAAGACTGGTTGGATCGCGTGGAGAA
AGACCTGGGTAGATGCACCCGCTCCATCTTCGCCGCTTGCAAGGAGATTG
CTTACAAGATTCGTACCGCGTCGTGCGATAAGATGTCGTGTTTTAACGAC
TTTGGTGATGAGCAGTTGGCGATTGATGTGCTGGCCGATAAGGTTATTTT
TGATAATCTCACTGCGTCCGGCGTTGTGGGTATGGCTAGTTCCGAGGAGG
TACCCACCGAAAAGAAGCTGATCGACGGTGGCAAGTTCTGCGTTGCGTTT
GACCCTCTGGATGGAAGCTCAATCATCGACACCAACTTCTCGGTCGGCAC
AATCTTTGGCGTGTGGAAGGGAGACTCGTTTGTCGGACAGGATGGACGTG
GCGTGGTATGCGCCGGGCTTGCCATCTACGGCCCGCGTACAACCATCACT
CTCGCCATCGACGGTGTGGAGGGCGCGCACGAGTTTTTGCTAATCGACGA
CTTCTCCGCCAAGCACGGCTCGTGGATTCATACCGCCGCGTTCTACACGG
TGAACGAAGGCAAGTTATTCGCGCCCGGAAACATGCGCGCTGCACAGGAC
AACCCCGGCTACGCCAAGCTGCTGGATCACTATTACTCGCAAAAATACCA
GTTGAGATACACAGGCGGTATGGTGCCGGACGTGAACCAGATCCTGGTGA
AGGGCAAGGGCGTGTTCTGTAACCCGGCGTCGCCGTCGGCGAAGGCGAAG
CTGCGCGTGTTGTATGAGGTGTTGCCGATTGGGTATGTGGTTGAGAAGGC
CGGGGGGAAGAGCAGTAATGGAGCGGGTTCGGTGCTGGACATGAAGATTA
AGGGATGTGAGGATCGCTCGCAGGTGTGTTATGGGTCGGCGGATGAGGTG
CAACGCTTCGAGGAGATGGTGGGCGTGACTAGCGCTGGCGCTGTGCAACC
CTCGAAGAAGATTGATCGTCGCAGCGTCCCAATCGAATTCCTTCCCCTAC
TCTTTCATCACTCAACGAAATTCTGA

protein sequence of Gcaud1694.t1

>Gcaud1694.t1 ID=Gcaud1694.t1|Name=Gcaud1694.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MIATGEPLEDWLDRVEKDLGRCTRSIFAACKEIAYKIRTASCDKMSCFND
FGDEQLAIDVLADKVIFDNLTASGVVGMASSEEVPTEKKLIDGGKFCVAF
DPLDGSSIIDTNFSVGTIFGVWKGDSFVGQDGRGVVCAGLAIYGPRTTIT
LAIDGVEGAHEFLLIDDFSAKHGSWIHTAAFYTVNEGKLFAPGNMRAAQD
NPGYAKLLDHYYSQKYQLRYTGGMVPDVNQILVKGKGVFCNPASPSAKAK
LRVLYEVLPIGYVVEKAGGKSSNGAGSVLDMKIKGCEDRSQVCYGSADEV
QRFEEMVGVTSAGAVQPSKKIDRRSVPIEFLPLLFHHSTKF*

mRNA from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1694.t1 ID=Gcaud1694.t1|Name=Gcaud1694.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1375bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+ (Gracilaria caudata M_176_S67 male)
ATGATTGCAACGGGTGAACCGTTGGAAGACTGGTTGGATCGCGTGGAGAA
AGACCTGGGTAGATGCACCCGCTCCATCTTCGCCGCTTGCAAGGAGATTG
CTTACAAGATTCGTACCGCGTCGTGCGATAAGATGTCGTGTTTTAACGAC
TTTGGTGATGAGCAGTTGGCGATTGATGTGCTGGCCGATAAGGTTATTTT
TGATAATCTCACTGCGTCCGGCGTTGTGGGTATGGCTAGTTCCGAGGAGG
TACCCACCGAAAAGAAGCTGATCGACGGTGGCAAGTTCTGCGTTGCGTTT
GACCCTCTGGATGGAAGCTCAATCATCGACACCAACTTCTCGGTCGGCAC
GTAAGTTTTGCCCTCGTCTGGTACTGCAAAGGAGAAAAGCCTTCTGACAC
TTTCTCATTTTGTTTTTTTTGTTGTGCGCACGTAGAATCTTTGGCGTGTG
GAAGGGAGACTCGTTTGTCGGACAGGATGGACGTGGCGTGGTATGCGCCG
GGCTTGCCATCTACGGCCCGCGTACAACCATCACTCTCGCCATCGACGGT
GTGGAGGGCGCGCACGAGTTTTTGCTAATCGACGACTTCTCCGCCAAGCA
CGGCTCGTGGATTCATACCGCCGCGTTCTACACGGTGAACGAAGGCAAGT
TATTCGCGCCCGGAAACATGCGCGCTGCACAGGACAACCCCGGCTACGCC
AAGCTGCTGGATCACTATTACTCGCAAAAATACCAGTTGAGATACACAGG
CGGTATGGTGCCGGACGTGAACCAGATCCTGGTGAAGGGCAAGGGCGTGT
TCTGTAACCCGGCGTCGCCGTCGGCGAAGGCGAAGCTGCGCGTGTTGTAT
GAGGTGTTGCCGATTGGGTATGTGGTTGAGAAGGCCGGGGGGAAGAGCAG
TAATGGAGCGGGTTCGGTGCTGGACATGAAGATTAAGGGATGTGAGGATC
GCTCGCAGGTGTGTTATGGGTCGGCGGATGAGGTGCAACGCTTCGAGGAG
ATGGTGGGCGTGACGTATGCGGTGGAGGCAGCGGCAGCGAAGTAGGAAGG
TGGTGCGGTTGTGTTGTGTAGGGCTGTTGCGTAGCAGTTTTTCTCAAAAA
ACGGTTTGAGCTCAAGGCAGAATGTGTGTTTTAAGTTGGCCTCACGCTGG
TGGAGAGCGTGAGTTTTGACGAAAACGAACTCATACAGTAGCGCTGGCGC
TGTGCAACCCTCGAAGAAGATTGATCGTCGCAGCGTCCCAATCGAGTAAG
GGTTACCATGCAAAGACTGCGCTTGTTTTGCTTTTCAAGTCTTTTTAACA
CTATCAAGTGGCTTCCTTTTTTTCTTCTGCTAAAGATTCCTTCCCCTACT
CTTTCATCACTCAACGAAATTCTGA

Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+

>Gcaud1694.t1 ID=Gcaud1694.t1|Name=Gcaud1694.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:13319..14693+ (Gracilaria caudata M_176_S67 male)
ATGATTGCAACGGGTGAACCGTTGGAAGACTGGTTGGATCGCGTGGAGAA
AGACCTGGGTAGATGCACCCGCTCCATCTTCGCCGCTTGCAAGGAGATTG
CTTACAAGATTCGTACCGCGTCGTGCGATAAGATGTCGTGTTTTAACGAC
TTTGGTGATGAGCAGTTGGCGATTGATGTGCTGGCCGATAAGGTTATTTT
TGATAATCTCACTGCGTCCGGCGTTGTGGGTATGGCTAGTTCCGAGGAGG
TACCCACCGAAAAGAAGCTGATCGACGGTGGCAAGTTCTGCGTTGCGTTT
GACCCTCTGGATGGAAGCTCAATCATCGACACCAACTTCTCGGTCGGCAC
AATCTTTGGCGTGTGGAAGGGAGACTCGTTTGTCGGACAGGATGGACGTG
GCGTGGTATGCGCCGGGCTTGCCATCTACGGCCCGCGTACAACCATCACT
CTCGCCATCGACGGTGTGGAGGGCGCGCACGAGTTTTTGCTAATCGACGA
CTTCTCCGCCAAGCACGGCTCGTGGATTCATACCGCCGCGTTCTACACGG
TGAACGAAGGCAAGTTATTCGCGCCCGGAAACATGCGCGCTGCACAGGAC
AACCCCGGCTACGCCAAGCTGCTGGATCACTATTACTCGCAAAAATACCA
GTTGAGATACACAGGCGGTATGGTGCCGGACGTGAACCAGATCCTGGTGA
AGGGCAAGGGCGTGTTCTGTAACCCGGCGTCGCCGTCGGCGAAGGCGAAG
CTGCGCGTGTTGTATGAGGTGTTGCCGATTGGGTATGTGGTTGAGAAGGC
CGGGGGGAAGAGCAGTAATGGAGCGGGTTCGGTGCTGGACATGAAGATTA
AGGGATGTGAGGATCGCTCGCAGGTGTGTTATGGGTCGGCGGATGAGGTG
CAACGCTTCGAGGAGATGGTGGGCGTGACTAGCGCTGGCGCTGTGCAACC
CTCGAAGAAGATTGATCGTCGCAGCGTCCCAATCGAATTCCTTCCCCTAC
TCTTTCATCACTCAACGAAATTCTGA