Gcaud1693.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1693.t1
Unique NameGcaud1693.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_676_length_19860_cov_4.402802contigNODE_676_length_19860_cov_4.402802:12480..12917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog504472.Slin_5497
PFAMsGGACT
Max annot lvl976|Bacteroidetes
Evalue1.15e-15
EggNOG OGsCOG2105@1|root,COG2105@2|Bacteria,4NUSS@976|Bacteroidetes,47S6A@768503|Cytophagia
DescriptionGamma-glutamyl cyclotransferase, AIG2-like
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1693Gcaud1693Gracilaria caudata M_176_S67 malegeneNODE_676_length_19860_cov_4.402802 12480..12917 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1693.t1.start1Gcaud1693.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_676_length_19860_cov_4.402802 12480..12482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1693.t1.CDS1Gcaud1693.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_676_length_19860_cov_4.402802 12480..12917 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1693.t1.exon1Gcaud1693.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_676_length_19860_cov_4.402802 12480..12917 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1693.t1.stop1Gcaud1693.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_676_length_19860_cov_4.402802 12915..12917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1693.t1Gcaud1693.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_676_length_19860_cov_4.402802 12480..12917 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1693.t1 ID=Gcaud1693.t1|Name=Gcaud1693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MKAAYIFVYGTLRYEYSRLPKSQRRLNPPNVLHSSGTYISTTKLNDFAMY
DIGEYPAIVPCQGSCVVGDVFSIADERVLQLLDEYEGIGGLYERPYEYKR
KSVQIELNGDVVDVWVYVYNWQLHDYECVQDGDYVAHYLSQLQQR*
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spliced messenger RNA

>Gcaud1693.t1 ID=Gcaud1693.t1|Name=Gcaud1693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:12480..12917+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCGGCGTACATCTTCGTGTACGGCACACTTCGCTACGAGTACAG
CCGTCTGCCAAAGTCGCAGCGACGATTAAACCCGCCCAATGTGCTGCATT
CTTCCGGAACGTACATCAGCACCACCAAGTTGAACGACTTTGCGATGTAC
GACATCGGCGAGTATCCCGCCATCGTACCTTGTCAGGGGTCGTGCGTTGT
GGGCGATGTGTTTTCAATAGCCGATGAACGCGTGCTGCAGCTACTGGATG
AGTACGAAGGCATAGGCGGATTATACGAACGACCGTACGAATACAAGCGA
AAGAGCGTGCAGATTGAGCTGAACGGCGACGTTGTGGACGTCTGGGTGTA
TGTGTATAACTGGCAGCTGCACGACTACGAATGCGTGCAAGACGGCGACT
ACGTCGCGCACTATCTCTCCCAACTGCAGCAGCGCTGA
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protein sequence of Gcaud1693.t1

>Gcaud1693.t1 ID=Gcaud1693.t1|Name=Gcaud1693.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MKAAYIFVYGTLRYEYSRLPKSQRRLNPPNVLHSSGTYISTTKLNDFAMY
DIGEYPAIVPCQGSCVVGDVFSIADERVLQLLDEYEGIGGLYERPYEYKR
KSVQIELNGDVVDVWVYVYNWQLHDYECVQDGDYVAHYLSQLQQR*
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mRNA from alignment at NODE_676_length_19860_cov_4.402802:12480..12917+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1693.t1 ID=Gcaud1693.t1|Name=Gcaud1693.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:12480..12917+ (Gracilaria caudata M_176_S67 male)
ATGAAGGCGGCGTACATCTTCGTGTACGGCACACTTCGCTACGAGTACAG
CCGTCTGCCAAAGTCGCAGCGACGATTAAACCCGCCCAATGTGCTGCATT
CTTCCGGAACGTACATCAGCACCACCAAGTTGAACGACTTTGCGATGTAC
GACATCGGCGAGTATCCCGCCATCGTACCTTGTCAGGGGTCGTGCGTTGT
GGGCGATGTGTTTTCAATAGCCGATGAACGCGTGCTGCAGCTACTGGATG
AGTACGAAGGCATAGGCGGATTATACGAACGACCGTACGAATACAAGCGA
AAGAGCGTGCAGATTGAGCTGAACGGCGACGTTGTGGACGTCTGGGTGTA
TGTGTATAACTGGCAGCTGCACGACTACGAATGCGTGCAAGACGGCGACT
ACGTCGCGCACTATCTCTCCCAACTGCAGCAGCGCTGA
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Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:12480..12917+

>Gcaud1693.t1 ID=Gcaud1693.t1|Name=Gcaud1693.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:12480..12917+ (Gracilaria caudata M_176_S67 male)
ATGAAGGCGGCGTACATCTTCGTGTACGGCACACTTCGCTACGAGTACAG
CCGTCTGCCAAAGTCGCAGCGACGATTAAACCCGCCCAATGTGCTGCATT
CTTCCGGAACGTACATCAGCACCACCAAGTTGAACGACTTTGCGATGTAC
GACATCGGCGAGTATCCCGCCATCGTACCTTGTCAGGGGTCGTGCGTTGT
GGGCGATGTGTTTTCAATAGCCGATGAACGCGTGCTGCAGCTACTGGATG
AGTACGAAGGCATAGGCGGATTATACGAACGACCGTACGAATACAAGCGA
AAGAGCGTGCAGATTGAGCTGAACGGCGACGTTGTGGACGTCTGGGTGTA
TGTGTATAACTGGCAGCTGCACGACTACGAATGCGTGCAAGACGGCGACT
ACGTCGCGCACTATCTCTCCCAACTGCAGCAGCGCTGA
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