Gcaud1692.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1692.t1
Unique Name	Gcaud1692.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_676_length_19860_cov_4.402802	contig	NODE_676_length_19860_cov_4.402802:10839..12203 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN20158
PFAMs	RIO1,Rio2_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07179
KEGG Pathway	ko03008,map03008
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
Evalue	4.5e-109
EggNOG OGs	COG0478@1\|root,KOG2268@2759\|Eukaryota,37MZW@33090\|Viridiplantae,3GD34@35493\|Streptophyta
EC	2.7.11.1
Description	serine threonine-protein kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1692	Gcaud1692	Gracilaria caudata M_176_S67 male	gene	NODE_676_length_19860_cov_4.402802 10839..12203 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1692.t1.stop1	Gcaud1692.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_676_length_19860_cov_4.402802 10839..10841 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1692.t1.CDS1	Gcaud1692.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 10839..12203 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1692.t1.exon1	Gcaud1692.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 10839..12203 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1692.t1.start1	Gcaud1692.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_676_length_19860_cov_4.402802 12201..12203 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1692.t1	Gcaud1692.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_676_length_19860_cov_4.402802 10839..12203 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_676_length_19860_cov_4.402802:10839..12203-
coding sequence from alignment at NODE_676_length_19860_cov_4.402802:10839..12203-

mRNA sequence

>Gcaud1692.t1 ID=Gcaud1692.t1|Name=Gcaud1692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=455bp
MKLDPAALRYLTEDDFRVLTAVEMGMRNHQVVPIPLISAISGLKHGGYMK
SLKQVHKHKLVHRDSKPYVGYRLTSMGYDYLALNALVKRGVIDAVGRPLG
VGKEADVFVVSASETLMDQYPELADTPHLAMKLHRLGRTSFRAVKSKRDY
LVHRKSASWIYFSRLAAMKEYAFMCALHARHFPVPRPLGQSRHVVVMELC
PGTLLTHINEMPQPKEVANNLIQVAIRLAQHGLVHCDLNEFNVIVDDDGT
VNVIDFPQMVSTRHADADQLFARDVDGIRKFFEHKFGVPAHDMLNPSLAE
IVRETSQQEQLDVVLSASGFKNLQEEGFYGIQDLDEQDEEDGALAVDIHS
LRISTPAELEQKDIHSTSSERPQQDLEITASEQEIKQESQQADVDIDPSE
YMSPSGAINKSLIEMRVRRQRANQARRRQLSKRNIVKDSQKRKLKSEVES
EVWD*

spliced messenger RNA

>Gcaud1692.t1 ID=Gcaud1692.t1|Name=Gcaud1692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:10839..12203- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGATCCCGCCGCGCTACGCTACCTCACCGAAGATGACTTCCG
CGTGCTCACCGCCGTGGAAATGGGCATGCGAAACCATCAGGTCGTCCCCA
TCCCGCTCATATCCGCCATTTCCGGTCTCAAGCACGGCGGCTACATGAAG
TCGCTCAAGCAAGTACACAAACACAAGCTGGTGCACCGCGACAGCAAGCC
GTACGTCGGCTACAGACTCACCTCCATGGGCTACGATTACCTCGCGCTCA
ACGCCCTCGTCAAACGCGGCGTCATCGACGCCGTGGGACGCCCCCTGGGC
GTCGGCAAAGAGGCTGATGTGTTTGTTGTTTCCGCCTCTGAAACTCTTAT
GGATCAGTATCCGGAGCTGGCCGATACGCCGCATCTGGCAATGAAACTGC
ATCGGTTGGGACGTACTTCGTTTCGAGCTGTCAAGAGCAAGAGGGATTAT
TTGGTGCATCGCAAATCTGCGAGTTGGATTTACTTTTCGAGACTGGCTGC
TATGAAGGAATACGCTTTTATGTGCGCCTTACATGCGCGTCATTTCCCGG
TACCGAGACCGTTGGGTCAGTCTCGTCACGTTGTTGTCATGGAACTGTGC
CCCGGTACTTTGCTCACTCACATAAATGAGATGCCGCAACCTAAGGAAGT
TGCCAATAATCTCATACAAGTTGCCATCAGGCTTGCGCAGCATGGGTTAG
TGCATTGCGATCTAAACGAATTCAATGTCATTGTCGATGATGACGGCACC
GTCAATGTGATTGACTTTCCGCAGATGGTTTCCACGCGCCATGCGGATGC
AGACCAGTTGTTTGCTCGTGATGTGGATGGCATACGAAAGTTTTTTGAAC
ACAAGTTTGGTGTTCCTGCACACGATATGTTAAACCCATCTTTAGCCGAA
ATCGTTCGAGAAACGAGTCAACAAGAGCAGCTGGATGTGGTTCTGTCGGC
GAGCGGATTCAAAAATCTTCAAGAAGAAGGCTTCTATGGCATTCAGGACT
TGGATGAGCAAGATGAAGAGGACGGTGCATTAGCGGTTGACATCCACAGC
CTGCGCATCTCTACCCCTGCCGAACTTGAACAAAAAGACATCCATTCCAC
AAGTTCTGAAAGGCCTCAACAGGATCTGGAAATTACAGCTTCTGAACAAG
AGATAAAGCAAGAATCTCAGCAAGCTGACGTCGATATCGACCCATCCGAA
TACATGAGTCCGAGCGGCGCCATTAATAAATCTCTCATCGAAATGCGAGT
GCGAAGACAAAGGGCCAATCAAGCCAGAAGACGTCAACTGTCAAAGAGAA
ATATAGTCAAAGACTCTCAAAAACGGAAGCTCAAATCTGAAGTTGAAAGC
GAAGTATGGGATTAA

protein sequence of Gcaud1692.t1

>Gcaud1692.t1 ID=Gcaud1692.t1|Name=Gcaud1692.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=455bp
MKLDPAALRYLTEDDFRVLTAVEMGMRNHQVVPIPLISAISGLKHGGYMK
SLKQVHKHKLVHRDSKPYVGYRLTSMGYDYLALNALVKRGVIDAVGRPLG
VGKEADVFVVSASETLMDQYPELADTPHLAMKLHRLGRTSFRAVKSKRDY
LVHRKSASWIYFSRLAAMKEYAFMCALHARHFPVPRPLGQSRHVVVMELC
PGTLLTHINEMPQPKEVANNLIQVAIRLAQHGLVHCDLNEFNVIVDDDGT
VNVIDFPQMVSTRHADADQLFARDVDGIRKFFEHKFGVPAHDMLNPSLAE
IVRETSQQEQLDVVLSASGFKNLQEEGFYGIQDLDEQDEEDGALAVDIHS
LRISTPAELEQKDIHSTSSERPQQDLEITASEQEIKQESQQADVDIDPSE
YMSPSGAINKSLIEMRVRRQRANQARRRQLSKRNIVKDSQKRKLKSEVES
EVWD*

mRNA from alignment at NODE_676_length_19860_cov_4.402802:10839..12203-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1692.t1 ID=Gcaud1692.t1|Name=Gcaud1692.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:10839..12203- (Gracilaria caudata M_176_S67 male)
ATGAAGCTTGATCCCGCCGCGCTACGCTACCTCACCGAAGATGACTTCCG
CGTGCTCACCGCCGTGGAAATGGGCATGCGAAACCATCAGGTCGTCCCCA
TCCCGCTCATATCCGCCATTTCCGGTCTCAAGCACGGCGGCTACATGAAG
TCGCTCAAGCAAGTACACAAACACAAGCTGGTGCACCGCGACAGCAAGCC
GTACGTCGGCTACAGACTCACCTCCATGGGCTACGATTACCTCGCGCTCA
ACGCCCTCGTCAAACGCGGCGTCATCGACGCCGTGGGACGCCCCCTGGGC
GTCGGCAAAGAGGCTGATGTGTTTGTTGTTTCCGCCTCTGAAACTCTTAT
GGATCAGTATCCGGAGCTGGCCGATACGCCGCATCTGGCAATGAAACTGC
ATCGGTTGGGACGTACTTCGTTTCGAGCTGTCAAGAGCAAGAGGGATTAT
TTGGTGCATCGCAAATCTGCGAGTTGGATTTACTTTTCGAGACTGGCTGC
TATGAAGGAATACGCTTTTATGTGCGCCTTACATGCGCGTCATTTCCCGG
TACCGAGACCGTTGGGTCAGTCTCGTCACGTTGTTGTCATGGAACTGTGC
CCCGGTACTTTGCTCACTCACATAAATGAGATGCCGCAACCTAAGGAAGT
TGCCAATAATCTCATACAAGTTGCCATCAGGCTTGCGCAGCATGGGTTAG
TGCATTGCGATCTAAACGAATTCAATGTCATTGTCGATGATGACGGCACC
GTCAATGTGATTGACTTTCCGCAGATGGTTTCCACGCGCCATGCGGATGC
AGACCAGTTGTTTGCTCGTGATGTGGATGGCATACGAAAGTTTTTTGAAC
ACAAGTTTGGTGTTCCTGCACACGATATGTTAAACCCATCTTTAGCCGAA
ATCGTTCGAGAAACGAGTCAACAAGAGCAGCTGGATGTGGTTCTGTCGGC
GAGCGGATTCAAAAATCTTCAAGAAGAAGGCTTCTATGGCATTCAGGACT
TGGATGAGCAAGATGAAGAGGACGGTGCATTAGCGGTTGACATCCACAGC
CTGCGCATCTCTACCCCTGCCGAACTTGAACAAAAAGACATCCATTCCAC
AAGTTCTGAAAGGCCTCAACAGGATCTGGAAATTACAGCTTCTGAACAAG
AGATAAAGCAAGAATCTCAGCAAGCTGACGTCGATATCGACCCATCCGAA
TACATGAGTCCGAGCGGCGCCATTAATAAATCTCTCATCGAAATGCGAGT
GCGAAGACAAAGGGCCAATCAAGCCAGAAGACGTCAACTGTCAAAGAGAA
ATATAGTCAAAGACTCTCAAAAACGGAAGCTCAAATCTGAAGTTGAAAGC
GAAGTATGGGATTAA

Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:10839..12203-

>Gcaud1692.t1 ID=Gcaud1692.t1|Name=Gcaud1692.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1365bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:10839..12203- (Gracilaria caudata M_176_S67 male)
ATGAAGCTTGATCCCGCCGCGCTACGCTACCTCACCGAAGATGACTTCCG
CGTGCTCACCGCCGTGGAAATGGGCATGCGAAACCATCAGGTCGTCCCCA
TCCCGCTCATATCCGCCATTTCCGGTCTCAAGCACGGCGGCTACATGAAG
TCGCTCAAGCAAGTACACAAACACAAGCTGGTGCACCGCGACAGCAAGCC
GTACGTCGGCTACAGACTCACCTCCATGGGCTACGATTACCTCGCGCTCA
ACGCCCTCGTCAAACGCGGCGTCATCGACGCCGTGGGACGCCCCCTGGGC
GTCGGCAAAGAGGCTGATGTGTTTGTTGTTTCCGCCTCTGAAACTCTTAT
GGATCAGTATCCGGAGCTGGCCGATACGCCGCATCTGGCAATGAAACTGC
ATCGGTTGGGACGTACTTCGTTTCGAGCTGTCAAGAGCAAGAGGGATTAT
TTGGTGCATCGCAAATCTGCGAGTTGGATTTACTTTTCGAGACTGGCTGC
TATGAAGGAATACGCTTTTATGTGCGCCTTACATGCGCGTCATTTCCCGG
TACCGAGACCGTTGGGTCAGTCTCGTCACGTTGTTGTCATGGAACTGTGC
CCCGGTACTTTGCTCACTCACATAAATGAGATGCCGCAACCTAAGGAAGT
TGCCAATAATCTCATACAAGTTGCCATCAGGCTTGCGCAGCATGGGTTAG
TGCATTGCGATCTAAACGAATTCAATGTCATTGTCGATGATGACGGCACC
GTCAATGTGATTGACTTTCCGCAGATGGTTTCCACGCGCCATGCGGATGC
AGACCAGTTGTTTGCTCGTGATGTGGATGGCATACGAAAGTTTTTTGAAC
ACAAGTTTGGTGTTCCTGCACACGATATGTTAAACCCATCTTTAGCCGAA
ATCGTTCGAGAAACGAGTCAACAAGAGCAGCTGGATGTGGTTCTGTCGGC
GAGCGGATTCAAAAATCTTCAAGAAGAAGGCTTCTATGGCATTCAGGACT
TGGATGAGCAAGATGAAGAGGACGGTGCATTAGCGGTTGACATCCACAGC
CTGCGCATCTCTACCCCTGCCGAACTTGAACAAAAAGACATCCATTCCAC
AAGTTCTGAAAGGCCTCAACAGGATCTGGAAATTACAGCTTCTGAACAAG
AGATAAAGCAAGAATCTCAGCAAGCTGACGTCGATATCGACCCATCCGAA
TACATGAGTCCGAGCGGCGCCATTAATAAATCTCTCATCGAAATGCGAGT
GCGAAGACAAAGGGCCAATCAAGCCAGAAGACGTCAACTGTCAAAGAGAA
ATATAGTCAAAGACTCTCAAAAACGGAAGCTCAAATCTGAAGTTGAAAGC
GAAGTATGGGATTAA