Gcaud1690.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1690.t1
Unique Name	Gcaud1690.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_676_length_19860_cov_4.402802	contig	NODE_676_length_19860_cov_4.402802:5791..6879 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	123214.PERMA_0605
PFAMs	Cofac_haem_bdg
Max annot lvl	200783\|Aquificae
Evalue	1.77e-36
EggNOG OGs	COG0308@1\|root,COG0750@1\|root,COG3016@1\|root,COG0308@2\|Bacteria,COG0750@2\|Bacteria,COG3016@2\|Bacteria,2G4YW@200783\|Aquificae
Description	Haem-binding uptake, Tiki superfamily, ChaN
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1690	Gcaud1690	Gracilaria caudata M_176_S67 male	gene	NODE_676_length_19860_cov_4.402802 5791..6879 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1690.t1.start1	Gcaud1690.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_676_length_19860_cov_4.402802 5791..5793 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1690.t1.CDS1	Gcaud1690.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 5791..6879 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1690.t1.exon1	Gcaud1690.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 5791..6879 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1690.t1.stop1	Gcaud1690.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_676_length_19860_cov_4.402802 6877..6879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1690.t1	Gcaud1690.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_676_length_19860_cov_4.402802 5791..6879 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+
coding sequence from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+

mRNA sequence

>Gcaud1690.t1 ID=Gcaud1690.t1|Name=Gcaud1690.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp
MQTAFLTPLPVKGLTATQNLIHRGPRRLVTSKAQYSHAERSQGLSRRELL
KGLSIATLGVGLPSSAPQPALSRQFRDSDFVFDAKSGSFVPPSAIDNLLH
RDRGSRFDRCIVAGEIHDNMRTHAAQLAVIDSARRMGDGRKLVVGFEQFY
RTHNHLLDLYVNDLLSVNSLLQVTDWDSTWGVDPKLYIPIFEYCRLYGIS
MVGLNIPRQFVRFVSRLGLDGLPEELKAFLPDNMDFSNREHYEHFVKLIS
EGHGDHIRNKAVLDRYYEVQVLWEEWMSQSVAQSLQSRPDTRMVALIGTG
HVEGRYGFPDRIEKRCSERPYTIVPRPVAWQRDDGYSLPQIPEPEKNVAD
LVWYTRRPIDLV*

spliced messenger RNA

>Gcaud1690.t1 ID=Gcaud1690.t1|Name=Gcaud1690.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACAGCTTTTCTAACTCCGCTGCCGGTAAAGGGATTAACTGCAAC
GCAGAACTTGATCCACCGCGGGCCACGTCGTCTAGTAACATCTAAAGCTC
AGTACTCCCACGCCGAACGATCACAGGGGCTCAGCAGAAGGGAATTGCTA
AAGGGGTTATCTATCGCAACTCTCGGAGTAGGGCTCCCTTCTTCAGCCCC
GCAACCTGCTCTAAGTCGACAATTTCGCGACTCTGATTTCGTGTTCGATG
CAAAAAGCGGCTCCTTTGTTCCGCCTTCAGCAATCGACAATCTTTTGCAT
CGAGATCGAGGGTCCCGATTTGATCGCTGTATTGTCGCAGGCGAGATACA
TGATAATATGAGAACTCATGCTGCGCAGCTTGCCGTAATTGATAGCGCAC
GTCGCATGGGTGATGGGAGAAAACTCGTAGTTGGATTCGAACAGTTCTAT
CGCACCCATAATCATCTTCTTGATCTCTATGTGAACGACCTTCTTTCGGT
GAATTCCCTGTTACAGGTCACGGACTGGGACTCCACATGGGGTGTGGATC
CGAAGTTATACATTCCAATATTCGAGTACTGCCGTTTGTATGGAATTTCT
ATGGTTGGCTTGAATATACCGCGACAGTTTGTCCGATTTGTTTCTCGGCT
TGGGCTTGACGGTCTTCCAGAGGAACTAAAAGCGTTCCTACCGGACAATA
TGGACTTCAGCAATCGTGAGCACTATGAGCATTTTGTAAAACTCATTTCA
GAAGGCCACGGCGACCATATTCGGAACAAGGCAGTTCTGGACCGTTACTA
CGAAGTACAGGTATTGTGGGAAGAGTGGATGAGTCAATCTGTGGCTCAAT
CGCTACAGTCGAGGCCAGATACTCGAATGGTAGCGTTGATTGGAACTGGG
CATGTTGAAGGAAGGTATGGCTTCCCTGATCGAATTGAAAAGAGATGTAG
CGAACGTCCGTATACGATAGTACCTCGCCCGGTTGCGTGGCAGCGAGATG
ACGGGTATAGCCTGCCACAGATTCCTGAACCAGAGAAGAATGTCGCAGAC
CTTGTTTGGTACACACGGAGGCCCATTGATCTCGTGTGA

protein sequence of Gcaud1690.t1

>Gcaud1690.t1 ID=Gcaud1690.t1|Name=Gcaud1690.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=363bp
MQTAFLTPLPVKGLTATQNLIHRGPRRLVTSKAQYSHAERSQGLSRRELL
KGLSIATLGVGLPSSAPQPALSRQFRDSDFVFDAKSGSFVPPSAIDNLLH
RDRGSRFDRCIVAGEIHDNMRTHAAQLAVIDSARRMGDGRKLVVGFEQFY
RTHNHLLDLYVNDLLSVNSLLQVTDWDSTWGVDPKLYIPIFEYCRLYGIS
MVGLNIPRQFVRFVSRLGLDGLPEELKAFLPDNMDFSNREHYEHFVKLIS
EGHGDHIRNKAVLDRYYEVQVLWEEWMSQSVAQSLQSRPDTRMVALIGTG
HVEGRYGFPDRIEKRCSERPYTIVPRPVAWQRDDGYSLPQIPEPEKNVAD
LVWYTRRPIDLV*

mRNA from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1690.t1 ID=Gcaud1690.t1|Name=Gcaud1690.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+ (Gracilaria caudata M_176_S67 male)
ATGCAAACAGCTTTTCTAACTCCGCTGCCGGTAAAGGGATTAACTGCAAC
GCAGAACTTGATCCACCGCGGGCCACGTCGTCTAGTAACATCTAAAGCTC
AGTACTCCCACGCCGAACGATCACAGGGGCTCAGCAGAAGGGAATTGCTA
AAGGGGTTATCTATCGCAACTCTCGGAGTAGGGCTCCCTTCTTCAGCCCC
GCAACCTGCTCTAAGTCGACAATTTCGCGACTCTGATTTCGTGTTCGATG
CAAAAAGCGGCTCCTTTGTTCCGCCTTCAGCAATCGACAATCTTTTGCAT
CGAGATCGAGGGTCCCGATTTGATCGCTGTATTGTCGCAGGCGAGATACA
TGATAATATGAGAACTCATGCTGCGCAGCTTGCCGTAATTGATAGCGCAC
GTCGCATGGGTGATGGGAGAAAACTCGTAGTTGGATTCGAACAGTTCTAT
CGCACCCATAATCATCTTCTTGATCTCTATGTGAACGACCTTCTTTCGGT
GAATTCCCTGTTACAGGTCACGGACTGGGACTCCACATGGGGTGTGGATC
CGAAGTTATACATTCCAATATTCGAGTACTGCCGTTTGTATGGAATTTCT
ATGGTTGGCTTGAATATACCGCGACAGTTTGTCCGATTTGTTTCTCGGCT
TGGGCTTGACGGTCTTCCAGAGGAACTAAAAGCGTTCCTACCGGACAATA
TGGACTTCAGCAATCGTGAGCACTATGAGCATTTTGTAAAACTCATTTCA
GAAGGCCACGGCGACCATATTCGGAACAAGGCAGTTCTGGACCGTTACTA
CGAAGTACAGGTATTGTGGGAAGAGTGGATGAGTCAATCTGTGGCTCAAT
CGCTACAGTCGAGGCCAGATACTCGAATGGTAGCGTTGATTGGAACTGGG
CATGTTGAAGGAAGGTATGGCTTCCCTGATCGAATTGAAAAGAGATGTAG
CGAACGTCCGTATACGATAGTACCTCGCCCGGTTGCGTGGCAGCGAGATG
ACGGGTATAGCCTGCCACAGATTCCTGAACCAGAGAAGAATGTCGCAGAC
CTTGTTTGGTACACACGGAGGCCCATTGATCTCGTGTGA

Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+

>Gcaud1690.t1 ID=Gcaud1690.t1|Name=Gcaud1690.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1089bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:5791..6879+ (Gracilaria caudata M_176_S67 male)
ATGCAAACAGCTTTTCTAACTCCGCTGCCGGTAAAGGGATTAACTGCAAC
GCAGAACTTGATCCACCGCGGGCCACGTCGTCTAGTAACATCTAAAGCTC
AGTACTCCCACGCCGAACGATCACAGGGGCTCAGCAGAAGGGAATTGCTA
AAGGGGTTATCTATCGCAACTCTCGGAGTAGGGCTCCCTTCTTCAGCCCC
GCAACCTGCTCTAAGTCGACAATTTCGCGACTCTGATTTCGTGTTCGATG
CAAAAAGCGGCTCCTTTGTTCCGCCTTCAGCAATCGACAATCTTTTGCAT
CGAGATCGAGGGTCCCGATTTGATCGCTGTATTGTCGCAGGCGAGATACA
TGATAATATGAGAACTCATGCTGCGCAGCTTGCCGTAATTGATAGCGCAC
GTCGCATGGGTGATGGGAGAAAACTCGTAGTTGGATTCGAACAGTTCTAT
CGCACCCATAATCATCTTCTTGATCTCTATGTGAACGACCTTCTTTCGGT
GAATTCCCTGTTACAGGTCACGGACTGGGACTCCACATGGGGTGTGGATC
CGAAGTTATACATTCCAATATTCGAGTACTGCCGTTTGTATGGAATTTCT
ATGGTTGGCTTGAATATACCGCGACAGTTTGTCCGATTTGTTTCTCGGCT
TGGGCTTGACGGTCTTCCAGAGGAACTAAAAGCGTTCCTACCGGACAATA
TGGACTTCAGCAATCGTGAGCACTATGAGCATTTTGTAAAACTCATTTCA
GAAGGCCACGGCGACCATATTCGGAACAAGGCAGTTCTGGACCGTTACTA
CGAAGTACAGGTATTGTGGGAAGAGTGGATGAGTCAATCTGTGGCTCAAT
CGCTACAGTCGAGGCCAGATACTCGAATGGTAGCGTTGATTGGAACTGGG
CATGTTGAAGGAAGGTATGGCTTCCCTGATCGAATTGAAAAGAGATGTAG
CGAACGTCCGTATACGATAGTACCTCGCCCGGTTGCGTGGCAGCGAGATG
ACGGGTATAGCCTGCCACAGATTCCTGAACCAGAGAAGAATGTCGCAGAC
CTTGTTTGGTACACACGGAGGCCCATTGATCTCGTGTGA