Gcaud1689.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1689.t1
Unique Name	Gcaud1689.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_676_length_19860_cov_4.402802	contig	NODE_676_length_19860_cov_4.402802:2850..4760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707910.1
Preferred name	ACLB-1
PFAMs	ATP-grasp_2,Citrate_bind,Citrate_synt,CoA_binding,Ligase_CoA
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00004,RC00067
KEGG ko	ko:K01648
KEGG Reaction	R00352
KEGG Pathway	ko00020,ko00720,ko01100,ko01110,ko01120,ko01130,map00020,map00720,map01100,map01110,map01120,map01130
GOs	GO:0003674,GO:0003824,GO:0003878,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006084,GO:0006085,GO:0006091,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009346,GO:0009987,GO:0016020,GO:0016053,GO:0016740,GO:0016746,GO:0016999,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046390,GO:0046394,GO:0046483,GO:0046912,GO:0051186,GO:0051188,GO:0055086,GO:0071616,GO:0071704,GO:0071944,GO:0072330,GO:0072350,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	1.93e-300
EggNOG OGs	COG0045@1\|root,KOG1254@2759\|Eukaryota
EC	2.3.3.8
Description	ATP citrate synthase activity
COG category	C
BRITE	ko00000,ko00001,ko01000,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1689	Gcaud1689	Gracilaria caudata M_176_S67 male	gene	NODE_676_length_19860_cov_4.402802 2850..4760 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1689.t1.start1	Gcaud1689.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_676_length_19860_cov_4.402802 2850..2852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1689.t1.CDS1	Gcaud1689.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_676_length_19860_cov_4.402802 2850..4760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1689.t1.exon1	Gcaud1689.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_676_length_19860_cov_4.402802 2850..4760 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1689.t1.stop1	Gcaud1689.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_676_length_19860_cov_4.402802 4758..4760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1689.t1	Gcaud1689.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_676_length_19860_cov_4.402802 2850..4760 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+
coding sequence from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+

mRNA sequence

>Gcaud1689.t1 ID=Gcaud1689.t1|Name=Gcaud1689.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=637bp
MPSLSQPGSAASKAGALFSRDSTAIFYNYKRNPIQRMLDFDFICARATPS
VAAIVSQGAAPGGFQKAFFGKEEVAIPVYGSTEAACAAHPNSDVFINFAS
YRSAYQSSFNALTQSTIRTIAIIAEGVPERDTKKLIAYANRTGKVIIGPA
TVGGVQAGAFKIGDTAGTVENIINCKLHRPGSVGFVSKSGGLSNEMYNVL
ARVTDGLYEGIAVGGDAYAGSGLADHVLRFQSLPQVKLIVLLGELGGTDE
YGVVEALQSGRITKPVVAWVSGTCAKWFNAAEVQFGHAGAKTGGADESAE
AKNEALRKAGAHVPENFDGFANMIHNVYERMVDEGVLEPAKDIKPPNLPQ
DLASAVKAGAVRKTTNVVCTISNDTGEEPTYVRVPISEIMSDHTIGDVIS
LLWFKTLFPKWATKFIELVLVTAADHGPCVSGAHNTIVAARAGKDLISSL
CSGLLTIGPRFGGAVDAAAINFKTASDNNIPPDEFVEALKKKGQRVEGIG
HRIKTAENRDKRVELLANYAKQHFPRMDTFNYAKKVEEYTLQKANNLVLN
IDGAIGSLFADMLRGVGKYTDTEVMEVLELGGLNGLFTLSRSIGFIGHAL
DQKRMKQPLYRHPWDDVLYAEPERPSRLDDSDEALE*

spliced messenger RNA

>Gcaud1689.t1 ID=Gcaud1689.t1|Name=Gcaud1689.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCACTTTCGCAACCCGGTTCAGCTGCTTCTAAAGCTGGGGCTCT
CTTCTCAAGGGACTCAACTGCAATCTTTTACAACTATAAGCGCAATCCGA
TCCAGCGTATGCTCGATTTCGATTTTATTTGTGCCAGAGCTACTCCATCC
GTTGCGGCAATTGTTTCTCAGGGTGCGGCACCTGGTGGTTTTCAGAAAGC
GTTCTTCGGTAAGGAAGAAGTTGCAATTCCAGTGTATGGATCCACTGAAG
CTGCATGCGCCGCCCACCCGAATTCGGATGTGTTCATCAACTTTGCGTCG
TATCGATCTGCTTACCAGAGTTCGTTCAACGCTCTGACGCAATCTACAAT
CAGAACTATTGCCATAATTGCCGAGGGTGTACCAGAGCGTGATACGAAGA
AGCTGATCGCCTACGCCAACAGAACGGGCAAAGTTATCATTGGCCCAGCC
ACGGTCGGAGGCGTTCAAGCTGGCGCCTTTAAAATCGGTGATACGGCTGG
TACCGTTGAGAATATCATTAACTGCAAGCTTCATCGTCCTGGAAGTGTTG
GCTTTGTTTCAAAGTCTGGCGGATTGTCCAATGAAATGTATAACGTTCTA
GCGAGGGTTACCGATGGTTTATATGAAGGAATCGCAGTTGGCGGTGATGC
CTATGCAGGATCTGGTCTTGCTGACCATGTCCTTCGATTCCAATCATTAC
CACAAGTCAAGCTTATCGTGCTGCTCGGAGAGCTGGGTGGAACCGATGAA
TATGGAGTTGTTGAAGCTTTACAAAGCGGTCGCATTACTAAGCCTGTTGT
CGCGTGGGTTAGTGGAACCTGCGCAAAATGGTTCAATGCTGCTGAGGTGC
AATTCGGACACGCTGGCGCTAAGACTGGAGGGGCAGATGAAAGTGCGGAG
GCGAAAAACGAAGCACTGAGAAAGGCCGGGGCGCACGTACCCGAGAATTT
CGATGGATTTGCAAACATGATCCATAACGTTTACGAAAGAATGGTTGATG
AGGGAGTGCTCGAACCAGCAAAAGATATCAAACCTCCAAATCTTCCACAA
GATCTGGCCTCCGCTGTTAAAGCTGGAGCTGTTCGAAAGACTACAAATGT
CGTTTGTACGATCAGCAATGATACCGGAGAGGAGCCGACGTACGTGCGCG
TCCCTATCTCTGAGATCATGAGTGATCACACCATCGGCGATGTAATCTCA
TTGCTGTGGTTCAAGACGCTCTTCCCAAAGTGGGCCACCAAGTTCATCGA
ACTTGTTTTGGTCACAGCCGCGGATCACGGACCTTGCGTTTCAGGAGCAC
ACAATACAATCGTCGCCGCACGTGCTGGAAAGGATTTAATAAGTTCGCTT
TGCAGTGGGTTGCTCACTATTGGGCCTCGTTTTGGAGGCGCCGTCGATGC
GGCTGCAATCAACTTTAAAACGGCAAGCGACAACAATATTCCTCCTGACG
AGTTCGTAGAAGCTCTGAAAAAGAAAGGACAGAGAGTTGAGGGAATAGGA
CACCGAATCAAGACAGCAGAGAATCGAGATAAGCGCGTTGAGCTTTTGGC
AAACTATGCCAAACAGCATTTCCCGAGGATGGACACGTTCAATTACGCGA
AAAAGGTGGAGGAGTACACCCTTCAGAAAGCCAACAATTTGGTTCTTAAC
ATTGATGGAGCCATAGGATCTTTGTTCGCGGACATGCTTCGTGGAGTGGG
CAAATACACTGACACCGAGGTAATGGAGGTTCTCGAACTTGGCGGGTTAA
ACGGGCTTTTCACATTAAGTCGAAGCATTGGATTTATCGGTCATGCTCTT
GACCAGAAGCGCATGAAACAACCCTTGTATAGGCATCCTTGGGACGATGT
CCTATATGCCGAACCAGAACGTCCGAGTAGACTGGATGACAGTGATGAAG
CCCTTGAGTAA

protein sequence of Gcaud1689.t1

>Gcaud1689.t1 ID=Gcaud1689.t1|Name=Gcaud1689.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=637bp
MPSLSQPGSAASKAGALFSRDSTAIFYNYKRNPIQRMLDFDFICARATPS
VAAIVSQGAAPGGFQKAFFGKEEVAIPVYGSTEAACAAHPNSDVFINFAS
YRSAYQSSFNALTQSTIRTIAIIAEGVPERDTKKLIAYANRTGKVIIGPA
TVGGVQAGAFKIGDTAGTVENIINCKLHRPGSVGFVSKSGGLSNEMYNVL
ARVTDGLYEGIAVGGDAYAGSGLADHVLRFQSLPQVKLIVLLGELGGTDE
YGVVEALQSGRITKPVVAWVSGTCAKWFNAAEVQFGHAGAKTGGADESAE
AKNEALRKAGAHVPENFDGFANMIHNVYERMVDEGVLEPAKDIKPPNLPQ
DLASAVKAGAVRKTTNVVCTISNDTGEEPTYVRVPISEIMSDHTIGDVIS
LLWFKTLFPKWATKFIELVLVTAADHGPCVSGAHNTIVAARAGKDLISSL
CSGLLTIGPRFGGAVDAAAINFKTASDNNIPPDEFVEALKKKGQRVEGIG
HRIKTAENRDKRVELLANYAKQHFPRMDTFNYAKKVEEYTLQKANNLVLN
IDGAIGSLFADMLRGVGKYTDTEVMEVLELGGLNGLFTLSRSIGFIGHAL
DQKRMKQPLYRHPWDDVLYAEPERPSRLDDSDEALE*

mRNA from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1689.t1 ID=Gcaud1689.t1|Name=Gcaud1689.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+ (Gracilaria caudata M_176_S67 male)
ATGCCTTCACTTTCGCAACCCGGTTCAGCTGCTTCTAAAGCTGGGGCTCT
CTTCTCAAGGGACTCAACTGCAATCTTTTACAACTATAAGCGCAATCCGA
TCCAGCGTATGCTCGATTTCGATTTTATTTGTGCCAGAGCTACTCCATCC
GTTGCGGCAATTGTTTCTCAGGGTGCGGCACCTGGTGGTTTTCAGAAAGC
GTTCTTCGGTAAGGAAGAAGTTGCAATTCCAGTGTATGGATCCACTGAAG
CTGCATGCGCCGCCCACCCGAATTCGGATGTGTTCATCAACTTTGCGTCG
TATCGATCTGCTTACCAGAGTTCGTTCAACGCTCTGACGCAATCTACAAT
CAGAACTATTGCCATAATTGCCGAGGGTGTACCAGAGCGTGATACGAAGA
AGCTGATCGCCTACGCCAACAGAACGGGCAAAGTTATCATTGGCCCAGCC
ACGGTCGGAGGCGTTCAAGCTGGCGCCTTTAAAATCGGTGATACGGCTGG
TACCGTTGAGAATATCATTAACTGCAAGCTTCATCGTCCTGGAAGTGTTG
GCTTTGTTTCAAAGTCTGGCGGATTGTCCAATGAAATGTATAACGTTCTA
GCGAGGGTTACCGATGGTTTATATGAAGGAATCGCAGTTGGCGGTGATGC
CTATGCAGGATCTGGTCTTGCTGACCATGTCCTTCGATTCCAATCATTAC
CACAAGTCAAGCTTATCGTGCTGCTCGGAGAGCTGGGTGGAACCGATGAA
TATGGAGTTGTTGAAGCTTTACAAAGCGGTCGCATTACTAAGCCTGTTGT
CGCGTGGGTTAGTGGAACCTGCGCAAAATGGTTCAATGCTGCTGAGGTGC
AATTCGGACACGCTGGCGCTAAGACTGGAGGGGCAGATGAAAGTGCGGAG
GCGAAAAACGAAGCACTGAGAAAGGCCGGGGCGCACGTACCCGAGAATTT
CGATGGATTTGCAAACATGATCCATAACGTTTACGAAAGAATGGTTGATG
AGGGAGTGCTCGAACCAGCAAAAGATATCAAACCTCCAAATCTTCCACAA
GATCTGGCCTCCGCTGTTAAAGCTGGAGCTGTTCGAAAGACTACAAATGT
CGTTTGTACGATCAGCAATGATACCGGAGAGGAGCCGACGTACGTGCGCG
TCCCTATCTCTGAGATCATGAGTGATCACACCATCGGCGATGTAATCTCA
TTGCTGTGGTTCAAGACGCTCTTCCCAAAGTGGGCCACCAAGTTCATCGA
ACTTGTTTTGGTCACAGCCGCGGATCACGGACCTTGCGTTTCAGGAGCAC
ACAATACAATCGTCGCCGCACGTGCTGGAAAGGATTTAATAAGTTCGCTT
TGCAGTGGGTTGCTCACTATTGGGCCTCGTTTTGGAGGCGCCGTCGATGC
GGCTGCAATCAACTTTAAAACGGCAAGCGACAACAATATTCCTCCTGACG
AGTTCGTAGAAGCTCTGAAAAAGAAAGGACAGAGAGTTGAGGGAATAGGA
CACCGAATCAAGACAGCAGAGAATCGAGATAAGCGCGTTGAGCTTTTGGC
AAACTATGCCAAACAGCATTTCCCGAGGATGGACACGTTCAATTACGCGA
AAAAGGTGGAGGAGTACACCCTTCAGAAAGCCAACAATTTGGTTCTTAAC
ATTGATGGAGCCATAGGATCTTTGTTCGCGGACATGCTTCGTGGAGTGGG
CAAATACACTGACACCGAGGTAATGGAGGTTCTCGAACTTGGCGGGTTAA
ACGGGCTTTTCACATTAAGTCGAAGCATTGGATTTATCGGTCATGCTCTT
GACCAGAAGCGCATGAAACAACCCTTGTATAGGCATCCTTGGGACGATGT
CCTATATGCCGAACCAGAACGTCCGAGTAGACTGGATGACAGTGATGAAG
CCCTTGAGTAA

Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+

>Gcaud1689.t1 ID=Gcaud1689.t1|Name=Gcaud1689.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1911bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2850..4760+ (Gracilaria caudata M_176_S67 male)
ATGCCTTCACTTTCGCAACCCGGTTCAGCTGCTTCTAAAGCTGGGGCTCT
CTTCTCAAGGGACTCAACTGCAATCTTTTACAACTATAAGCGCAATCCGA
TCCAGCGTATGCTCGATTTCGATTTTATTTGTGCCAGAGCTACTCCATCC
GTTGCGGCAATTGTTTCTCAGGGTGCGGCACCTGGTGGTTTTCAGAAAGC
GTTCTTCGGTAAGGAAGAAGTTGCAATTCCAGTGTATGGATCCACTGAAG
CTGCATGCGCCGCCCACCCGAATTCGGATGTGTTCATCAACTTTGCGTCG
TATCGATCTGCTTACCAGAGTTCGTTCAACGCTCTGACGCAATCTACAAT
CAGAACTATTGCCATAATTGCCGAGGGTGTACCAGAGCGTGATACGAAGA
AGCTGATCGCCTACGCCAACAGAACGGGCAAAGTTATCATTGGCCCAGCC
ACGGTCGGAGGCGTTCAAGCTGGCGCCTTTAAAATCGGTGATACGGCTGG
TACCGTTGAGAATATCATTAACTGCAAGCTTCATCGTCCTGGAAGTGTTG
GCTTTGTTTCAAAGTCTGGCGGATTGTCCAATGAAATGTATAACGTTCTA
GCGAGGGTTACCGATGGTTTATATGAAGGAATCGCAGTTGGCGGTGATGC
CTATGCAGGATCTGGTCTTGCTGACCATGTCCTTCGATTCCAATCATTAC
CACAAGTCAAGCTTATCGTGCTGCTCGGAGAGCTGGGTGGAACCGATGAA
TATGGAGTTGTTGAAGCTTTACAAAGCGGTCGCATTACTAAGCCTGTTGT
CGCGTGGGTTAGTGGAACCTGCGCAAAATGGTTCAATGCTGCTGAGGTGC
AATTCGGACACGCTGGCGCTAAGACTGGAGGGGCAGATGAAAGTGCGGAG
GCGAAAAACGAAGCACTGAGAAAGGCCGGGGCGCACGTACCCGAGAATTT
CGATGGATTTGCAAACATGATCCATAACGTTTACGAAAGAATGGTTGATG
AGGGAGTGCTCGAACCAGCAAAAGATATCAAACCTCCAAATCTTCCACAA
GATCTGGCCTCCGCTGTTAAAGCTGGAGCTGTTCGAAAGACTACAAATGT
CGTTTGTACGATCAGCAATGATACCGGAGAGGAGCCGACGTACGTGCGCG
TCCCTATCTCTGAGATCATGAGTGATCACACCATCGGCGATGTAATCTCA
TTGCTGTGGTTCAAGACGCTCTTCCCAAAGTGGGCCACCAAGTTCATCGA
ACTTGTTTTGGTCACAGCCGCGGATCACGGACCTTGCGTTTCAGGAGCAC
ACAATACAATCGTCGCCGCACGTGCTGGAAAGGATTTAATAAGTTCGCTT
TGCAGTGGGTTGCTCACTATTGGGCCTCGTTTTGGAGGCGCCGTCGATGC
GGCTGCAATCAACTTTAAAACGGCAAGCGACAACAATATTCCTCCTGACG
AGTTCGTAGAAGCTCTGAAAAAGAAAGGACAGAGAGTTGAGGGAATAGGA
CACCGAATCAAGACAGCAGAGAATCGAGATAAGCGCGTTGAGCTTTTGGC
AAACTATGCCAAACAGCATTTCCCGAGGATGGACACGTTCAATTACGCGA
AAAAGGTGGAGGAGTACACCCTTCAGAAAGCCAACAATTTGGTTCTTAAC
ATTGATGGAGCCATAGGATCTTTGTTCGCGGACATGCTTCGTGGAGTGGG
CAAATACACTGACACCGAGGTAATGGAGGTTCTCGAACTTGGCGGGTTAA
ACGGGCTTTTCACATTAAGTCGAAGCATTGGATTTATCGGTCATGCTCTT
GACCAGAAGCGCATGAAACAACCCTTGTATAGGCATCCTTGGGACGATGT
CCTATATGCCGAACCAGAACGTCCGAGTAGACTGGATGACAGTGATGAAG
CCCTTGAGTAA