Gcaud1688.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1688.t1
Unique NameGcaud1688.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length68
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_676_length_19860_cov_4.402802contigNODE_676_length_19860_cov_4.402802:2305..2615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1688Gcaud1688Gracilaria caudata M_176_S67 malegeneNODE_676_length_19860_cov_4.402802 2305..2615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1Gcaud1688.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_676_length_19860_cov_4.402802 2305..2615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1.stop1Gcaud1688.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_676_length_19860_cov_4.402802 2305..2307 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1.CDS1Gcaud1688.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_676_length_19860_cov_4.402802 2305..2329 -
Gcaud1688.t1.CDS2Gcaud1688.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_676_length_19860_cov_4.402802 2437..2615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1.exon1Gcaud1688.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_676_length_19860_cov_4.402802 2305..2329 -
Gcaud1688.t1.exon2Gcaud1688.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_676_length_19860_cov_4.402802 2437..2615 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1.intron1Gcaud1688.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_676_length_19860_cov_4.402802 2330..2436 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1688.t1.start1Gcaud1688.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_676_length_19860_cov_4.402802 2613..2615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1688.t1 ID=Gcaud1688.t1|Name=Gcaud1688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=68bp
MQQFDTLHELRRQIKSIDAARNIALVLTKLQPLPRNGLGSGCSNDSKTST
QSMMQLCIHRKTLSQPF*
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spliced messenger RNA

>Gcaud1688.t1 ID=Gcaud1688.t1|Name=Gcaud1688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=204bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2305..2615- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAATTCGATACCCTTCACGAACTACGAAGGCAAATCAAATCGAT
CGACGCAGCTCGTAACATTGCTCTGGTGCTCACCAAGCTTCAGCCCCTTC
CCAGAAACGGCCTTGGATCAGGTTGCTCCAACGATTCCAAAACCTCGACT
CAATCCATGATGCAATTGTGTATTCACAGGAAGACCTTATCGCAGCCTTT
TTGA
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protein sequence of Gcaud1688.t1

>Gcaud1688.t1 ID=Gcaud1688.t1|Name=Gcaud1688.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=68bp
MQQFDTLHELRRQIKSIDAARNIALVLTKLQPLPRNGLGSGCSNDSKTST
QSMMQLCIHRKTLSQPF*
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mRNA from alignment at NODE_676_length_19860_cov_4.402802:2305..2615-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1688.t1 ID=Gcaud1688.t1|Name=Gcaud1688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=311bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2305..2615- (Gracilaria caudata M_176_S67 male)
ATGCAGCAATTCGATACCCTTCACGAACTACGAAGGCAAATCAAATCGAT
CGACGCAGCTCGTAACATTGCTCTGGTGCTCACCAAGCTTCAGCCCCTTC
CCAGAAACGGCCTTGGATCAGGTTGCTCCAACGATTCCAAAACCTCGACT
CAATCCATGATGCAATTGTGTATTCACAGGTACGTACTGCATAGAGTAGT
TCGAAATTTAGCGTTTTTGGATAGCTGGCGGGCCCGTAAAACCGCATATT
GAAATCTGTATTTTTTAACATCTCTCTCGGTTTTAGGAAGACCTTATCGC
AGCCTTTTTGA
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Coding sequence (CDS) from alignment at NODE_676_length_19860_cov_4.402802:2305..2615-

>Gcaud1688.t1 ID=Gcaud1688.t1|Name=Gcaud1688.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=204bp|location=Sequence derived from alignment at NODE_676_length_19860_cov_4.402802:2305..2615- (Gracilaria caudata M_176_S67 male)
ATGCAGCAATTCGATACCCTTCACGAACTACGAAGGCAAATCAAATCGAT
CGACGCAGCTCGTAACATTGCTCTGGTGCTCACCAAGCTTCAGCCCCTTC
CCAGAAACGGCCTTGGATCAGGTTGCTCCAACGATTCCAAAACCTCGACT
CAATCCATGATGCAATTGTGTATTCACAGGAAGACCTTATCGCAGCCTTT
TTGA
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