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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1173025.GEI7407_0504 |
| Preferred name | clpC |
| PFAMs | AAA,AAA_2,ClpB_D2-small,Clp_N,UVR |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K03696 |
| KEGG Pathway | ko01100,map01100 |
| Evalue | 0.0 |
| EggNOG OGs | COG0542@1|root,COG0542@2|Bacteria,1G0ZH@1117|Cyanobacteria,1H8UC@1150|Oscillatoriales |
| Description | Belongs to the ClpA ClpB family |
| COG category | O |
| BRITE | ko00000,ko03110 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1685.t1.stop1 | Gcaud1685.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_857_length_16974_cov_176.431973 9466..9468 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1685.t1.exon1 | Gcaud1685.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_857_length_16974_cov_176.431973 9466..11934 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1685.t1.start1 | Gcaud1685.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_857_length_16974_cov_176.431973 11932..11934 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=823bp MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEAST NGNNNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV AGTKYRGEFEERLKRIMDEIKSANNIILVIDEVHTLIGAGAAEGAIDAAN LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI EILFGLRDRYEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEA GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME IKAQIAAIAQSKKNEPNLQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES EKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEEL KQYFRPEFLNRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQEIELEV TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV VDVTDEGKVTVLLGEQLEILQP* back to topspliced messenger RNA >Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT AGAAATTTTACAACCTTAA back to topprotein sequence of Gcaud1685.t1 >Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=823bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEAST NGNNNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV AGTKYRGEFEERLKRIMDEIKSANNIILVIDEVHTLIGAGAAEGAIDAAN LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI EILFGLRDRYEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEA GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME IKAQIAAIAQSKKNEPNLQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES EKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEEL KQYFRPEFLNRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQEIELEV TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV VDVTDEGKVTVLLGEQLEILQP* back to topmRNA from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male) ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT
TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA
TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT
TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG
CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT
AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA
AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA
TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA
AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG
TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG
AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC
AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT
CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT
GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT
GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC
ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC
TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC
AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT
GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA
AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA
TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT
GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA
ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA
GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA
ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA
TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG
TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT
GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG
GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG
ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT
TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA
GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT
AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT
TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT
TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA
ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA
AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC
AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG
AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT
GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC
TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA
ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA
TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC
TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT
GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT
AGAAATTTTACAACCTTAA back to topCoding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- >Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male) ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT AGAAATTTTACAACCTTAA back to top
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