Gcaud1685.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1685.t1
Unique NameGcaud1685.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length823
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_857_length_16974_cov_176.431973contigNODE_857_length_16974_cov_176.431973:9466..11934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_0504
Preferred nameclpC
PFAMsAAA,AAA_2,ClpB_D2-small,Clp_N,UVR
Max annot lvl1117|Cyanobacteria
KEGG koko:K03696
KEGG Pathwayko01100,map01100
Evalue0.0
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,1G0ZH@1117|Cyanobacteria,1H8UC@1150|Oscillatoriales
DescriptionBelongs to the ClpA ClpB family
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1685Gcaud1685Gracilaria caudata M_176_S67 malegeneNODE_857_length_16974_cov_176.431973 9466..11934 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1685.t1.stop1Gcaud1685.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_857_length_16974_cov_176.431973 9466..9468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1685.t1.CDS1Gcaud1685.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_857_length_16974_cov_176.431973 9466..11934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1685.t1.exon1Gcaud1685.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_857_length_16974_cov_176.431973 9466..11934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1685.t1.start1Gcaud1685.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_857_length_16974_cov_176.431973 11932..11934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1685.t1Gcaud1685.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_857_length_16974_cov_176.431973 9466..11934 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=823bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEAST
NGNNNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV
AGTKYRGEFEERLKRIMDEIKSANNIILVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME
IKAQIAAIAQSKKNEPNLQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEEL
KQYFRPEFLNRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQEIELEV
TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV
VDVTDEGKVTVLLGEQLEILQP*
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spliced messenger RNA

>Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT
TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA
TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT
TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG
CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT
AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA
AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA
TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA
AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG
TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG
AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC
AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT
CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT
GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT
GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC
ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC
TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC
AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT
GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA
AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA
TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT
GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA
ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA
GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA
ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA
TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG
TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT
GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG
GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG
ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT
TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA
GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT
AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT
TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT
TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA
ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA
AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC
AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG
AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT
GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC
TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA
ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA
TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC
TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT
GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT
AGAAATTTTACAACCTTAA
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protein sequence of Gcaud1685.t1

>Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=823bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLAVNVASIRTEVIQMLGDNTEAST
NGNNNTQTRSKTPTLEEFGSNLTELAIEGILDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRIANKDIPSILEDKLVVTLDVGLLV
AGTKYRGEFEERLKRIMDEIKSANNIILVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDAALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDKELRNVLKTKDEAIRAQKYEKAEQYRTREME
IKAQIAAIAQSKKNEPNLQIEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGSQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQTESQYNRIRSLVNEEL
KQYFRPEFLNRLDEIIVFRQLTKDEVREIAEIMLQEVFERIKQQEIELEV
TERFKNRLVDEGYNPSYGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAV
VDVTDEGKVTVLLGEQLEILQP*
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mRNA from alignment at NODE_857_length_16974_cov_176.431973:9466..11934-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male)
ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT AGAAATTTTACAACCTTAA
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Coding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:9466..11934-

>Gcaud1685.t1 ID=Gcaud1685.t1|Name=Gcaud1685.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2469bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:9466..11934- (Gracilaria caudata M_176_S67 male)
ATGTTTGAACGCTTTACGGAAAAAGCAATAAAAGTTATCATGCTTGCTCA
AGAAGAAGCTAGACGCTTAGGACATAATTTTGTTGGTACAGAACAAATTT
TACTAGGTTTAATAGGTGAAGGTACAGGAATTGCTGCACAAGTATTAAAA
TCTATGAATGTAAATTTAAAAGATGCACGCATAGAAGTTGAAAAAATCAT
TGGCAGAGGATCAGGATTTGTCGCAGTTGAAATTCCCTTTACTCCAAGAG
CAAAAAGAGTTCTAGAATTATCTCTAGAAGAGGCTAGACAGCTAGGACAT
AATTATATAGGAACAGAACATCTGTTAATGGGTTTAGTGCGCGAAGGCGA
AGGTGTAGCTGCACGAGTACTCGAAAATTTAGCCGTTAATGTAGCATCTA
TTAGAACAGAAGTCATTCAAATGTTGGGTGACAATACAGAAGCGAGCACA
AATGGAAACAATAATACACAAACCAGAAGCAAAACTCCTACACTAGAAGA
ATTTGGATCAAACCTTACAGAATTAGCTATAGAAGGTATCTTAGATCCTG
TAGTTGGAAGACAAAAAGAGATTGAAAGAGTAATACAAATATTAGGGAGG
AGAACAAAAAATAATCCTGTACTAATTGGAGAGCCTGGAGTAGGAAAAAC
AGCTATAGCAGAAGGTTTAGCACAAAGAATTGCCAATAAAGATATACCTT
CTATCTTAGAAGATAAACTGGTTGTAACATTAGATGTTGGTTTATTAGTT
GCTGGCACAAAATACAGAGGAGAATTCGAAGAAAGACTTAAAAGAATTAT
GGACGAAATAAAATCAGCCAATAATATTATACTAGTCATCGACGAAGTAC
ATACTCTAATTGGAGCTGGAGCAGCTGAAGGAGCCATCGACGCAGCAAAC
TTACTGAAACCAGCATTAGCTAGAGGAGAGTTACAATGCATAGGAGCAAC
AACATTAGAAGAATATCGTAAACATATAGAAAAAGATGCAGCACTTGAAA
GAAGATTCCAACCTGTATTAGTTGGAGAGCCAAGCGTAGAAGAAACCATT
GAAATTTTATTTGGTTTAAGAGACAGATATGAAAAACACCACCAGTTAAA
AATGTCAGATGCTGCTTTAGCTGCTGCAGCTAAATATGCAAATCAGTATA
TTTCTGACCGTTTTTTGCCCGACAAAGCTATTGACTTAATTGATGAAGCT
GGTTCAAGAGTTAGGTTATTAAATTCTCAATTACCTCCAGCAGCCAGAGA
ATTAGATAAAGAGCTAAGAAATGTCTTGAAAACAAAAGATGAAGCAATCA
GAGCACAAAAATATGAAAAGGCAGAACAATATAGAACAAGAGAAATGGAA
ATTAAAGCTCAAATTGCTGCTATTGCACAAAGTAAAAAGAATGAGCCTAA
TTTACAAATTGAAGATCCTGTAGTAACAGAAGACGATATTGCAGAAATAG
TTGCATTTTGGACAGGTATTCCAGTTACAAAATTAACTAAAAGCGAATCT
GAAAAATTAATGCACATGGAAGAAACACTACATGGTCGTATCATTGGACA
AGATGAAGCTGTAGTAGCTGTTTCTAGAGCTATCAGAAGAGCAAGAGTTG
GATTAAAAAATCCTAACAGACCCATTGCAAGTTTTATATTTTCTGGGCCG
ACAGGAGTTGGTAAAACTGAATTAACTAAAGCATTAGCTTCTTATTTTTT
TGGTTCACAGGAGGCAATGGTCAGACTGGACATGTCTGAATACATGGAAA
GACATACTGTATCTAAATTAATCGGCTCACCACCTGGGTATGTAGGCTAT
AGTGAAGGTGGTTATTTAACAGAAGCTGTTAGAAAACGTCCTTACACTGT
TATTCTATTTGATGAAATTGAGAAAGCACATCCAGATATTTTCAATCTTT
TATTACAAATCCTAGAAGATGGTAGACTAACTGATGCTAAAGGTAGAACA
ATAGATTTTAAAAATACTTTACTAATTATGACATCTAATATAGGTTCAAA
AGTTATAGAAAAAGGAGGAGGAAGCTTAGGATTTGAACTTGGAGAGTCAC
AAACAGAATCACAATATAACCGTATAAGATCACTGGTTAATGAAGAGTTG
AAACAATATTTTCGTCCTGAATTCTTAAATAGACTAGATGAAATCATAGT
GTTTAGACAGCTAACTAAAGATGAAGTTCGTGAAATAGCAGAAATTATGC
TACAAGAAGTATTTGAACGCATTAAACAACAAGAAATAGAACTAGAAGTA
ACTGAAAGATTCAAGAATAGATTGGTAGATGAAGGATACAACCCTAGTTA
TGGAGCAAGACCACTACGCAGAGCAGTAATGAGACTATTAGAAGACAGCC
TAGCAGAAGAAGTTTTATCAGGTAAAATTAAAGCTGGTGATAGTGCAGTT
GTAGATGTAACAGATGAAGGAAAAGTAACCGTATTATTGGGTGAACAACT
AGAAATTTTACAACCTTAA
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