Gcaud1684.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1684.t1
Unique NameGcaud1684.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length599
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_857_length_16974_cov_176.431973contigNODE_857_length_16974_cov_176.431973:4385..6181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704999.1
Preferred nameILV2
PFAMsTPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00027,RC00106,RC01192,RC02744,RC02893
KEGG koko:K01652
KEGG ReactionR00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG Pathwayko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00019,M00570
GOsGO:0000166,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234
Evalue1.35e-293
EggNOG OGsCOG0028@1|root,KOG4166@2759|Eukaryota
EC2.2.1.6
Descriptionacetolactate synthase activity
COG categoryEH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1684Gcaud1684Gracilaria caudata M_176_S67 malegeneNODE_857_length_16974_cov_176.431973 4385..6181 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1684.t1.start1Gcaud1684.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_857_length_16974_cov_176.431973 4385..4387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1684.t1.CDS1Gcaud1684.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_857_length_16974_cov_176.431973 4385..6181 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1684.t1.exon1Gcaud1684.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_857_length_16974_cov_176.431973 4385..6181 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1684.t1.stop1Gcaud1684.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_857_length_16974_cov_176.431973 6179..6181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1684.t1Gcaud1684.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_857_length_16974_cov_176.431973 4385..6181 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1684.t1 ID=Gcaud1684.t1|Name=Gcaud1684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=599bp
MNIDYDSDLKLKEVTGAFALMDSLVNNNVKYVFGYPGGAILPIYDELYKW
ENQGLIKHILCRHEQGASHAADGYARSTGQVGVCFATSGPGATNLVSGIA
TAQLDSIPLVLITGQVARPFIGTDAFQEVDIFGITLPIVKHSYVVRDPRD
MSRIVSEAFYIAQHGRPGPVLIDVPKDVGLEKFSYEPLNPSDVKLLGCRP
IMKAKDSQIAKILNLLYESSQPLLYVGGGSIISGAHQVIKEFSYRFQIPI
CTTLMGKGIIDENDSLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRV
TGKLDEFACNAKVIHVDIDPAEIGKNRVPQVAVLGDVKEVISRILDYLDS
NSNLVFNSEQTCSWKNRISMWKNQYPLLIPKHVSNLSPQEVIFSLSRIQP
NAYFTTDVGQHQMWAAQFVNVLPRHWMSSSGLGTMGYGLPAAIGVQVAYP
SESVICITGDASFQMNFQELATIVQYNLPIKIIIINNKWQGMVRQWQQAF
YGERYSHSNMEKGAPDFVLLAQSFGILGLCLEYRHDMNKILDRFISHNGP
CLLNCKVKEEENCYPMVAPGKSNSQMIGISKLVKNKGTSLTKLRVDSL*
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spliced messenger RNA

>Gcaud1684.t1 ID=Gcaud1684.t1|Name=Gcaud1684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:4385..6181+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATATAGATTATGATTCTGATTTAAAACTAAAAGAAGTTACAGGTGC
ATTTGCTCTTATGGATAGTTTAGTTAATAACAATGTAAAATATGTTTTTG
GCTATCCTGGTGGTGCTATTTTACCTATTTATGATGAATTATATAAATGG
GAAAATCAAGGTTTAATTAAACATATTTTATGCCGTCATGAGCAAGGTGC
ATCTCATGCTGCTGATGGTTATGCTAGATCCACGGGACAAGTTGGTGTTT
GCTTTGCAACGTCTGGTCCAGGAGCTACTAATCTTGTTTCTGGTATTGCC
ACAGCACAATTAGATTCTATACCTTTAGTTCTTATAACCGGCCAAGTAGC
ACGGCCTTTTATAGGTACAGATGCTTTTCAGGAAGTTGATATCTTTGGTA
TTACTTTGCCTATAGTTAAGCATTCTTATGTTGTTAGAGATCCTAGAGAT
ATGTCTCGAATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACC
GGGACCTGTCTTAATTGATGTACCTAAAGATGTTGGTTTAGAGAAATTTT
CTTATGAACCTCTTAATCCTAGTGATGTTAAGTTATTAGGTTGTCGTCCA
ATCATGAAAGCTAAGGATAGTCAAATTGCTAAAATTTTAAATCTTTTATA
TGAGTCCAGTCAGCCTTTACTTTATGTTGGAGGTGGTTCTATTATTTCTG
GTGCACATCAAGTAATTAAGGAATTTTCCTATCGTTTTCAAATACCAATA
TGTACTACATTAATGGGGAAAGGAATTATTGACGAAAATGATAGTTTATG
TTTGGGTATGCTAGGTATGCATGGTACTGCTTATGCTAATTTTGCTGTCA
GTGAATGTGATTTATTGATTGCTCTTGGCGCACGATTTGATGATAGGGTT
ACAGGTAAATTAGATGAATTTGCATGTAATGCTAAAGTTATACATGTTGA
TATTGATCCTGCTGAAATAGGTAAGAATCGTGTTCCTCAAGTCGCTGTTT
TAGGTGATGTTAAAGAGGTTATAAGTCGTATTTTGGATTATTTGGATAGT
AATTCAAATTTAGTATTTAATTCTGAACAAACTTGTTCTTGGAAAAATAG
AATATCTATGTGGAAAAATCAGTATCCTTTATTAATTCCAAAGCACGTTA
GTAATTTATCTCCTCAAGAAGTTATTTTTTCTTTGTCTCGTATTCAACCA
AATGCTTATTTTACCACTGATGTTGGTCAACATCAAATGTGGGCGGCTCA
ATTTGTAAATGTATTGCCACGACATTGGATGTCTAGTTCTGGTTTAGGTA
CTATGGGTTATGGACTTCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCT
TCTGAAAGTGTTATATGTATCACTGGAGATGCTAGTTTTCAAATGAATTT
TCAAGAGCTTGCTACAATTGTTCAATACAATTTGCCTATAAAAATTATTA
TTATAAATAATAAATGGCAGGGTATGGTTAGACAGTGGCAGCAGGCTTTT
TATGGGGAGAGATATTCTCATTCCAATATGGAAAAAGGCGCTCCTGATTT
TGTTTTATTAGCTCAGTCTTTTGGTATTTTGGGTTTATGTTTAGAATATA
GACATGATATGAATAAAATTTTAGATCGTTTCATTAGTCATAATGGGCCA
TGTTTATTAAATTGTAAAGTTAAAGAAGAAGAGAATTGTTATCCTATGGT
AGCGCCTGGTAAAAGTAATTCACAAATGATAGGTATATCTAAATTAGTAA
AAAATAAAGGTACATCGTTAACCAAGTTAAGAGTTGATAGCCTTTAA
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protein sequence of Gcaud1684.t1

>Gcaud1684.t1 ID=Gcaud1684.t1|Name=Gcaud1684.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=599bp
MNIDYDSDLKLKEVTGAFALMDSLVNNNVKYVFGYPGGAILPIYDELYKW
ENQGLIKHILCRHEQGASHAADGYARSTGQVGVCFATSGPGATNLVSGIA
TAQLDSIPLVLITGQVARPFIGTDAFQEVDIFGITLPIVKHSYVVRDPRD
MSRIVSEAFYIAQHGRPGPVLIDVPKDVGLEKFSYEPLNPSDVKLLGCRP
IMKAKDSQIAKILNLLYESSQPLLYVGGGSIISGAHQVIKEFSYRFQIPI
CTTLMGKGIIDENDSLCLGMLGMHGTAYANFAVSECDLLIALGARFDDRV
TGKLDEFACNAKVIHVDIDPAEIGKNRVPQVAVLGDVKEVISRILDYLDS
NSNLVFNSEQTCSWKNRISMWKNQYPLLIPKHVSNLSPQEVIFSLSRIQP
NAYFTTDVGQHQMWAAQFVNVLPRHWMSSSGLGTMGYGLPAAIGVQVAYP
SESVICITGDASFQMNFQELATIVQYNLPIKIIIINNKWQGMVRQWQQAF
YGERYSHSNMEKGAPDFVLLAQSFGILGLCLEYRHDMNKILDRFISHNGP
CLLNCKVKEEENCYPMVAPGKSNSQMIGISKLVKNKGTSLTKLRVDSL*
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mRNA from alignment at NODE_857_length_16974_cov_176.431973:4385..6181+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1684.t1 ID=Gcaud1684.t1|Name=Gcaud1684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1797bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:4385..6181+ (Gracilaria caudata M_176_S67 male)
ATGAATATAGATTATGATTCTGATTTAAAACTAAAAGAAGTTACAGGTGC
ATTTGCTCTTATGGATAGTTTAGTTAATAACAATGTAAAATATGTTTTTG
GCTATCCTGGTGGTGCTATTTTACCTATTTATGATGAATTATATAAATGG
GAAAATCAAGGTTTAATTAAACATATTTTATGCCGTCATGAGCAAGGTGC
ATCTCATGCTGCTGATGGTTATGCTAGATCCACGGGACAAGTTGGTGTTT
GCTTTGCAACGTCTGGTCCAGGAGCTACTAATCTTGTTTCTGGTATTGCC
ACAGCACAATTAGATTCTATACCTTTAGTTCTTATAACCGGCCAAGTAGC
ACGGCCTTTTATAGGTACAGATGCTTTTCAGGAAGTTGATATCTTTGGTA
TTACTTTGCCTATAGTTAAGCATTCTTATGTTGTTAGAGATCCTAGAGAT
ATGTCTCGAATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACC
GGGACCTGTCTTAATTGATGTACCTAAAGATGTTGGTTTAGAGAAATTTT
CTTATGAACCTCTTAATCCTAGTGATGTTAAGTTATTAGGTTGTCGTCCA
ATCATGAAAGCTAAGGATAGTCAAATTGCTAAAATTTTAAATCTTTTATA
TGAGTCCAGTCAGCCTTTACTTTATGTTGGAGGTGGTTCTATTATTTCTG
GTGCACATCAAGTAATTAAGGAATTTTCCTATCGTTTTCAAATACCAATA
TGTACTACATTAATGGGGAAAGGAATTATTGACGAAAATGATAGTTTATG
TTTGGGTATGCTAGGTATGCATGGTACTGCTTATGCTAATTTTGCTGTCA
GTGAATGTGATTTATTGATTGCTCTTGGCGCACGATTTGATGATAGGGTT
ACAGGTAAATTAGATGAATTTGCATGTAATGCTAAAGTTATACATGTTGA
TATTGATCCTGCTGAAATAGGTAAGAATCGTGTTCCTCAAGTCGCTGTTT
TAGGTGATGTTAAAGAGGTTATAAGTCGTATTTTGGATTATTTGGATAGT
AATTCAAATTTAGTATTTAATTCTGAACAAACTTGTTCTTGGAAAAATAG
AATATCTATGTGGAAAAATCAGTATCCTTTATTAATTCCAAAGCACGTTA
GTAATTTATCTCCTCAAGAAGTTATTTTTTCTTTGTCTCGTATTCAACCA
AATGCTTATTTTACCACTGATGTTGGTCAACATCAAATGTGGGCGGCTCA
ATTTGTAAATGTATTGCCACGACATTGGATGTCTAGTTCTGGTTTAGGTA
CTATGGGTTATGGACTTCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCT
TCTGAAAGTGTTATATGTATCACTGGAGATGCTAGTTTTCAAATGAATTT
TCAAGAGCTTGCTACAATTGTTCAATACAATTTGCCTATAAAAATTATTA
TTATAAATAATAAATGGCAGGGTATGGTTAGACAGTGGCAGCAGGCTTTT
TATGGGGAGAGATATTCTCATTCCAATATGGAAAAAGGCGCTCCTGATTT
TGTTTTATTAGCTCAGTCTTTTGGTATTTTGGGTTTATGTTTAGAATATA
GACATGATATGAATAAAATTTTAGATCGTTTCATTAGTCATAATGGGCCA
TGTTTATTAAATTGTAAAGTTAAAGAAGAAGAGAATTGTTATCCTATGGT
AGCGCCTGGTAAAAGTAATTCACAAATGATAGGTATATCTAAATTAGTAA
AAAATAAAGGTACATCGTTAACCAAGTTAAGAGTTGATAGCCTTTAA
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Coding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:4385..6181+

>Gcaud1684.t1 ID=Gcaud1684.t1|Name=Gcaud1684.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1797bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:4385..6181+ (Gracilaria caudata M_176_S67 male)
ATGAATATAGATTATGATTCTGATTTAAAACTAAAAGAAGTTACAGGTGC
ATTTGCTCTTATGGATAGTTTAGTTAATAACAATGTAAAATATGTTTTTG
GCTATCCTGGTGGTGCTATTTTACCTATTTATGATGAATTATATAAATGG
GAAAATCAAGGTTTAATTAAACATATTTTATGCCGTCATGAGCAAGGTGC
ATCTCATGCTGCTGATGGTTATGCTAGATCCACGGGACAAGTTGGTGTTT
GCTTTGCAACGTCTGGTCCAGGAGCTACTAATCTTGTTTCTGGTATTGCC
ACAGCACAATTAGATTCTATACCTTTAGTTCTTATAACCGGCCAAGTAGC
ACGGCCTTTTATAGGTACAGATGCTTTTCAGGAAGTTGATATCTTTGGTA
TTACTTTGCCTATAGTTAAGCATTCTTATGTTGTTAGAGATCCTAGAGAT
ATGTCTCGAATAGTTTCTGAAGCTTTTTATATTGCTCAACATGGAAGACC
GGGACCTGTCTTAATTGATGTACCTAAAGATGTTGGTTTAGAGAAATTTT
CTTATGAACCTCTTAATCCTAGTGATGTTAAGTTATTAGGTTGTCGTCCA
ATCATGAAAGCTAAGGATAGTCAAATTGCTAAAATTTTAAATCTTTTATA
TGAGTCCAGTCAGCCTTTACTTTATGTTGGAGGTGGTTCTATTATTTCTG
GTGCACATCAAGTAATTAAGGAATTTTCCTATCGTTTTCAAATACCAATA
TGTACTACATTAATGGGGAAAGGAATTATTGACGAAAATGATAGTTTATG
TTTGGGTATGCTAGGTATGCATGGTACTGCTTATGCTAATTTTGCTGTCA
GTGAATGTGATTTATTGATTGCTCTTGGCGCACGATTTGATGATAGGGTT
ACAGGTAAATTAGATGAATTTGCATGTAATGCTAAAGTTATACATGTTGA
TATTGATCCTGCTGAAATAGGTAAGAATCGTGTTCCTCAAGTCGCTGTTT
TAGGTGATGTTAAAGAGGTTATAAGTCGTATTTTGGATTATTTGGATAGT
AATTCAAATTTAGTATTTAATTCTGAACAAACTTGTTCTTGGAAAAATAG
AATATCTATGTGGAAAAATCAGTATCCTTTATTAATTCCAAAGCACGTTA
GTAATTTATCTCCTCAAGAAGTTATTTTTTCTTTGTCTCGTATTCAACCA
AATGCTTATTTTACCACTGATGTTGGTCAACATCAAATGTGGGCGGCTCA
ATTTGTAAATGTATTGCCACGACATTGGATGTCTAGTTCTGGTTTAGGTA
CTATGGGTTATGGACTTCCTGCTGCTATAGGTGTTCAAGTAGCTTATCCT
TCTGAAAGTGTTATATGTATCACTGGAGATGCTAGTTTTCAAATGAATTT
TCAAGAGCTTGCTACAATTGTTCAATACAATTTGCCTATAAAAATTATTA
TTATAAATAATAAATGGCAGGGTATGGTTAGACAGTGGCAGCAGGCTTTT
TATGGGGAGAGATATTCTCATTCCAATATGGAAAAAGGCGCTCCTGATTT
TGTTTTATTAGCTCAGTCTTTTGGTATTTTGGGTTTATGTTTAGAATATA
GACATGATATGAATAAAATTTTAGATCGTTTCATTAGTCATAATGGGCCA
TGTTTATTAAATTGTAAAGTTAAAGAAGAAGAGAATTGTTATCCTATGGT
AGCGCCTGGTAAAAGTAATTCACAAATGATAGGTATATCTAAATTAGTAA
AAAATAAAGGTACATCGTTAACCAAGTTAAGAGTTGATAGCCTTTAA
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