Gcaud1683.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1683.t1
Unique NameGcaud1683.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_857_length_16974_cov_176.431973contigNODE_857_length_16974_cov_176.431973:2963..3622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173029.JH980292_gene2267
Preferred nameargB
PFAMsAA_kinase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002,RC00043
KEGG koko:K00930
KEGG ReactionR02649
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
GOsGO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.03e-77
EggNOG OGsCOG0548@1|root,COG0548@2|Bacteria,1G0R4@1117|Cyanobacteria,1H7RD@1150|Oscillatoriales
EC2.7.2.8
DescriptionBelongs to the acetylglutamate kinase family. ArgB subfamily
COG categoryE
BiGG ReactioniJN678.argB
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1683Gcaud1683Gracilaria caudata M_176_S67 malegeneNODE_857_length_16974_cov_176.431973 2963..3622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1683.t1.stop1Gcaud1683.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_857_length_16974_cov_176.431973 2963..2965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1683.t1.CDS1Gcaud1683.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_857_length_16974_cov_176.431973 2963..3622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1683.t1.exon1Gcaud1683.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_857_length_16974_cov_176.431973 2963..3622 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1683.t1.start1Gcaud1683.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_857_length_16974_cov_176.431973 3620..3622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1683.t1Gcaud1683.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_857_length_16974_cov_176.431973 2963..3622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1683.t1 ID=Gcaud1683.t1|Name=Gcaud1683.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=220bp
MINYWLKQMNIEPKFFNGIRVTDKDTMELVEMVLVGKVNKDLVSLLNCSS
NIAVGLSGKDANLVTASSFFSDQPDNYTGKVQAINLEIIDLLLSSGYIPV
IASVASGLNGQTYNINADSVAGAIAESLNAEKLILLTDTPGIMLNINDSS
TLIKNLNIKQLEDLKNQNIILGGMIPKVDCCVKALKKNVGAAHIINGSIK
HALLLEILTSDGIGSKLVA*
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spliced messenger RNA

>Gcaud1683.t1 ID=Gcaud1683.t1|Name=Gcaud1683.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:2963..3622- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTAATTATTGGTTAAAACAAATGAACATAGAGCCTAAATTCTTTAA
TGGTATTCGTGTGACTGATAAAGATACTATGGAGTTAGTAGAAATGGTTT
TAGTGGGTAAAGTTAATAAGGATTTAGTCTCTTTACTAAATTGTTCATCT
AATATAGCTGTTGGTTTATCAGGTAAGGATGCCAATTTAGTTACTGCATC
TAGTTTTTTTTCCGATCAACCCGATAATTATACTGGTAAAGTGCAAGCAA
TTAATCTTGAGATTATTGATCTTTTACTTTCTAGTGGGTATATTCCTGTT
ATTGCTAGTGTTGCTTCAGGTTTGAACGGACAGACTTATAATATTAATGC
AGATTCTGTAGCTGGTGCGATTGCGGAGTCACTTAATGCTGAGAAACTTA
TTTTATTAACGGATACACCCGGTATTATGTTAAATATCAATGATTCATCA
ACTTTAATTAAGAATCTAAATATAAAACAGTTGGAAGATTTAAAAAATCA
AAATATAATTTTAGGTGGTATGATACCTAAGGTTGATTGTTGTGTTAAGG
CTTTGAAAAAAAATGTAGGTGCAGCTCATATTATTAATGGTAGTATAAAG
CATGCTTTGTTATTAGAAATTTTAACATCAGATGGTATAGGCTCTAAGTT
AGTAGCGTAA
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protein sequence of Gcaud1683.t1

>Gcaud1683.t1 ID=Gcaud1683.t1|Name=Gcaud1683.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=220bp
MINYWLKQMNIEPKFFNGIRVTDKDTMELVEMVLVGKVNKDLVSLLNCSS
NIAVGLSGKDANLVTASSFFSDQPDNYTGKVQAINLEIIDLLLSSGYIPV
IASVASGLNGQTYNINADSVAGAIAESLNAEKLILLTDTPGIMLNINDSS
TLIKNLNIKQLEDLKNQNIILGGMIPKVDCCVKALKKNVGAAHIINGSIK
HALLLEILTSDGIGSKLVA*
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mRNA from alignment at NODE_857_length_16974_cov_176.431973:2963..3622-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1683.t1 ID=Gcaud1683.t1|Name=Gcaud1683.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=660bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:2963..3622- (Gracilaria caudata M_176_S67 male)
ATGATTAATTATTGGTTAAAACAAATGAACATAGAGCCTAAATTCTTTAA
TGGTATTCGTGTGACTGATAAAGATACTATGGAGTTAGTAGAAATGGTTT
TAGTGGGTAAAGTTAATAAGGATTTAGTCTCTTTACTAAATTGTTCATCT
AATATAGCTGTTGGTTTATCAGGTAAGGATGCCAATTTAGTTACTGCATC
TAGTTTTTTTTCCGATCAACCCGATAATTATACTGGTAAAGTGCAAGCAA
TTAATCTTGAGATTATTGATCTTTTACTTTCTAGTGGGTATATTCCTGTT
ATTGCTAGTGTTGCTTCAGGTTTGAACGGACAGACTTATAATATTAATGC
AGATTCTGTAGCTGGTGCGATTGCGGAGTCACTTAATGCTGAGAAACTTA
TTTTATTAACGGATACACCCGGTATTATGTTAAATATCAATGATTCATCA
ACTTTAATTAAGAATCTAAATATAAAACAGTTGGAAGATTTAAAAAATCA
AAATATAATTTTAGGTGGTATGATACCTAAGGTTGATTGTTGTGTTAAGG
CTTTGAAAAAAAATGTAGGTGCAGCTCATATTATTAATGGTAGTATAAAG
CATGCTTTGTTATTAGAAATTTTAACATCAGATGGTATAGGCTCTAAGTT
AGTAGCGTAA
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Coding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:2963..3622-

>Gcaud1683.t1 ID=Gcaud1683.t1|Name=Gcaud1683.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=660bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:2963..3622- (Gracilaria caudata M_176_S67 male)
ATGATTAATTATTGGTTAAAACAAATGAACATAGAGCCTAAATTCTTTAA
TGGTATTCGTGTGACTGATAAAGATACTATGGAGTTAGTAGAAATGGTTT
TAGTGGGTAAAGTTAATAAGGATTTAGTCTCTTTACTAAATTGTTCATCT
AATATAGCTGTTGGTTTATCAGGTAAGGATGCCAATTTAGTTACTGCATC
TAGTTTTTTTTCCGATCAACCCGATAATTATACTGGTAAAGTGCAAGCAA
TTAATCTTGAGATTATTGATCTTTTACTTTCTAGTGGGTATATTCCTGTT
ATTGCTAGTGTTGCTTCAGGTTTGAACGGACAGACTTATAATATTAATGC
AGATTCTGTAGCTGGTGCGATTGCGGAGTCACTTAATGCTGAGAAACTTA
TTTTATTAACGGATACACCCGGTATTATGTTAAATATCAATGATTCATCA
ACTTTAATTAAGAATCTAAATATAAAACAGTTGGAAGATTTAAAAAATCA
AAATATAATTTTAGGTGGTATGATACCTAAGGTTGATTGTTGTGTTAAGG
CTTTGAAAAAAAATGTAGGTGCAGCTCATATTATTAATGGTAGTATAAAG
CATGCTTTGTTATTAGAAATTTTAACATCAGATGGTATAGGCTCTAAGTT
AGTAGCGTAA
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