Gcaud1682.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1682.t1
Unique Name	Gcaud1682.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_857_length_16974_cov_176.431973	contig	NODE_857_length_16974_cov_176.431973:1126..2517 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35738
Preferred name	ftsH
PFAMs	AAA,FtsH_ext,Peptidase_M41
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03798
KEGG Module	M00742
GOs	GO:0003674,GO:0003824,GO:0004176,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009725,GO:0009735,GO:0009765,GO:0009892,GO:0009941,GO:0009987,GO:0010027,GO:0010033,GO:0010109,GO:0010205,GO:0010206,GO:0010304,GO:0015979,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0019684,GO:0022607,GO:0030091,GO:0030163,GO:0031323,GO:0031324,GO:0031967,GO:0031975,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0034622,GO:0042221,GO:0042548,GO:0042623,GO:0042651,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048564,GO:0050789,GO:0050794,GO:0050896,GO:0055035,GO:0061024,GO:0065003,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0072593,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1905156
Evalue	1.93e-277
EggNOG OGs	COG0465@1\|root,KOG0731@2759\|Eukaryota
Description	metalloendopeptidase activity
COG category	O
BRITE	ko00000,ko00002,ko01000,ko01002,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1682	Gcaud1682	Gracilaria caudata M_176_S67 male	gene	NODE_857_length_16974_cov_176.431973 1126..2517 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1682.t1.start1	Gcaud1682.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_857_length_16974_cov_176.431973 1126..1128 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1682.t1.CDS1	Gcaud1682.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_857_length_16974_cov_176.431973 1126..2517 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1682.t1.exon1	Gcaud1682.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_857_length_16974_cov_176.431973 1126..2517 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1682.t1.stop1	Gcaud1682.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_857_length_16974_cov_176.431973 2515..2517 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1682.t1	Gcaud1682.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_857_length_16974_cov_176.431973 1126..2517 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+
coding sequence from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+

mRNA sequence

>Gcaud1682.t1 ID=Gcaud1682.t1|Name=Gcaud1682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=464bp
MEAKTGVVFNDVAGIDEAKEEFEEVVTFLKKPERFTAVGAKIPKGVLLIG
PPGTGKTLLAKAIAGEANVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE
NAPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI
VIAATNRADILDSALLRPGRFDRQVSVEIPDFKGRLEILKVHAKNKKMEP
SISLSMIARRTPGFSGADLANLLNEAAILTARRRKKYITLNEIDASIDRI
VAGMEGTALIDSKSKRLIAYHEIGHAIVGTLLKDHDPVQKVTLIPRGQAK
GLTWFTPGEDQNLISRSQILSRIMGALGGRAAEDVVFGDTEVTTGASNDL
QQVTSMARQMVTRFGMSNIGPLCLESEEANPFLGRSMGSGSEYSDEIAIK
IDKQIHDIVEKCYQETVQIIQDNRIVIDRLVDLLIEKETIQGEEFREIIN
EYTPVPQKELYVT*

spliced messenger RNA

>Gcaud1682.t1 ID=Gcaud1682.t1|Name=Gcaud1682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTAAAACAGGTGTAGTATTCAATGATGTCGCAGGAATTGATGA
GGCCAAAGAAGAATTTGAAGAAGTGGTTACATTCTTAAAAAAACCCGAAA
GATTCACTGCTGTAGGAGCAAAGATACCTAAAGGTGTTCTATTAATAGGT
CCTCCTGGAACAGGAAAGACATTATTAGCTAAGGCAATTGCAGGAGAAGC
CAATGTACCTTTTTTTAGTATTTCGGGATCTGAATTTGTAGAAATGTTTG
TGGGCGTAGGTGCTTCACGTGTCAGAGATCTGTTTAAAAAAGCAAAAGAA
AATGCTCCATGTATCGTATTCATAGATGAAATAGATGCAGTTGGCAGACA
AAGAGGAACAGGAATTGGTGGTGGTAATGACGAACGAGAACAAACACTAA
ATCAATTATTAACTGAAATGGATGGTTTTGAAGGAAACACAGGAGTTATA
GTAATTGCAGCAACCAACCGAGCTGATATACTCGATTCTGCTTTATTAAG
ACCTGGTCGTTTTGATCGTCAAGTATCTGTAGAAATACCAGATTTTAAAG
GAAGACTGGAAATACTAAAAGTACATGCTAAGAATAAAAAAATGGAACCC
AGTATATCTTTATCAATGATAGCTAGAAGAACTCCAGGCTTTTCGGGAGC
AGATTTAGCAAATTTATTAAATGAAGCAGCTATACTCACAGCTAGACGGA
GAAAAAAATATATTACATTAAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCAGGTATGGAAGGAACAGCACTAATTGATAGCAAAAGCAAACGTTT
AATTGCATACCACGAGATTGGACATGCAATAGTTGGAACACTTCTTAAAG
ATCATGATCCAGTACAAAAAGTAACCTTGATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACACCAGGAGAAGACCAAAATTTAATATCCAGATC
TCAAATTTTATCACGTATAATGGGAGCATTAGGTGGTAGAGCTGCAGAAG
ATGTTGTATTTGGAGATACAGAGGTTACTACTGGAGCTAGTAATGATTTA
CAACAAGTAACATCTATGGCTCGTCAAATGGTCACACGATTTGGCATGTC
AAATATAGGTCCATTATGCTTAGAAAGTGAAGAAGCAAACCCATTCCTAG
GAAGAAGTATGGGTAGTGGGTCAGAATATTCTGATGAAATTGCAATCAAA
ATTGATAAACAAATACATGATATAGTAGAAAAATGCTATCAAGAAACAGT
ACAAATTATTCAAGATAATAGAATAGTCATTGATAGATTAGTAGATTTAC
TGATTGAAAAAGAAACTATTCAAGGAGAAGAGTTTAGAGAAATTATTAAT
GAATATACACCTGTTCCACAAAAAGAATTATATGTAACATAA

protein sequence of Gcaud1682.t1

>Gcaud1682.t1 ID=Gcaud1682.t1|Name=Gcaud1682.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=464bp
MEAKTGVVFNDVAGIDEAKEEFEEVVTFLKKPERFTAVGAKIPKGVLLIG
PPGTGKTLLAKAIAGEANVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE
NAPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGVI
VIAATNRADILDSALLRPGRFDRQVSVEIPDFKGRLEILKVHAKNKKMEP
SISLSMIARRTPGFSGADLANLLNEAAILTARRRKKYITLNEIDASIDRI
VAGMEGTALIDSKSKRLIAYHEIGHAIVGTLLKDHDPVQKVTLIPRGQAK
GLTWFTPGEDQNLISRSQILSRIMGALGGRAAEDVVFGDTEVTTGASNDL
QQVTSMARQMVTRFGMSNIGPLCLESEEANPFLGRSMGSGSEYSDEIAIK
IDKQIHDIVEKCYQETVQIIQDNRIVIDRLVDLLIEKETIQGEEFREIIN
EYTPVPQKELYVT*

mRNA from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1682.t1 ID=Gcaud1682.t1|Name=Gcaud1682.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTAAAACAGGTGTAGTATTCAATGATGTCGCAGGAATTGATGA
GGCCAAAGAAGAATTTGAAGAAGTGGTTACATTCTTAAAAAAACCCGAAA
GATTCACTGCTGTAGGAGCAAAGATACCTAAAGGTGTTCTATTAATAGGT
CCTCCTGGAACAGGAAAGACATTATTAGCTAAGGCAATTGCAGGAGAAGC
CAATGTACCTTTTTTTAGTATTTCGGGATCTGAATTTGTAGAAATGTTTG
TGGGCGTAGGTGCTTCACGTGTCAGAGATCTGTTTAAAAAAGCAAAAGAA
AATGCTCCATGTATCGTATTCATAGATGAAATAGATGCAGTTGGCAGACA
AAGAGGAACAGGAATTGGTGGTGGTAATGACGAACGAGAACAAACACTAA
ATCAATTATTAACTGAAATGGATGGTTTTGAAGGAAACACAGGAGTTATA
GTAATTGCAGCAACCAACCGAGCTGATATACTCGATTCTGCTTTATTAAG
ACCTGGTCGTTTTGATCGTCAAGTATCTGTAGAAATACCAGATTTTAAAG
GAAGACTGGAAATACTAAAAGTACATGCTAAGAATAAAAAAATGGAACCC
AGTATATCTTTATCAATGATAGCTAGAAGAACTCCAGGCTTTTCGGGAGC
AGATTTAGCAAATTTATTAAATGAAGCAGCTATACTCACAGCTAGACGGA
GAAAAAAATATATTACATTAAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCAGGTATGGAAGGAACAGCACTAATTGATAGCAAAAGCAAACGTTT
AATTGCATACCACGAGATTGGACATGCAATAGTTGGAACACTTCTTAAAG
ATCATGATCCAGTACAAAAAGTAACCTTGATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACACCAGGAGAAGACCAAAATTTAATATCCAGATC
TCAAATTTTATCACGTATAATGGGAGCATTAGGTGGTAGAGCTGCAGAAG
ATGTTGTATTTGGAGATACAGAGGTTACTACTGGAGCTAGTAATGATTTA
CAACAAGTAACATCTATGGCTCGTCAAATGGTCACACGATTTGGCATGTC
AAATATAGGTCCATTATGCTTAGAAAGTGAAGAAGCAAACCCATTCCTAG
GAAGAAGTATGGGTAGTGGGTCAGAATATTCTGATGAAATTGCAATCAAA
ATTGATAAACAAATACATGATATAGTAGAAAAATGCTATCAAGAAACAGT
ACAAATTATTCAAGATAATAGAATAGTCATTGATAGATTAGTAGATTTAC
TGATTGAAAAAGAAACTATTCAAGGAGAAGAGTTTAGAGAAATTATTAAT
GAATATACACCTGTTCCACAAAAAGAATTATATGTAACATAA

Coding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+

>Gcaud1682.t1 ID=Gcaud1682.t1|Name=Gcaud1682.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1392bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:1126..2517+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTAAAACAGGTGTAGTATTCAATGATGTCGCAGGAATTGATGA
GGCCAAAGAAGAATTTGAAGAAGTGGTTACATTCTTAAAAAAACCCGAAA
GATTCACTGCTGTAGGAGCAAAGATACCTAAAGGTGTTCTATTAATAGGT
CCTCCTGGAACAGGAAAGACATTATTAGCTAAGGCAATTGCAGGAGAAGC
CAATGTACCTTTTTTTAGTATTTCGGGATCTGAATTTGTAGAAATGTTTG
TGGGCGTAGGTGCTTCACGTGTCAGAGATCTGTTTAAAAAAGCAAAAGAA
AATGCTCCATGTATCGTATTCATAGATGAAATAGATGCAGTTGGCAGACA
AAGAGGAACAGGAATTGGTGGTGGTAATGACGAACGAGAACAAACACTAA
ATCAATTATTAACTGAAATGGATGGTTTTGAAGGAAACACAGGAGTTATA
GTAATTGCAGCAACCAACCGAGCTGATATACTCGATTCTGCTTTATTAAG
ACCTGGTCGTTTTGATCGTCAAGTATCTGTAGAAATACCAGATTTTAAAG
GAAGACTGGAAATACTAAAAGTACATGCTAAGAATAAAAAAATGGAACCC
AGTATATCTTTATCAATGATAGCTAGAAGAACTCCAGGCTTTTCGGGAGC
AGATTTAGCAAATTTATTAAATGAAGCAGCTATACTCACAGCTAGACGGA
GAAAAAAATATATTACATTAAACGAAATAGATGCTTCTATTGATCGCATA
GTAGCAGGTATGGAAGGAACAGCACTAATTGATAGCAAAAGCAAACGTTT
AATTGCATACCACGAGATTGGACATGCAATAGTTGGAACACTTCTTAAAG
ATCATGATCCAGTACAAAAAGTAACCTTGATACCTCGTGGTCAAGCTAAA
GGATTAACTTGGTTTACACCAGGAGAAGACCAAAATTTAATATCCAGATC
TCAAATTTTATCACGTATAATGGGAGCATTAGGTGGTAGAGCTGCAGAAG
ATGTTGTATTTGGAGATACAGAGGTTACTACTGGAGCTAGTAATGATTTA
CAACAAGTAACATCTATGGCTCGTCAAATGGTCACACGATTTGGCATGTC
AAATATAGGTCCATTATGCTTAGAAAGTGAAGAAGCAAACCCATTCCTAG
GAAGAAGTATGGGTAGTGGGTCAGAATATTCTGATGAAATTGCAATCAAA
ATTGATAAACAAATACATGATATAGTAGAAAAATGCTATCAAGAAACAGT
ACAAATTATTCAAGATAATAGAATAGTCATTGATAGATTAGTAGATTTAC
TGATTGAAAAAGAAACTATTCAAGGAGAAGAGTTTAGAGAAATTATTAAT
GAATATACACCTGTTCCACAAAAAGAATTATATGTAACATAA