Gcaud1680.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1680.t1
Unique Name	Gcaud1680.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	572

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_494_length_23790_cov_4.579307	contig	NODE_494_length_23790_cov_4.579307:16822..18537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35754.JNYJ01000021_gene536
PFAMs	Calx-beta,HYR,VWA
Max annot lvl	201174\|Actinobacteria
Evalue	5.43e-19
EggNOG OGs	COG2304@1\|root,COG2304@2\|Bacteria,2IDJM@201174\|Actinobacteria,4DEGK@85008\|Micromonosporales
Description	von Willebrand factor (vWF) type A domain
COG category	V

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1680	Gcaud1680	Gracilaria caudata M_176_S67 male	gene	NODE_494_length_23790_cov_4.579307 16822..18537 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1680.t1.start1	Gcaud1680.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_494_length_23790_cov_4.579307 16822..16824 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1680.t1.CDS1	Gcaud1680.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_494_length_23790_cov_4.579307 16822..18537 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1680.t1.exon1	Gcaud1680.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_494_length_23790_cov_4.579307 16822..18537 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1680.t1.stop1	Gcaud1680.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_494_length_23790_cov_4.579307 18535..18537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1680.t1	Gcaud1680.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_494_length_23790_cov_4.579307 16822..18537 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+
coding sequence from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+

mRNA sequence

>Gcaud1680.t1 ID=Gcaud1680.t1|Name=Gcaud1680.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=572bp
MTRSITILLLVTLLSVTFAAPHPLSRQNSASSGTQTSGSGASGNNAVAVS
ADTQSGSGAAAGEDNAAVIAGPGFASGVANTNPTPSPLATPSPSVSSSVS
PTPSASPSLSASVSSTSSPSASASPSKTEEDDSEQATVTAGTADGNSATA
TGTNVVSAASNGDSGAASAAGENAAGAFAGPCQAGGFAFGNGQFPFNFGP
FAGLFGSPSTNCSLQPTKSPSPSPVVESSSPSTVPPVPDVVELNETVQIP
PSTRLSDPITFSFTVEVRPGSGSTLEDLYLLTDLTTSTIGINSEIRENFA
QIVTERSNVSSNVAFGVGSYTDEKDDPFFENRQSISTNISAVKKAIGNLQ
IIKSFSNGDAPEANLAALYTVATSDNIGWREGSRRIVMHFGDAPGHEPSC
ISSLQLRRDNVITALNKQKITVVAFSFVLASSKYSPGLNGPTKWVGSGCE
AAEPAPTDVGQADAITAGTGGSVVEQEELTQVIENTLAEVHSLPQTLEAD
TSDCEAQNVAISFSPGLPLTISSGSSQTISQSVEITACGDAKGAFTCTVR
FSLSGTTIGEHTLSSSGLDVC*

spliced messenger RNA

>Gcaud1680.t1 ID=Gcaud1680.t1|Name=Gcaud1680.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGCTCCATCACCATTCTGCTGCTAGTCACTCTGCTCTCGGTCAC
ATTCGCTGCCCCTCACCCGCTTTCTCGTCAGAATTCCGCCTCTTCCGGAA
CTCAAACAAGCGGCTCAGGCGCTTCGGGCAACAATGCTGTAGCTGTATCG
GCTGACACTCAGTCTGGATCTGGAGCTGCCGCTGGAGAGGACAACGCCGC
TGTGATAGCGGGTCCTGGTTTTGCTTCAGGCGTTGCGAACACAAATCCTA
CTCCGTCACCCTTGGCGACCCCGTCACCTTCCGTTAGCAGCTCTGTTTCT
CCGACACCTTCTGCATCACCTTCGTTGTCCGCTTCCGTCTCTTCTACGTC
GAGCCCGTCAGCCTCTGCCTCTCCATCTAAGACTGAGGAAGACGATAGCG
AACAGGCCACAGTGACGGCTGGTACTGCTGACGGTAATAGCGCGACTGCA
ACGGGTACTAATGTCGTGAGTGCTGCATCCAACGGTGATTCCGGCGCCGC
CAGTGCGGCAGGCGAAAACGCTGCCGGTGCTTTCGCTGGACCGTGTCAGG
CTGGTGGTTTTGCCTTCGGCAATGGCCAGTTCCCATTCAACTTCGGTCCG
TTTGCCGGCTTGTTCGGGTCCCCATCCACAAATTGTTCATTACAACCGAC
AAAATCTCCGTCACCGTCTCCAGTTGTGGAGAGTTCTTCCCCATCTACTG
TCCCTCCAGTTCCAGATGTCGTGGAATTGAATGAAACGGTGCAGATTCCG
CCTAGCACGCGGCTTTCAGATCCAATTACATTCAGTTTTACCGTGGAAGT
TAGACCTGGCTCAGGTTCCACTCTGGAAGATTTGTACTTGCTCACTGATC
TGACCACCTCTACGATAGGAATCAATTCCGAAATCAGAGAGAACTTTGCC
CAGATTGTGACTGAACGTTCGAATGTGTCTTCCAATGTTGCTTTCGGTGT
TGGTTCCTACACAGACGAAAAAGACGATCCGTTCTTTGAAAACAGACAAA
GTATATCCACCAATATCTCGGCTGTTAAGAAAGCCATTGGAAACCTTCAG
ATTATTAAGAGTTTTTCCAATGGTGACGCTCCAGAAGCTAATCTGGCTGC
GTTGTACACTGTTGCAACTTCCGATAATATTGGATGGAGAGAAGGGTCTC
GTCGTATCGTGATGCACTTCGGAGACGCCCCAGGCCATGAACCCTCGTGC
ATATCTTCGCTTCAGCTTCGTCGCGATAATGTCATCACCGCTTTGAACAA
ACAAAAGATCACGGTTGTGGCTTTTAGCTTTGTGCTAGCTTCTAGCAAAT
ATTCTCCTGGTCTGAATGGTCCAACAAAATGGGTGGGCTCTGGCTGCGAA
GCTGCAGAGCCAGCACCGACAGATGTTGGACAAGCTGATGCCATTACCGC
TGGAACAGGTGGGAGTGTCGTTGAGCAGGAAGAGCTGACGCAAGTGATTG
AGAACACGCTTGCGGAAGTCCATTCGCTTCCTCAAACGCTTGAAGCAGAT
ACGTCAGACTGCGAGGCTCAAAACGTAGCAATATCTTTCTCTCCAGGTCT
GCCGCTCACAATTTCTTCTGGAAGCTCTCAGACGATTTCACAAAGTGTGG
AGATAACTGCTTGCGGAGATGCGAAGGGCGCGTTTACATGCACCGTGCGT
TTCAGCCTAAGTGGCACTACTATTGGAGAGCATACTCTGTCTTCTTCGGG
TCTAGACGTATGTTAA

protein sequence of Gcaud1680.t1

>Gcaud1680.t1 ID=Gcaud1680.t1|Name=Gcaud1680.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=572bp
MTRSITILLLVTLLSVTFAAPHPLSRQNSASSGTQTSGSGASGNNAVAVS
ADTQSGSGAAAGEDNAAVIAGPGFASGVANTNPTPSPLATPSPSVSSSVS
PTPSASPSLSASVSSTSSPSASASPSKTEEDDSEQATVTAGTADGNSATA
TGTNVVSAASNGDSGAASAAGENAAGAFAGPCQAGGFAFGNGQFPFNFGP
FAGLFGSPSTNCSLQPTKSPSPSPVVESSSPSTVPPVPDVVELNETVQIP
PSTRLSDPITFSFTVEVRPGSGSTLEDLYLLTDLTTSTIGINSEIRENFA
QIVTERSNVSSNVAFGVGSYTDEKDDPFFENRQSISTNISAVKKAIGNLQ
IIKSFSNGDAPEANLAALYTVATSDNIGWREGSRRIVMHFGDAPGHEPSC
ISSLQLRRDNVITALNKQKITVVAFSFVLASSKYSPGLNGPTKWVGSGCE
AAEPAPTDVGQADAITAGTGGSVVEQEELTQVIENTLAEVHSLPQTLEAD
TSDCEAQNVAISFSPGLPLTISSGSSQTISQSVEITACGDAKGAFTCTVR
FSLSGTTIGEHTLSSSGLDVC*

mRNA from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1680.t1 ID=Gcaud1680.t1|Name=Gcaud1680.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1716bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+ (Gracilaria caudata M_176_S67 male)
ATGACACGCTCCATCACCATTCTGCTGCTAGTCACTCTGCTCTCGGTCAC
ATTCGCTGCCCCTCACCCGCTTTCTCGTCAGAATTCCGCCTCTTCCGGAA
CTCAAACAAGCGGCTCAGGCGCTTCGGGCAACAATGCTGTAGCTGTATCG
GCTGACACTCAGTCTGGATCTGGAGCTGCCGCTGGAGAGGACAACGCCGC
TGTGATAGCGGGTCCTGGTTTTGCTTCAGGCGTTGCGAACACAAATCCTA
CTCCGTCACCCTTGGCGACCCCGTCACCTTCCGTTAGCAGCTCTGTTTCT
CCGACACCTTCTGCATCACCTTCGTTGTCCGCTTCCGTCTCTTCTACGTC
GAGCCCGTCAGCCTCTGCCTCTCCATCTAAGACTGAGGAAGACGATAGCG
AACAGGCCACAGTGACGGCTGGTACTGCTGACGGTAATAGCGCGACTGCA
ACGGGTACTAATGTCGTGAGTGCTGCATCCAACGGTGATTCCGGCGCCGC
CAGTGCGGCAGGCGAAAACGCTGCCGGTGCTTTCGCTGGACCGTGTCAGG
CTGGTGGTTTTGCCTTCGGCAATGGCCAGTTCCCATTCAACTTCGGTCCG
TTTGCCGGCTTGTTCGGGTCCCCATCCACAAATTGTTCATTACAACCGAC
AAAATCTCCGTCACCGTCTCCAGTTGTGGAGAGTTCTTCCCCATCTACTG
TCCCTCCAGTTCCAGATGTCGTGGAATTGAATGAAACGGTGCAGATTCCG
CCTAGCACGCGGCTTTCAGATCCAATTACATTCAGTTTTACCGTGGAAGT
TAGACCTGGCTCAGGTTCCACTCTGGAAGATTTGTACTTGCTCACTGATC
TGACCACCTCTACGATAGGAATCAATTCCGAAATCAGAGAGAACTTTGCC
CAGATTGTGACTGAACGTTCGAATGTGTCTTCCAATGTTGCTTTCGGTGT
TGGTTCCTACACAGACGAAAAAGACGATCCGTTCTTTGAAAACAGACAAA
GTATATCCACCAATATCTCGGCTGTTAAGAAAGCCATTGGAAACCTTCAG
ATTATTAAGAGTTTTTCCAATGGTGACGCTCCAGAAGCTAATCTGGCTGC
GTTGTACACTGTTGCAACTTCCGATAATATTGGATGGAGAGAAGGGTCTC
GTCGTATCGTGATGCACTTCGGAGACGCCCCAGGCCATGAACCCTCGTGC
ATATCTTCGCTTCAGCTTCGTCGCGATAATGTCATCACCGCTTTGAACAA
ACAAAAGATCACGGTTGTGGCTTTTAGCTTTGTGCTAGCTTCTAGCAAAT
ATTCTCCTGGTCTGAATGGTCCAACAAAATGGGTGGGCTCTGGCTGCGAA
GCTGCAGAGCCAGCACCGACAGATGTTGGACAAGCTGATGCCATTACCGC
TGGAACAGGTGGGAGTGTCGTTGAGCAGGAAGAGCTGACGCAAGTGATTG
AGAACACGCTTGCGGAAGTCCATTCGCTTCCTCAAACGCTTGAAGCAGAT
ACGTCAGACTGCGAGGCTCAAAACGTAGCAATATCTTTCTCTCCAGGTCT
GCCGCTCACAATTTCTTCTGGAAGCTCTCAGACGATTTCACAAAGTGTGG
AGATAACTGCTTGCGGAGATGCGAAGGGCGCGTTTACATGCACCGTGCGT
TTCAGCCTAAGTGGCACTACTATTGGAGAGCATACTCTGTCTTCTTCGGG
TCTAGACGTATGTTAA

Coding sequence (CDS) from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+

>Gcaud1680.t1 ID=Gcaud1680.t1|Name=Gcaud1680.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1716bp|location=Sequence derived from alignment at NODE_494_length_23790_cov_4.579307:16822..18537+ (Gracilaria caudata M_176_S67 male)
ATGACACGCTCCATCACCATTCTGCTGCTAGTCACTCTGCTCTCGGTCAC
ATTCGCTGCCCCTCACCCGCTTTCTCGTCAGAATTCCGCCTCTTCCGGAA
CTCAAACAAGCGGCTCAGGCGCTTCGGGCAACAATGCTGTAGCTGTATCG
GCTGACACTCAGTCTGGATCTGGAGCTGCCGCTGGAGAGGACAACGCCGC
TGTGATAGCGGGTCCTGGTTTTGCTTCAGGCGTTGCGAACACAAATCCTA
CTCCGTCACCCTTGGCGACCCCGTCACCTTCCGTTAGCAGCTCTGTTTCT
CCGACACCTTCTGCATCACCTTCGTTGTCCGCTTCCGTCTCTTCTACGTC
GAGCCCGTCAGCCTCTGCCTCTCCATCTAAGACTGAGGAAGACGATAGCG
AACAGGCCACAGTGACGGCTGGTACTGCTGACGGTAATAGCGCGACTGCA
ACGGGTACTAATGTCGTGAGTGCTGCATCCAACGGTGATTCCGGCGCCGC
CAGTGCGGCAGGCGAAAACGCTGCCGGTGCTTTCGCTGGACCGTGTCAGG
CTGGTGGTTTTGCCTTCGGCAATGGCCAGTTCCCATTCAACTTCGGTCCG
TTTGCCGGCTTGTTCGGGTCCCCATCCACAAATTGTTCATTACAACCGAC
AAAATCTCCGTCACCGTCTCCAGTTGTGGAGAGTTCTTCCCCATCTACTG
TCCCTCCAGTTCCAGATGTCGTGGAATTGAATGAAACGGTGCAGATTCCG
CCTAGCACGCGGCTTTCAGATCCAATTACATTCAGTTTTACCGTGGAAGT
TAGACCTGGCTCAGGTTCCACTCTGGAAGATTTGTACTTGCTCACTGATC
TGACCACCTCTACGATAGGAATCAATTCCGAAATCAGAGAGAACTTTGCC
CAGATTGTGACTGAACGTTCGAATGTGTCTTCCAATGTTGCTTTCGGTGT
TGGTTCCTACACAGACGAAAAAGACGATCCGTTCTTTGAAAACAGACAAA
GTATATCCACCAATATCTCGGCTGTTAAGAAAGCCATTGGAAACCTTCAG
ATTATTAAGAGTTTTTCCAATGGTGACGCTCCAGAAGCTAATCTGGCTGC
GTTGTACACTGTTGCAACTTCCGATAATATTGGATGGAGAGAAGGGTCTC
GTCGTATCGTGATGCACTTCGGAGACGCCCCAGGCCATGAACCCTCGTGC
ATATCTTCGCTTCAGCTTCGTCGCGATAATGTCATCACCGCTTTGAACAA
ACAAAAGATCACGGTTGTGGCTTTTAGCTTTGTGCTAGCTTCTAGCAAAT
ATTCTCCTGGTCTGAATGGTCCAACAAAATGGGTGGGCTCTGGCTGCGAA
GCTGCAGAGCCAGCACCGACAGATGTTGGACAAGCTGATGCCATTACCGC
TGGAACAGGTGGGAGTGTCGTTGAGCAGGAAGAGCTGACGCAAGTGATTG
AGAACACGCTTGCGGAAGTCCATTCGCTTCCTCAAACGCTTGAAGCAGAT
ACGTCAGACTGCGAGGCTCAAAACGTAGCAATATCTTTCTCTCCAGGTCT
GCCGCTCACAATTTCTTCTGGAAGCTCTCAGACGATTTCACAAAGTGTGG
AGATAACTGCTTGCGGAGATGCGAAGGGCGCGTTTACATGCACCGTGCGT
TTCAGCCTAAGTGGCACTACTATTGGAGAGCATACTCTGTCTTCTTCGGG
TCTAGACGTATGTTAA