Gcaud1673.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1673.t1
Unique Name	Gcaud1673.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	315

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_958_length_15721_cov_4.764299	contig	NODE_958_length_15721_cov_4.764299:1975..2919 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	126957.SMAR002277-PA
Max annot lvl	33154\|Opisthokonta
Evalue	1.65e-12
EggNOG OGs	2E2JN@1\|root,2S9T1@2759\|Eukaryota,3A8KK@33154\|Opisthokonta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1673	Gcaud1673	Gracilaria caudata M_176_S67 male	gene	NODE_958_length_15721_cov_4.764299 1975..2919 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1673.t1.stop1	Gcaud1673.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_958_length_15721_cov_4.764299 1975..1977 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1673.t1.CDS1	Gcaud1673.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_958_length_15721_cov_4.764299 1975..2919 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1673.t1.exon1	Gcaud1673.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_958_length_15721_cov_4.764299 1975..2919 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1673.t1.start1	Gcaud1673.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_958_length_15721_cov_4.764299 2917..2919 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1673.t1	Gcaud1673.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_958_length_15721_cov_4.764299 1975..2919 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_958_length_15721_cov_4.764299:1975..2919-
coding sequence from alignment at NODE_958_length_15721_cov_4.764299:1975..2919-

mRNA sequence

>Gcaud1673.t1 ID=Gcaud1673.t1|Name=Gcaud1673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=315bp
MSSSKVEVPGQAEWVLKATASVTSDFHSKVPYTRKVATTVTSSRSELENL
AREHSSSSSQSLSLTVGAEVELASAEATTKFGFTQSSLTNAANETKSTKT
TTKKTTSEIGPIDLDPGESVYIFQKELKFSSNSFETTELTWSNTRTPPEL
DEPVTLKIPVTVISSSYLEKIDVHTYDGHVYSEDFMQVVGHEANKSENVQ
DLNKGFGGKYAYLEPKWTTDASQAADCIEVKLAGVIFEETSEKNLTNFAE
GVEGDDYFRFIEAQNTGESKKIVAAQLWDGQLHRTPDGWDGYSKDLNEGR
EGRYLYIVYKLCEA*

spliced messenger RNA

>Gcaud1673.t1 ID=Gcaud1673.t1|Name=Gcaud1673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:1975..2919- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCAAGCAAGGTGGAAGTTCCGGGTCAAGCGGAGTGGGTCTTGAA
AGCGACTGCGTCGGTCACATCCGACTTCCACTCAAAGGTGCCGTATACCA
GGAAAGTCGCAACCACCGTCACAAGCTCGCGATCTGAGCTGGAGAATTTG
GCCAGGGAGCATAGCTCATCCAGCTCGCAATCGCTTTCGCTCACGGTCGG
CGCCGAGGTTGAATTAGCATCCGCCGAAGCCACCACAAAATTCGGATTCA
CGCAGTCGTCTCTTACCAATGCGGCCAACGAAACGAAATCCACCAAGACG
ACAACGAAGAAAACCACGAGTGAGATAGGACCGATCGACCTCGATCCTGG
TGAATCGGTTTACATTTTTCAGAAGGAGTTGAAGTTTTCATCGAACAGCT
TCGAAACCACCGAACTCACCTGGTCCAATACCAGGACTCCTCCAGAACTT
GATGAACCTGTTACCTTGAAAATCCCCGTCACAGTTATCAGTTCTTCTTA
CCTCGAGAAAATCGACGTGCACACATACGACGGTCATGTCTACAGTGAAG
ACTTCATGCAGGTGGTAGGTCACGAAGCGAATAAGAGCGAAAACGTACAG
GACCTCAATAAGGGCTTTGGAGGAAAGTATGCATACTTGGAACCGAAGTG
GACTACTGACGCAAGCCAGGCAGCCGATTGCATTGAAGTGAAACTTGCGG
GTGTTATCTTCGAGGAGACTAGTGAAAAGAATCTCACCAACTTTGCAGAG
GGAGTTGAAGGTGACGATTACTTCCGATTCATCGAAGCTCAAAATACGGG
TGAGTCAAAGAAAATTGTTGCAGCACAACTGTGGGATGGTCAGCTGCATC
GCACCCCTGACGGTTGGGATGGATACAGCAAGGACCTGAACGAGGGGCGT
GAGGGTCGCTATCTTTACATTGTGTACAAGCTTTGCGAGGCTTAA

protein sequence of Gcaud1673.t1

>Gcaud1673.t1 ID=Gcaud1673.t1|Name=Gcaud1673.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=315bp
MSSSKVEVPGQAEWVLKATASVTSDFHSKVPYTRKVATTVTSSRSELENL
AREHSSSSSQSLSLTVGAEVELASAEATTKFGFTQSSLTNAANETKSTKT
TTKKTTSEIGPIDLDPGESVYIFQKELKFSSNSFETTELTWSNTRTPPEL
DEPVTLKIPVTVISSSYLEKIDVHTYDGHVYSEDFMQVVGHEANKSENVQ
DLNKGFGGKYAYLEPKWTTDASQAADCIEVKLAGVIFEETSEKNLTNFAE
GVEGDDYFRFIEAQNTGESKKIVAAQLWDGQLHRTPDGWDGYSKDLNEGR
EGRYLYIVYKLCEA*

mRNA from alignment at NODE_958_length_15721_cov_4.764299:1975..2919-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1673.t1 ID=Gcaud1673.t1|Name=Gcaud1673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=945bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:1975..2919- (Gracilaria caudata M_176_S67 male)
ATGTCCTCAAGCAAGGTGGAAGTTCCGGGTCAAGCGGAGTGGGTCTTGAA
AGCGACTGCGTCGGTCACATCCGACTTCCACTCAAAGGTGCCGTATACCA
GGAAAGTCGCAACCACCGTCACAAGCTCGCGATCTGAGCTGGAGAATTTG
GCCAGGGAGCATAGCTCATCCAGCTCGCAATCGCTTTCGCTCACGGTCGG
CGCCGAGGTTGAATTAGCATCCGCCGAAGCCACCACAAAATTCGGATTCA
CGCAGTCGTCTCTTACCAATGCGGCCAACGAAACGAAATCCACCAAGACG
ACAACGAAGAAAACCACGAGTGAGATAGGACCGATCGACCTCGATCCTGG
TGAATCGGTTTACATTTTTCAGAAGGAGTTGAAGTTTTCATCGAACAGCT
TCGAAACCACCGAACTCACCTGGTCCAATACCAGGACTCCTCCAGAACTT
GATGAACCTGTTACCTTGAAAATCCCCGTCACAGTTATCAGTTCTTCTTA
CCTCGAGAAAATCGACGTGCACACATACGACGGTCATGTCTACAGTGAAG
ACTTCATGCAGGTGGTAGGTCACGAAGCGAATAAGAGCGAAAACGTACAG
GACCTCAATAAGGGCTTTGGAGGAAAGTATGCATACTTGGAACCGAAGTG
GACTACTGACGCAAGCCAGGCAGCCGATTGCATTGAAGTGAAACTTGCGG
GTGTTATCTTCGAGGAGACTAGTGAAAAGAATCTCACCAACTTTGCAGAG
GGAGTTGAAGGTGACGATTACTTCCGATTCATCGAAGCTCAAAATACGGG
TGAGTCAAAGAAAATTGTTGCAGCACAACTGTGGGATGGTCAGCTGCATC
GCACCCCTGACGGTTGGGATGGATACAGCAAGGACCTGAACGAGGGGCGT
GAGGGTCGCTATCTTTACATTGTGTACAAGCTTTGCGAGGCTTAA

Coding sequence (CDS) from alignment at NODE_958_length_15721_cov_4.764299:1975..2919-

>Gcaud1673.t1 ID=Gcaud1673.t1|Name=Gcaud1673.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=945bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:1975..2919- (Gracilaria caudata M_176_S67 male)
ATGTCCTCAAGCAAGGTGGAAGTTCCGGGTCAAGCGGAGTGGGTCTTGAA
AGCGACTGCGTCGGTCACATCCGACTTCCACTCAAAGGTGCCGTATACCA
GGAAAGTCGCAACCACCGTCACAAGCTCGCGATCTGAGCTGGAGAATTTG
GCCAGGGAGCATAGCTCATCCAGCTCGCAATCGCTTTCGCTCACGGTCGG
CGCCGAGGTTGAATTAGCATCCGCCGAAGCCACCACAAAATTCGGATTCA
CGCAGTCGTCTCTTACCAATGCGGCCAACGAAACGAAATCCACCAAGACG
ACAACGAAGAAAACCACGAGTGAGATAGGACCGATCGACCTCGATCCTGG
TGAATCGGTTTACATTTTTCAGAAGGAGTTGAAGTTTTCATCGAACAGCT
TCGAAACCACCGAACTCACCTGGTCCAATACCAGGACTCCTCCAGAACTT
GATGAACCTGTTACCTTGAAAATCCCCGTCACAGTTATCAGTTCTTCTTA
CCTCGAGAAAATCGACGTGCACACATACGACGGTCATGTCTACAGTGAAG
ACTTCATGCAGGTGGTAGGTCACGAAGCGAATAAGAGCGAAAACGTACAG
GACCTCAATAAGGGCTTTGGAGGAAAGTATGCATACTTGGAACCGAAGTG
GACTACTGACGCAAGCCAGGCAGCCGATTGCATTGAAGTGAAACTTGCGG
GTGTTATCTTCGAGGAGACTAGTGAAAAGAATCTCACCAACTTTGCAGAG
GGAGTTGAAGGTGACGATTACTTCCGATTCATCGAAGCTCAAAATACGGG
TGAGTCAAAGAAAATTGTTGCAGCACAACTGTGGGATGGTCAGCTGCATC
GCACCCCTGACGGTTGGGATGGATACAGCAAGGACCTGAACGAGGGGCGT
GAGGGTCGCTATCTTTACATTGTGTACAAGCTTTGCGAGGCTTAA