Gcaud1672.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1672.t1
Unique Name	Gcaud1672.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	424

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_860_length_16952_cov_4.432299	contig	NODE_860_length_16952_cov_4.432299:15467..16738 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.K0SBK5
PFAMs	Na_H_Exchanger
Max annot lvl	2836\|Bacillariophyta
Evalue	1.39e-42
EggNOG OGs	COG0475@1\|root,KOG1650@2759\|Eukaryota,2XB5T@2836\|Bacillariophyta
Description	Sodium/hydrogen exchanger family
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1672	Gcaud1672	Gracilaria caudata M_176_S67 male	gene	NODE_860_length_16952_cov_4.432299 15467..16738 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1672.t1.start1	Gcaud1672.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_860_length_16952_cov_4.432299 15467..15469 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1672.t1.CDS1	Gcaud1672.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_860_length_16952_cov_4.432299 15467..16738 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1672.t1.exon1	Gcaud1672.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_860_length_16952_cov_4.432299 15467..16738 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1672.t1.stop1	Gcaud1672.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_860_length_16952_cov_4.432299 16736..16738 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1672.t1	Gcaud1672.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_860_length_16952_cov_4.432299 15467..16738 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+
coding sequence from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+

mRNA sequence

>Gcaud1672.t1 ID=Gcaud1672.t1|Name=Gcaud1672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=424bp
MESELDLVRIGLFLSSSYAGGEIASLAGTSPVVAYIAIGAMMGPPLANFV
PISTGLTLAGLLGILLSVVDAGLGTRLEDLRSCLARALLVAVLGVAFPIA
GAILIISITEVIEDKFDVSNTLKTAFAVGSAIAPTSLGVTARLLRENGEL
ETKLGQLISVAAVFDDVISLVLLSQVTAVAAPSTSAWSLLQPVVFSLIFI
IGATTFAKFLPTLLPSIWIKAKVPEQYYPRFGLWLLFLLMMAITYLAYLA
KTSFLLGGYLIGIAFAQIPSSIASDPWNCSVAFHIEWLSILFFAGTIGFA
IPLKELFSRSAIGLGALLSLSSVFGKMVCGLGMLPNQVDGIAVAVAMLGR
GEFGFLIASQAQASGLLTQRIYAATTWGVLVPTILAPIVFRPVFRWRERR
LDPMTSSETSDHSNQTSSYEQNG*

spliced messenger RNA

>Gcaud1672.t1 ID=Gcaud1672.t1|Name=Gcaud1672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGTGAGTTGGATCTTGTACGCATTGGCTTGTTCCTGTCAAGTTC
ATATGCTGGGGGTGAAATAGCTTCTCTTGCTGGCACTTCTCCTGTCGTAG
CGTACATTGCTATTGGCGCAATGATGGGCCCACCACTTGCAAACTTTGTT
CCAATTTCTACCGGTCTCACCCTCGCGGGGTTGCTGGGCATTCTTCTCAG
CGTCGTGGACGCCGGTCTTGGGACAAGATTGGAAGACCTGAGATCGTGCC
TCGCACGAGCACTTTTAGTCGCAGTTTTGGGGGTTGCGTTTCCAATAGCG
GGCGCCATTCTAATCATATCCATTACCGAGGTGATTGAAGACAAATTCGA
CGTCTCAAATACCTTGAAAACCGCTTTTGCAGTGGGCTCCGCGATTGCGC
CAACTTCGCTCGGAGTGACTGCTAGGCTTCTCCGTGAAAACGGAGAGTTG
GAGACAAAACTAGGTCAGCTCATTTCTGTTGCAGCTGTTTTCGACGATGT
AATAAGCTTAGTTCTCTTATCACAAGTAACTGCAGTTGCGGCTCCAAGCA
CAAGTGCCTGGAGCCTCTTACAACCTGTGGTTTTCTCTTTGATATTCATA
ATAGGAGCGACAACCTTTGCCAAGTTCCTACCGACCCTTTTACCAAGTAT
ATGGATAAAGGCCAAAGTTCCTGAGCAGTATTATCCTAGATTTGGACTTT
GGCTTCTCTTCCTCTTGATGATGGCAATTACTTACCTGGCTTACTTGGCA
AAGACGAGCTTCCTGTTAGGTGGGTATTTGATAGGTATTGCATTTGCTCA
GATACCATCTTCTATTGCTAGTGACCCCTGGAATTGTTCAGTAGCGTTCC
ACATTGAGTGGCTATCTATTCTCTTCTTCGCTGGAACGATTGGATTCGCT
ATTCCATTGAAAGAACTTTTTTCCAGGAGCGCGATTGGACTTGGAGCTCT
TTTATCGTTGTCAAGTGTTTTTGGGAAGATGGTATGTGGATTAGGCATGC
TGCCAAACCAGGTCGATGGAATTGCTGTCGCCGTCGCTATGCTTGGAAGG
GGCGAGTTTGGATTTCTAATTGCTTCGCAGGCACAAGCGTCAGGGCTTTT
GACCCAGCGAATATACGCCGCAACCACTTGGGGTGTTCTCGTTCCAACAA
TTCTCGCACCAATAGTCTTCAGGCCAGTTTTTCGATGGAGAGAACGACGA
CTGGATCCTATGACAAGCAGTGAGACTTCTGATCACTCTAACCAAACGTC
AAGCTATGAGCAGAATGGTTGA

protein sequence of Gcaud1672.t1

>Gcaud1672.t1 ID=Gcaud1672.t1|Name=Gcaud1672.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=424bp
MESELDLVRIGLFLSSSYAGGEIASLAGTSPVVAYIAIGAMMGPPLANFV
PISTGLTLAGLLGILLSVVDAGLGTRLEDLRSCLARALLVAVLGVAFPIA
GAILIISITEVIEDKFDVSNTLKTAFAVGSAIAPTSLGVTARLLRENGEL
ETKLGQLISVAAVFDDVISLVLLSQVTAVAAPSTSAWSLLQPVVFSLIFI
IGATTFAKFLPTLLPSIWIKAKVPEQYYPRFGLWLLFLLMMAITYLAYLA
KTSFLLGGYLIGIAFAQIPSSIASDPWNCSVAFHIEWLSILFFAGTIGFA
IPLKELFSRSAIGLGALLSLSSVFGKMVCGLGMLPNQVDGIAVAVAMLGR
GEFGFLIASQAQASGLLTQRIYAATTWGVLVPTILAPIVFRPVFRWRERR
LDPMTSSETSDHSNQTSSYEQNG*

mRNA from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1672.t1 ID=Gcaud1672.t1|Name=Gcaud1672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGTGAGTTGGATCTTGTACGCATTGGCTTGTTCCTGTCAAGTTC
ATATGCTGGGGGTGAAATAGCTTCTCTTGCTGGCACTTCTCCTGTCGTAG
CGTACATTGCTATTGGCGCAATGATGGGCCCACCACTTGCAAACTTTGTT
CCAATTTCTACCGGTCTCACCCTCGCGGGGTTGCTGGGCATTCTTCTCAG
CGTCGTGGACGCCGGTCTTGGGACAAGATTGGAAGACCTGAGATCGTGCC
TCGCACGAGCACTTTTAGTCGCAGTTTTGGGGGTTGCGTTTCCAATAGCG
GGCGCCATTCTAATCATATCCATTACCGAGGTGATTGAAGACAAATTCGA
CGTCTCAAATACCTTGAAAACCGCTTTTGCAGTGGGCTCCGCGATTGCGC
CAACTTCGCTCGGAGTGACTGCTAGGCTTCTCCGTGAAAACGGAGAGTTG
GAGACAAAACTAGGTCAGCTCATTTCTGTTGCAGCTGTTTTCGACGATGT
AATAAGCTTAGTTCTCTTATCACAAGTAACTGCAGTTGCGGCTCCAAGCA
CAAGTGCCTGGAGCCTCTTACAACCTGTGGTTTTCTCTTTGATATTCATA
ATAGGAGCGACAACCTTTGCCAAGTTCCTACCGACCCTTTTACCAAGTAT
ATGGATAAAGGCCAAAGTTCCTGAGCAGTATTATCCTAGATTTGGACTTT
GGCTTCTCTTCCTCTTGATGATGGCAATTACTTACCTGGCTTACTTGGCA
AAGACGAGCTTCCTGTTAGGTGGGTATTTGATAGGTATTGCATTTGCTCA
GATACCATCTTCTATTGCTAGTGACCCCTGGAATTGTTCAGTAGCGTTCC
ACATTGAGTGGCTATCTATTCTCTTCTTCGCTGGAACGATTGGATTCGCT
ATTCCATTGAAAGAACTTTTTTCCAGGAGCGCGATTGGACTTGGAGCTCT
TTTATCGTTGTCAAGTGTTTTTGGGAAGATGGTATGTGGATTAGGCATGC
TGCCAAACCAGGTCGATGGAATTGCTGTCGCCGTCGCTATGCTTGGAAGG
GGCGAGTTTGGATTTCTAATTGCTTCGCAGGCACAAGCGTCAGGGCTTTT
GACCCAGCGAATATACGCCGCAACCACTTGGGGTGTTCTCGTTCCAACAA
TTCTCGCACCAATAGTCTTCAGGCCAGTTTTTCGATGGAGAGAACGACGA
CTGGATCCTATGACAAGCAGTGAGACTTCTGATCACTCTAACCAAACGTC
AAGCTATGAGCAGAATGGTTGA

Coding sequence (CDS) from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+

>Gcaud1672.t1 ID=Gcaud1672.t1|Name=Gcaud1672.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1272bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:15467..16738+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGTGAGTTGGATCTTGTACGCATTGGCTTGTTCCTGTCAAGTTC
ATATGCTGGGGGTGAAATAGCTTCTCTTGCTGGCACTTCTCCTGTCGTAG
CGTACATTGCTATTGGCGCAATGATGGGCCCACCACTTGCAAACTTTGTT
CCAATTTCTACCGGTCTCACCCTCGCGGGGTTGCTGGGCATTCTTCTCAG
CGTCGTGGACGCCGGTCTTGGGACAAGATTGGAAGACCTGAGATCGTGCC
TCGCACGAGCACTTTTAGTCGCAGTTTTGGGGGTTGCGTTTCCAATAGCG
GGCGCCATTCTAATCATATCCATTACCGAGGTGATTGAAGACAAATTCGA
CGTCTCAAATACCTTGAAAACCGCTTTTGCAGTGGGCTCCGCGATTGCGC
CAACTTCGCTCGGAGTGACTGCTAGGCTTCTCCGTGAAAACGGAGAGTTG
GAGACAAAACTAGGTCAGCTCATTTCTGTTGCAGCTGTTTTCGACGATGT
AATAAGCTTAGTTCTCTTATCACAAGTAACTGCAGTTGCGGCTCCAAGCA
CAAGTGCCTGGAGCCTCTTACAACCTGTGGTTTTCTCTTTGATATTCATA
ATAGGAGCGACAACCTTTGCCAAGTTCCTACCGACCCTTTTACCAAGTAT
ATGGATAAAGGCCAAAGTTCCTGAGCAGTATTATCCTAGATTTGGACTTT
GGCTTCTCTTCCTCTTGATGATGGCAATTACTTACCTGGCTTACTTGGCA
AAGACGAGCTTCCTGTTAGGTGGGTATTTGATAGGTATTGCATTTGCTCA
GATACCATCTTCTATTGCTAGTGACCCCTGGAATTGTTCAGTAGCGTTCC
ACATTGAGTGGCTATCTATTCTCTTCTTCGCTGGAACGATTGGATTCGCT
ATTCCATTGAAAGAACTTTTTTCCAGGAGCGCGATTGGACTTGGAGCTCT
TTTATCGTTGTCAAGTGTTTTTGGGAAGATGGTATGTGGATTAGGCATGC
TGCCAAACCAGGTCGATGGAATTGCTGTCGCCGTCGCTATGCTTGGAAGG
GGCGAGTTTGGATTTCTAATTGCTTCGCAGGCACAAGCGTCAGGGCTTTT
GACCCAGCGAATATACGCCGCAACCACTTGGGGTGTTCTCGTTCCAACAA
TTCTCGCACCAATAGTCTTCAGGCCAGTTTTTCGATGGAGAGAACGACGA
CTGGATCCTATGACAAGCAGTGAGACTTCTGATCACTCTAACCAAACGTC
AAGCTATGAGCAGAATGGTTGA