Gcaud1671.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1671.t1
Unique Name	Gcaud1671.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	548

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_860_length_16952_cov_4.432299	contig	NODE_860_length_16952_cov_4.432299:12978..14621 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.Q5IFN1
PFAMs	DNA_photolyase,FAD_binding_7
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K02295
KEGG Pathway	ko04710,map04710
Evalue	5.18e-142
EggNOG OGs	COG0415@1\|root,KOG0133@2759\|Eukaryota,37IU7@33090\|Viridiplantae,34J1H@3041\|Chlorophyta
Description	FAD binding domain of DNA photolyase
COG category	LT
BRITE	ko00000,ko00001,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1671	Gcaud1671	Gracilaria caudata M_176_S67 male	gene	NODE_860_length_16952_cov_4.432299 12978..14621 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1671.t1.stop1	Gcaud1671.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_860_length_16952_cov_4.432299 12978..12980 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1671.t1.CDS1	Gcaud1671.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_860_length_16952_cov_4.432299 12978..14621 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1671.t1.exon1	Gcaud1671.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_860_length_16952_cov_4.432299 12978..14621 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1671.t1.start1	Gcaud1671.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_860_length_16952_cov_4.432299 14619..14621 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1671.t1	Gcaud1671.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_860_length_16952_cov_4.432299 12978..14621 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_860_length_16952_cov_4.432299:12978..14621-
coding sequence from alignment at NODE_860_length_16952_cov_4.432299:12978..14621-

mRNA sequence

>Gcaud1671.t1 ID=Gcaud1671.t1|Name=Gcaud1671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=548bp
MKDAFSFAMVTESVLHWFRRDLRLSDNLALNAAIRLAKRTERPLIPLYVV
DPTLCPENCSAVRIKFLRESVCSLQQNLLKHDLHLRVISGNAHEVVPELA
RRWGVTSAFWEKEYAPQPRERDGLVLSELESLGIHVDSFPGFLLYDPDEL
LRRCDGHAPRNMNGMFRLVDEFGEPRQPKKFADGDAVNLVEDPFIKQDRE
ERMLEFPSFSDLGYHDLENRWEVFHGGEDAGLRRMNRFLRQEDGRIVADF
SKPKTNPASFSVRETTVLSPYLALGCVSCRVFHAGLREIEQRHELQEMRQ
TTLWGQLIWREHFWLLAYAVKNFHQIRGNVVCRQIDWREDKKSRKLLERW
AQAETGFPWIDALMTQLHKEGFVHHLGRHSLACFLTRGDLWVSWEEGFKV
FERYLVDYDYALNSANWMWLSCSAFFVMYYRVYSPIAFGKKWDKDGNFIR
HYLPVLKKMPSKYIYEPWKAPEAVQRKAGCVIGRDYPRPIVDHAKVSKEN
IEKMKANYAKGKFGSLEEDGVELGKSDGDENSLRSSFGSPRKKRRRH*

spliced messenger RNA

>Gcaud1671.t1 ID=Gcaud1671.t1|Name=Gcaud1671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:12978..14621- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGACGCCTTTTCTTTCGCAATGGTCACAGAAAGCGTTCTGCACTG
GTTTCGCAGAGATCTTCGTTTGTCTGATAATCTCGCTTTAAATGCAGCAA
TCAGACTTGCAAAGCGAACTGAGCGCCCACTGATACCCCTATATGTCGTG
GATCCAACTCTTTGTCCGGAGAACTGCAGCGCGGTTCGAATAAAATTCTT
GCGTGAATCGGTCTGTAGTCTGCAGCAAAACCTCCTGAAACATGATCTCC
ATCTACGGGTGATAAGTGGCAATGCGCACGAAGTTGTGCCAGAGCTCGCT
CGACGATGGGGAGTGACGAGTGCATTCTGGGAGAAAGAGTATGCTCCCCA
ACCCCGTGAGCGAGATGGTCTAGTACTATCAGAACTGGAGTCGCTAGGCA
TTCACGTGGATTCCTTTCCAGGATTTCTTCTCTACGACCCGGACGAACTT
CTTCGACGCTGTGATGGACATGCCCCAAGAAACATGAACGGTATGTTTCG
GCTTGTGGATGAGTTTGGAGAACCAAGGCAACCAAAGAAATTCGCCGATG
GGGACGCTGTAAACCTTGTCGAAGACCCTTTTATCAAGCAAGATAGAGAA
GAGCGCATGCTGGAATTCCCATCTTTCTCAGACCTTGGATATCACGATTT
GGAGAATCGATGGGAAGTGTTTCATGGTGGAGAGGACGCAGGTTTGCGGC
GAATGAATCGTTTCTTGCGACAGGAAGATGGTCGCATTGTAGCTGACTTT
TCGAAACCCAAAACAAACCCAGCCTCGTTTTCTGTCCGAGAAACCACCGT
GCTCTCTCCATATCTCGCGCTTGGATGCGTCAGTTGTCGTGTATTCCATG
CTGGACTCCGTGAGATTGAGCAACGTCACGAGTTGCAAGAGATGCGGCAG
ACCACATTGTGGGGTCAGCTCATATGGCGAGAACACTTCTGGTTGTTGGC
GTATGCAGTAAAGAACTTCCACCAAATACGAGGAAACGTCGTCTGCAGGC
AGATTGATTGGCGTGAGGACAAGAAATCAAGGAAGTTACTCGAACGCTGG
GCTCAAGCTGAAACCGGATTTCCATGGATTGACGCGTTGATGACTCAATT
GCATAAGGAGGGTTTCGTTCATCATTTAGGGAGACACAGTTTGGCTTGTT
TCCTGACCAGGGGCGACCTTTGGGTTAGTTGGGAAGAAGGATTCAAGGTC
TTCGAAAGGTATCTTGTGGATTATGACTACGCACTGAATTCGGCAAACTG
GATGTGGCTCAGCTGCAGCGCGTTTTTTGTTATGTACTATCGTGTTTACT
CACCCATTGCGTTCGGAAAGAAGTGGGACAAGGATGGTAACTTTATTCGC
CATTACCTACCTGTACTGAAAAAGATGCCATCAAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCAGTTCAAAGGAAAGCGGGCTGCGTTATTGGAA
GAGACTACCCAAGGCCAATCGTTGACCATGCCAAAGTAAGCAAGGAAAAC
ATAGAGAAGATGAAGGCGAATTATGCGAAAGGGAAGTTTGGCTCATTGGA
AGAAGACGGCGTAGAACTTGGAAAGTCAGACGGTGACGAAAACTCACTTC
GTTCGAGCTTCGGTTCTCCTCGAAAGAAAAGAAGGCGACATTGA

protein sequence of Gcaud1671.t1

>Gcaud1671.t1 ID=Gcaud1671.t1|Name=Gcaud1671.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=548bp
MKDAFSFAMVTESVLHWFRRDLRLSDNLALNAAIRLAKRTERPLIPLYVV
DPTLCPENCSAVRIKFLRESVCSLQQNLLKHDLHLRVISGNAHEVVPELA
RRWGVTSAFWEKEYAPQPRERDGLVLSELESLGIHVDSFPGFLLYDPDEL
LRRCDGHAPRNMNGMFRLVDEFGEPRQPKKFADGDAVNLVEDPFIKQDRE
ERMLEFPSFSDLGYHDLENRWEVFHGGEDAGLRRMNRFLRQEDGRIVADF
SKPKTNPASFSVRETTVLSPYLALGCVSCRVFHAGLREIEQRHELQEMRQ
TTLWGQLIWREHFWLLAYAVKNFHQIRGNVVCRQIDWREDKKSRKLLERW
AQAETGFPWIDALMTQLHKEGFVHHLGRHSLACFLTRGDLWVSWEEGFKV
FERYLVDYDYALNSANWMWLSCSAFFVMYYRVYSPIAFGKKWDKDGNFIR
HYLPVLKKMPSKYIYEPWKAPEAVQRKAGCVIGRDYPRPIVDHAKVSKEN
IEKMKANYAKGKFGSLEEDGVELGKSDGDENSLRSSFGSPRKKRRRH*

mRNA from alignment at NODE_860_length_16952_cov_4.432299:12978..14621-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1671.t1 ID=Gcaud1671.t1|Name=Gcaud1671.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:12978..14621- (Gracilaria caudata M_176_S67 male)
ATGAAAGACGCCTTTTCTTTCGCAATGGTCACAGAAAGCGTTCTGCACTG
GTTTCGCAGAGATCTTCGTTTGTCTGATAATCTCGCTTTAAATGCAGCAA
TCAGACTTGCAAAGCGAACTGAGCGCCCACTGATACCCCTATATGTCGTG
GATCCAACTCTTTGTCCGGAGAACTGCAGCGCGGTTCGAATAAAATTCTT
GCGTGAATCGGTCTGTAGTCTGCAGCAAAACCTCCTGAAACATGATCTCC
ATCTACGGGTGATAAGTGGCAATGCGCACGAAGTTGTGCCAGAGCTCGCT
CGACGATGGGGAGTGACGAGTGCATTCTGGGAGAAAGAGTATGCTCCCCA
ACCCCGTGAGCGAGATGGTCTAGTACTATCAGAACTGGAGTCGCTAGGCA
TTCACGTGGATTCCTTTCCAGGATTTCTTCTCTACGACCCGGACGAACTT
CTTCGACGCTGTGATGGACATGCCCCAAGAAACATGAACGGTATGTTTCG
GCTTGTGGATGAGTTTGGAGAACCAAGGCAACCAAAGAAATTCGCCGATG
GGGACGCTGTAAACCTTGTCGAAGACCCTTTTATCAAGCAAGATAGAGAA
GAGCGCATGCTGGAATTCCCATCTTTCTCAGACCTTGGATATCACGATTT
GGAGAATCGATGGGAAGTGTTTCATGGTGGAGAGGACGCAGGTTTGCGGC
GAATGAATCGTTTCTTGCGACAGGAAGATGGTCGCATTGTAGCTGACTTT
TCGAAACCCAAAACAAACCCAGCCTCGTTTTCTGTCCGAGAAACCACCGT
GCTCTCTCCATATCTCGCGCTTGGATGCGTCAGTTGTCGTGTATTCCATG
CTGGACTCCGTGAGATTGAGCAACGTCACGAGTTGCAAGAGATGCGGCAG
ACCACATTGTGGGGTCAGCTCATATGGCGAGAACACTTCTGGTTGTTGGC
GTATGCAGTAAAGAACTTCCACCAAATACGAGGAAACGTCGTCTGCAGGC
AGATTGATTGGCGTGAGGACAAGAAATCAAGGAAGTTACTCGAACGCTGG
GCTCAAGCTGAAACCGGATTTCCATGGATTGACGCGTTGATGACTCAATT
GCATAAGGAGGGTTTCGTTCATCATTTAGGGAGACACAGTTTGGCTTGTT
TCCTGACCAGGGGCGACCTTTGGGTTAGTTGGGAAGAAGGATTCAAGGTC
TTCGAAAGGTATCTTGTGGATTATGACTACGCACTGAATTCGGCAAACTG
GATGTGGCTCAGCTGCAGCGCGTTTTTTGTTATGTACTATCGTGTTTACT
CACCCATTGCGTTCGGAAAGAAGTGGGACAAGGATGGTAACTTTATTCGC
CATTACCTACCTGTACTGAAAAAGATGCCATCAAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCAGTTCAAAGGAAAGCGGGCTGCGTTATTGGAA
GAGACTACCCAAGGCCAATCGTTGACCATGCCAAAGTAAGCAAGGAAAAC
ATAGAGAAGATGAAGGCGAATTATGCGAAAGGGAAGTTTGGCTCATTGGA
AGAAGACGGCGTAGAACTTGGAAAGTCAGACGGTGACGAAAACTCACTTC
GTTCGAGCTTCGGTTCTCCTCGAAAGAAAAGAAGGCGACATTGA

Coding sequence (CDS) from alignment at NODE_860_length_16952_cov_4.432299:12978..14621-

>Gcaud1671.t1 ID=Gcaud1671.t1|Name=Gcaud1671.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1644bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:12978..14621- (Gracilaria caudata M_176_S67 male)
ATGAAAGACGCCTTTTCTTTCGCAATGGTCACAGAAAGCGTTCTGCACTG
GTTTCGCAGAGATCTTCGTTTGTCTGATAATCTCGCTTTAAATGCAGCAA
TCAGACTTGCAAAGCGAACTGAGCGCCCACTGATACCCCTATATGTCGTG
GATCCAACTCTTTGTCCGGAGAACTGCAGCGCGGTTCGAATAAAATTCTT
GCGTGAATCGGTCTGTAGTCTGCAGCAAAACCTCCTGAAACATGATCTCC
ATCTACGGGTGATAAGTGGCAATGCGCACGAAGTTGTGCCAGAGCTCGCT
CGACGATGGGGAGTGACGAGTGCATTCTGGGAGAAAGAGTATGCTCCCCA
ACCCCGTGAGCGAGATGGTCTAGTACTATCAGAACTGGAGTCGCTAGGCA
TTCACGTGGATTCCTTTCCAGGATTTCTTCTCTACGACCCGGACGAACTT
CTTCGACGCTGTGATGGACATGCCCCAAGAAACATGAACGGTATGTTTCG
GCTTGTGGATGAGTTTGGAGAACCAAGGCAACCAAAGAAATTCGCCGATG
GGGACGCTGTAAACCTTGTCGAAGACCCTTTTATCAAGCAAGATAGAGAA
GAGCGCATGCTGGAATTCCCATCTTTCTCAGACCTTGGATATCACGATTT
GGAGAATCGATGGGAAGTGTTTCATGGTGGAGAGGACGCAGGTTTGCGGC
GAATGAATCGTTTCTTGCGACAGGAAGATGGTCGCATTGTAGCTGACTTT
TCGAAACCCAAAACAAACCCAGCCTCGTTTTCTGTCCGAGAAACCACCGT
GCTCTCTCCATATCTCGCGCTTGGATGCGTCAGTTGTCGTGTATTCCATG
CTGGACTCCGTGAGATTGAGCAACGTCACGAGTTGCAAGAGATGCGGCAG
ACCACATTGTGGGGTCAGCTCATATGGCGAGAACACTTCTGGTTGTTGGC
GTATGCAGTAAAGAACTTCCACCAAATACGAGGAAACGTCGTCTGCAGGC
AGATTGATTGGCGTGAGGACAAGAAATCAAGGAAGTTACTCGAACGCTGG
GCTCAAGCTGAAACCGGATTTCCATGGATTGACGCGTTGATGACTCAATT
GCATAAGGAGGGTTTCGTTCATCATTTAGGGAGACACAGTTTGGCTTGTT
TCCTGACCAGGGGCGACCTTTGGGTTAGTTGGGAAGAAGGATTCAAGGTC
TTCGAAAGGTATCTTGTGGATTATGACTACGCACTGAATTCGGCAAACTG
GATGTGGCTCAGCTGCAGCGCGTTTTTTGTTATGTACTATCGTGTTTACT
CACCCATTGCGTTCGGAAAGAAGTGGGACAAGGATGGTAACTTTATTCGC
CATTACCTACCTGTACTGAAAAAGATGCCATCAAAATACATCTACGAGCC
ATGGAAAGCACCGGAAGCAGTTCAAAGGAAAGCGGGCTGCGTTATTGGAA
GAGACTACCCAAGGCCAATCGTTGACCATGCCAAAGTAAGCAAGGAAAAC
ATAGAGAAGATGAAGGCGAATTATGCGAAAGGGAAGTTTGGCTCATTGGA
AGAAGACGGCGTAGAACTTGGAAAGTCAGACGGTGACGAAAACTCACTTC
GTTCGAGCTTCGGTTCTCCTCGAAAGAAAAGAAGGCGACATTGA