Gcaud1670.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1670.t1
Unique Name	Gcaud1670.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	445

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_860_length_16952_cov_4.432299	contig	NODE_860_length_16952_cov_4.432299:10688..12022 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1670	Gcaud1670	Gracilaria caudata M_176_S67 male	gene	NODE_860_length_16952_cov_4.432299 10688..12022 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1670.t1.start1	Gcaud1670.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_860_length_16952_cov_4.432299 10688..10690 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1670.t1.CDS1	Gcaud1670.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_860_length_16952_cov_4.432299 10688..12022 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1670.t1.exon1	Gcaud1670.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_860_length_16952_cov_4.432299 10688..12022 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1670.t1.stop1	Gcaud1670.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_860_length_16952_cov_4.432299 12020..12022 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1670.t1	Gcaud1670.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_860_length_16952_cov_4.432299 10688..12022 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+
coding sequence from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+

mRNA sequence

>Gcaud1670.t1 ID=Gcaud1670.t1|Name=Gcaud1670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=445bp
MSNPNDFLNFEPSTDPLSELPSQGLLEYLNNASTQDGGLINVSGSGTGNA
PSLSPASNQMGLLPVHRPIPSPSGLNASDDFLELLKTNASQLGELQSQGA
EGVEDNGVASDASILTRSISEVTMDMLHRTPFANVAKHETDGSMSVPNGF
VGYGQPAQAPSTINAIQMVRQENLMPTPPLQQTANASQYGTANATAALTK
GLLMQEGKFFSLPFKPGHGGAGPEAQPAEVKLMKAAEPRTPQAIVQPPDD
VHGVAHAHPLPSGLPSGTLQAAKQNNGDKLLPGVPAKRSRGGAVVRRVLK
RMGKSNSDVPSLLSSVCDEQTKSSSTEVKHQFDAEEKRGKKRKIENAENE
EELKKLRRVRNRESVEKCRAKQRIRLEKLEEEDRALRSECEIMRQMAEVF
QEKWKQVAEEYHKICGKEAGECPMVIPPNTTLPEAATLSAAERS*

spliced messenger RNA

>Gcaud1670.t1 ID=Gcaud1670.t1|Name=Gcaud1670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACCCGAACGATTTCTTGAACTTTGAACCTTCTACCGACCCCCT
ATCCGAACTGCCGAGCCAGGGTTTGTTGGAGTATCTAAACAATGCTTCGA
CGCAAGATGGGGGGCTTATCAACGTTTCTGGCAGCGGAACTGGCAATGCA
CCATCTCTATCGCCCGCTTCGAATCAAATGGGGTTGCTTCCTGTTCATCG
TCCAATCCCATCGCCTTCTGGGTTGAACGCTTCAGATGACTTTCTCGAGT
TGCTGAAGACGAATGCAAGCCAATTGGGCGAGCTTCAAAGTCAAGGCGCG
GAAGGTGTTGAAGACAACGGTGTTGCGTCTGATGCATCGATTCTCACCCG
CAGCATTTCGGAGGTGACAATGGATATGCTACATCGCACTCCTTTTGCGA
ACGTAGCAAAGCATGAAACTGATGGCTCCATGTCAGTTCCAAACGGGTTT
GTCGGCTATGGCCAGCCAGCTCAGGCGCCATCGACCATCAACGCAATCCA
GATGGTACGTCAAGAAAACTTGATGCCGACCCCTCCGCTACAGCAAACAG
CCAACGCATCCCAGTATGGGACAGCCAACGCGACGGCTGCACTAACGAAG
GGGCTTTTGATGCAAGAGGGCAAGTTCTTCTCTCTTCCCTTCAAACCTGG
TCATGGAGGCGCTGGTCCCGAAGCGCAACCTGCGGAGGTGAAGCTGATGA
AGGCAGCTGAACCAAGAACTCCGCAGGCAATCGTTCAGCCACCCGACGAC
GTTCACGGAGTGGCTCATGCTCATCCCCTTCCTTCTGGGCTTCCGAGCGG
TACATTGCAAGCCGCGAAGCAAAACAATGGGGATAAGCTTCTTCCAGGAG
TTCCCGCGAAAAGATCCCGGGGTGGAGCAGTAGTGCGACGGGTCTTGAAG
CGAATGGGAAAAAGCAATTCCGACGTCCCATCTTTGCTCTCTAGTGTCTG
TGACGAGCAAACGAAGTCGAGCTCCACAGAGGTCAAGCATCAGTTTGACG
CTGAAGAAAAAAGGGGCAAGAAAAGGAAGATCGAGAATGCTGAAAATGAG
GAAGAGCTTAAAAAGCTCAGACGGGTACGGAACCGGGAGAGCGTGGAGAA
GTGCCGGGCGAAGCAGAGGATAAGGCTGGAAAAATTGGAAGAAGAAGATA
GGGCGCTGAGATCGGAATGCGAAATCATGCGTCAAATGGCAGAAGTGTTC
CAGGAGAAATGGAAGCAGGTCGCCGAAGAGTATCACAAAATCTGTGGGAA
AGAAGCCGGTGAATGCCCCATGGTCATCCCACCAAACACAACACTGCCCG
AGGCAGCAACATTGTCTGCCGCCGAGAGAAGTTAG

protein sequence of Gcaud1670.t1

>Gcaud1670.t1 ID=Gcaud1670.t1|Name=Gcaud1670.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MSNPNDFLNFEPSTDPLSELPSQGLLEYLNNASTQDGGLINVSGSGTGNA
PSLSPASNQMGLLPVHRPIPSPSGLNASDDFLELLKTNASQLGELQSQGA
EGVEDNGVASDASILTRSISEVTMDMLHRTPFANVAKHETDGSMSVPNGF
VGYGQPAQAPSTINAIQMVRQENLMPTPPLQQTANASQYGTANATAALTK
GLLMQEGKFFSLPFKPGHGGAGPEAQPAEVKLMKAAEPRTPQAIVQPPDD
VHGVAHAHPLPSGLPSGTLQAAKQNNGDKLLPGVPAKRSRGGAVVRRVLK
RMGKSNSDVPSLLSSVCDEQTKSSSTEVKHQFDAEEKRGKKRKIENAENE
EELKKLRRVRNRESVEKCRAKQRIRLEKLEEEDRALRSECEIMRQMAEVF
QEKWKQVAEEYHKICGKEAGECPMVIPPNTTLPEAATLSAAERS*

mRNA from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1670.t1 ID=Gcaud1670.t1|Name=Gcaud1670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+ (Gracilaria caudata M_176_S67 male)
ATGAGCAACCCGAACGATTTCTTGAACTTTGAACCTTCTACCGACCCCCT
ATCCGAACTGCCGAGCCAGGGTTTGTTGGAGTATCTAAACAATGCTTCGA
CGCAAGATGGGGGGCTTATCAACGTTTCTGGCAGCGGAACTGGCAATGCA
CCATCTCTATCGCCCGCTTCGAATCAAATGGGGTTGCTTCCTGTTCATCG
TCCAATCCCATCGCCTTCTGGGTTGAACGCTTCAGATGACTTTCTCGAGT
TGCTGAAGACGAATGCAAGCCAATTGGGCGAGCTTCAAAGTCAAGGCGCG
GAAGGTGTTGAAGACAACGGTGTTGCGTCTGATGCATCGATTCTCACCCG
CAGCATTTCGGAGGTGACAATGGATATGCTACATCGCACTCCTTTTGCGA
ACGTAGCAAAGCATGAAACTGATGGCTCCATGTCAGTTCCAAACGGGTTT
GTCGGCTATGGCCAGCCAGCTCAGGCGCCATCGACCATCAACGCAATCCA
GATGGTACGTCAAGAAAACTTGATGCCGACCCCTCCGCTACAGCAAACAG
CCAACGCATCCCAGTATGGGACAGCCAACGCGACGGCTGCACTAACGAAG
GGGCTTTTGATGCAAGAGGGCAAGTTCTTCTCTCTTCCCTTCAAACCTGG
TCATGGAGGCGCTGGTCCCGAAGCGCAACCTGCGGAGGTGAAGCTGATGA
AGGCAGCTGAACCAAGAACTCCGCAGGCAATCGTTCAGCCACCCGACGAC
GTTCACGGAGTGGCTCATGCTCATCCCCTTCCTTCTGGGCTTCCGAGCGG
TACATTGCAAGCCGCGAAGCAAAACAATGGGGATAAGCTTCTTCCAGGAG
TTCCCGCGAAAAGATCCCGGGGTGGAGCAGTAGTGCGACGGGTCTTGAAG
CGAATGGGAAAAAGCAATTCCGACGTCCCATCTTTGCTCTCTAGTGTCTG
TGACGAGCAAACGAAGTCGAGCTCCACAGAGGTCAAGCATCAGTTTGACG
CTGAAGAAAAAAGGGGCAAGAAAAGGAAGATCGAGAATGCTGAAAATGAG
GAAGAGCTTAAAAAGCTCAGACGGGTACGGAACCGGGAGAGCGTGGAGAA
GTGCCGGGCGAAGCAGAGGATAAGGCTGGAAAAATTGGAAGAAGAAGATA
GGGCGCTGAGATCGGAATGCGAAATCATGCGTCAAATGGCAGAAGTGTTC
CAGGAGAAATGGAAGCAGGTCGCCGAAGAGTATCACAAAATCTGTGGGAA
AGAAGCCGGTGAATGCCCCATGGTCATCCCACCAAACACAACACTGCCCG
AGGCAGCAACATTGTCTGCCGCCGAGAGAAGTTAG

Coding sequence (CDS) from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+

>Gcaud1670.t1 ID=Gcaud1670.t1|Name=Gcaud1670.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1335bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:10688..12022+ (Gracilaria caudata M_176_S67 male)
ATGAGCAACCCGAACGATTTCTTGAACTTTGAACCTTCTACCGACCCCCT
ATCCGAACTGCCGAGCCAGGGTTTGTTGGAGTATCTAAACAATGCTTCGA
CGCAAGATGGGGGGCTTATCAACGTTTCTGGCAGCGGAACTGGCAATGCA
CCATCTCTATCGCCCGCTTCGAATCAAATGGGGTTGCTTCCTGTTCATCG
TCCAATCCCATCGCCTTCTGGGTTGAACGCTTCAGATGACTTTCTCGAGT
TGCTGAAGACGAATGCAAGCCAATTGGGCGAGCTTCAAAGTCAAGGCGCG
GAAGGTGTTGAAGACAACGGTGTTGCGTCTGATGCATCGATTCTCACCCG
CAGCATTTCGGAGGTGACAATGGATATGCTACATCGCACTCCTTTTGCGA
ACGTAGCAAAGCATGAAACTGATGGCTCCATGTCAGTTCCAAACGGGTTT
GTCGGCTATGGCCAGCCAGCTCAGGCGCCATCGACCATCAACGCAATCCA
GATGGTACGTCAAGAAAACTTGATGCCGACCCCTCCGCTACAGCAAACAG
CCAACGCATCCCAGTATGGGACAGCCAACGCGACGGCTGCACTAACGAAG
GGGCTTTTGATGCAAGAGGGCAAGTTCTTCTCTCTTCCCTTCAAACCTGG
TCATGGAGGCGCTGGTCCCGAAGCGCAACCTGCGGAGGTGAAGCTGATGA
AGGCAGCTGAACCAAGAACTCCGCAGGCAATCGTTCAGCCACCCGACGAC
GTTCACGGAGTGGCTCATGCTCATCCCCTTCCTTCTGGGCTTCCGAGCGG
TACATTGCAAGCCGCGAAGCAAAACAATGGGGATAAGCTTCTTCCAGGAG
TTCCCGCGAAAAGATCCCGGGGTGGAGCAGTAGTGCGACGGGTCTTGAAG
CGAATGGGAAAAAGCAATTCCGACGTCCCATCTTTGCTCTCTAGTGTCTG
TGACGAGCAAACGAAGTCGAGCTCCACAGAGGTCAAGCATCAGTTTGACG
CTGAAGAAAAAAGGGGCAAGAAAAGGAAGATCGAGAATGCTGAAAATGAG
GAAGAGCTTAAAAAGCTCAGACGGGTACGGAACCGGGAGAGCGTGGAGAA
GTGCCGGGCGAAGCAGAGGATAAGGCTGGAAAAATTGGAAGAAGAAGATA
GGGCGCTGAGATCGGAATGCGAAATCATGCGTCAAATGGCAGAAGTGTTC
CAGGAGAAATGGAAGCAGGTCGCCGAAGAGTATCACAAAATCTGTGGGAA
AGAAGCCGGTGAATGCCCCATGGTCATCCCACCAAACACAACACTGCCCG
AGGCAGCAACATTGTCTGCCGCCGAGAGAAGTTAG