Gcaud1668.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1668.t1
Unique Name	Gcaud1668.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_860_length_16952_cov_4.432299	contig	NODE_860_length_16952_cov_4.432299:2013..2911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1668	Gcaud1668	Gracilaria caudata M_176_S67 male	gene	NODE_860_length_16952_cov_4.432299 2013..2911 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1	Gcaud1668.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_860_length_16952_cov_4.432299 2013..2911 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1.start1	Gcaud1668.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_860_length_16952_cov_4.432299 2013..2015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1.CDS1	Gcaud1668.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_860_length_16952_cov_4.432299 2013..2836 +
Gcaud1668.t1.CDS2	Gcaud1668.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_860_length_16952_cov_4.432299 2902..2911 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1.exon1	Gcaud1668.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_860_length_16952_cov_4.432299 2013..2836 +
Gcaud1668.t1.exon2	Gcaud1668.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_860_length_16952_cov_4.432299 2902..2911 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1.intron1	Gcaud1668.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_860_length_16952_cov_4.432299 2837..2901 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1668.t1.stop1	Gcaud1668.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_860_length_16952_cov_4.432299 2909..2911 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+
coding sequence from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+

mRNA sequence

>Gcaud1668.t1 ID=Gcaud1668.t1|Name=Gcaud1668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=278bp
MERFRKDGVRVDLGTVIITFCANSDGSIPEHRMEGDVVVVECWVVDGRHR
IRALKELSKKSEHWKRVAESLRVSVYSKKDGTVLSKLEIIGSGGIMNQHA
SAVLPMSTMDRLHACVSTAKTLVCEKSVQLDTLTAKQFAGVLQKMRALGE
MRGTQLTRYARGGLRMAKDSEVYLIVSEGLKKCDSLGIVHLSSGMLWDLP
VEGVRLAVEFVVERLEIAKSGRNPMEVPFDKMRASFYKNVQMLYKQVAET
AEHQNISVSEMLSRAVDSTASKKLLDL*

spliced messenger RNA

>Gcaud1668.t1 ID=Gcaud1668.t1|Name=Gcaud1668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=834bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGATTTCGGAAAGACGGAGTGCGAGTGGACTTGGGGACGGTCAT
CATTACGTTCTGTGCAAACAGCGATGGAAGTATCCCAGAGCACCGGATGG
AGGGCGATGTTGTAGTAGTTGAGTGCTGGGTAGTGGACGGACGGCACCGC
ATTCGCGCATTGAAGGAGCTGTCAAAGAAATCTGAGCATTGGAAAAGAGT
GGCAGAGTCCCTGCGCGTTTCAGTATATTCCAAAAAGGACGGAACAGTAT
TGAGCAAGTTGGAAATAATTGGCTCAGGAGGTATAATGAATCAACATGCC
TCGGCAGTTTTGCCAATGAGCACTATGGACCGGCTACATGCGTGCGTGTC
GACTGCCAAGACCCTTGTTTGTGAGAAGAGTGTGCAATTGGATACCTTGA
CGGCTAAACAGTTTGCTGGCGTATTGCAGAAGATGAGAGCACTAGGAGAG
ATGCGCGGTACTCAGTTAACAAGATATGCCCGTGGTGGCTTGAGAATGGC
GAAGGATTCTGAGGTTTATCTCATTGTGAGTGAGGGGCTGAAGAAGTGCG
ATAGCCTAGGAATCGTTCACTTATCAAGCGGTATGCTTTGGGATTTGCCA
GTGGAAGGTGTGCGCCTGGCAGTTGAATTTGTAGTAGAGCGATTGGAGAT
TGCGAAAAGTGGAAGAAATCCAATGGAAGTTCCATTCGATAAGATGAGGG
CTTCTTTCTATAAGAATGTACAAATGCTGTACAAACAAGTCGCAGAAACG
GCAGAGCATCAGAACATATCCGTATCGGAGATGTTATCGAGAGCGGTGGA
CTCGACAGCTTCGAAGAAATTACTcgatctctga

protein sequence of Gcaud1668.t1

>Gcaud1668.t1 ID=Gcaud1668.t1|Name=Gcaud1668.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=278bp
MERFRKDGVRVDLGTVIITFCANSDGSIPEHRMEGDVVVVECWVVDGRHR
IRALKELSKKSEHWKRVAESLRVSVYSKKDGTVLSKLEIIGSGGIMNQHA
SAVLPMSTMDRLHACVSTAKTLVCEKSVQLDTLTAKQFAGVLQKMRALGE
MRGTQLTRYARGGLRMAKDSEVYLIVSEGLKKCDSLGIVHLSSGMLWDLP
VEGVRLAVEFVVERLEIAKSGRNPMEVPFDKMRASFYKNVQMLYKQVAET
AEHQNISVSEMLSRAVDSTASKKLLDL*

mRNA from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1668.t1 ID=Gcaud1668.t1|Name=Gcaud1668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=899bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGATTTCGGAAAGACGGAGTGCGAGTGGACTTGGGGACGGTCAT
CATTACGTTCTGTGCAAACAGCGATGGAAGTATCCCAGAGCACCGGATGG
AGGGCGATGTTGTAGTAGTTGAGTGCTGGGTAGTGGACGGACGGCACCGC
ATTCGCGCATTGAAGGAGCTGTCAAAGAAATCTGAGCATTGGAAAAGAGT
GGCAGAGTCCCTGCGCGTTTCAGTATATTCCAAAAAGGACGGAACAGTAT
TGAGCAAGTTGGAAATAATTGGCTCAGGAGGTATAATGAATCAACATGCC
TCGGCAGTTTTGCCAATGAGCACTATGGACCGGCTACATGCGTGCGTGTC
GACTGCCAAGACCCTTGTTTGTGAGAAGAGTGTGCAATTGGATACCTTGA
CGGCTAAACAGTTTGCTGGCGTATTGCAGAAGATGAGAGCACTAGGAGAG
ATGCGCGGTACTCAGTTAACAAGATATGCCCGTGGTGGCTTGAGAATGGC
GAAGGATTCTGAGGTTTATCTCATTGTGAGTGAGGGGCTGAAGAAGTGCG
ATAGCCTAGGAATCGTTCACTTATCAAGCGGTATGCTTTGGGATTTGCCA
GTGGAAGGTGTGCGCCTGGCAGTTGAATTTGTAGTAGAGCGATTGGAGAT
TGCGAAAAGTGGAAGAAATCCAATGGAAGTTCCATTCGATAAGATGAGGG
CTTCTTTCTATAAGAATGTACAAATGCTGTACAAACAAGTCGCAGAAACG
GCAGAGCATCAGAACATATCCGTATCGGAGATGTTATCGAGAGCGGTGGA
CTCGACAGCTTCGAAGAAATTACTGTTGCAAGAGAGTATTGTGTCTCAAC
TAGGTCTCTTCAAGTATAatcctaatccgaatttggcagcgatctctga

Coding sequence (CDS) from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+

>Gcaud1668.t1 ID=Gcaud1668.t1|Name=Gcaud1668.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=834bp|location=Sequence derived from alignment at NODE_860_length_16952_cov_4.432299:2013..2911+ (Gracilaria caudata M_176_S67 male)
ATGGAAAGATTTCGGAAAGACGGAGTGCGAGTGGACTTGGGGACGGTCAT
CATTACGTTCTGTGCAAACAGCGATGGAAGTATCCCAGAGCACCGGATGG
AGGGCGATGTTGTAGTAGTTGAGTGCTGGGTAGTGGACGGACGGCACCGC
ATTCGCGCATTGAAGGAGCTGTCAAAGAAATCTGAGCATTGGAAAAGAGT
GGCAGAGTCCCTGCGCGTTTCAGTATATTCCAAAAAGGACGGAACAGTAT
TGAGCAAGTTGGAAATAATTGGCTCAGGAGGTATAATGAATCAACATGCC
TCGGCAGTTTTGCCAATGAGCACTATGGACCGGCTACATGCGTGCGTGTC
GACTGCCAAGACCCTTGTTTGTGAGAAGAGTGTGCAATTGGATACCTTGA
CGGCTAAACAGTTTGCTGGCGTATTGCAGAAGATGAGAGCACTAGGAGAG
ATGCGCGGTACTCAGTTAACAAGATATGCCCGTGGTGGCTTGAGAATGGC
GAAGGATTCTGAGGTTTATCTCATTGTGAGTGAGGGGCTGAAGAAGTGCG
ATAGCCTAGGAATCGTTCACTTATCAAGCGGTATGCTTTGGGATTTGCCA
GTGGAAGGTGTGCGCCTGGCAGTTGAATTTGTAGTAGAGCGATTGGAGAT
TGCGAAAAGTGGAAGAAATCCAATGGAAGTTCCATTCGATAAGATGAGGG
CTTCTTTCTATAAGAATGTACAAATGCTGTACAAACAAGTCGCAGAAACG
GCAGAGCATCAGAACATATCCGTATCGGAGATGTTATCGAGAGCGGTGGA
CTCGACAGCTTCGAAGAAATTACTcgatctctga