Gcaud1667.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1667.t1
Unique Name	Gcaud1667.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_866_length_16874_cov_4.313174	contig	NODE_866_length_16874_cov_4.313174:13551..14633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	234267.Acid_4441
PFAMs	Glyco_hydro_43
Max annot lvl	57723\|Acidobacteria
KEGG ko	ko:K06113
Evalue	3.21e-47
EggNOG OGs	COG3507@1\|root,COG3507@2\|Bacteria,3Y75H@57723\|Acidobacteria
EC	3.2.1.99
Description	Glycosyl hydrolases family 43
COG category	G
CAZy	GH43
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1667	Gcaud1667	Gracilaria caudata M_176_S67 male	gene	NODE_866_length_16874_cov_4.313174 13551..14633 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1667.t1.start1	Gcaud1667.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_866_length_16874_cov_4.313174 13551..13553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1667.t1.CDS1	Gcaud1667.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_866_length_16874_cov_4.313174 13551..14633 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1667.t1.exon1	Gcaud1667.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_866_length_16874_cov_4.313174 13551..14633 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1667.t1.stop1	Gcaud1667.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_866_length_16874_cov_4.313174 14631..14633 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1667.t1	Gcaud1667.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_866_length_16874_cov_4.313174 13551..14633 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+
coding sequence from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+

mRNA sequence

>Gcaud1667.t1 ID=Gcaud1667.t1|Name=Gcaud1667.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MDSSKLNCLSLLSLVLFLIFHTVSAADEALDQHYTNLDIPVQQDDYIIHD
PSRIVTKRGYQMIAVTGKAQEDGYQCGLETWYRPIDTQRWQPGQCLFKDK
PSWVIDIIEEQDGAYWAPELVKPRVMVYSVADYTDQSSYTCVGLARATGT
FPNKMTWKDSGKPLSCVNKEDFDEEVSAIDPSILTADDGTTYLITGGGII
HGTELNELYRPVSGNWFSPDAEGWTMLARGPETEDGYGWIEAPYAYYHNG
WYYLFVNWGACCSRADSTYNVRVGRSRDPLGPYLDKEGVDLLYGGGSLFL
ESERYMIGPGHVGIRKDSEQFIVSFHYYDARRGGASWIAERRMFWSGSGW
PRLGKVLSRW*

spliced messenger RNA

>Gcaud1667.t1 ID=Gcaud1667.t1|Name=Gcaud1667.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCCAGCAAGCTTAACTGCTTGTCACTCCTTTCGCTCGTCCTTTT
CCTAATTTTCCATACCGTTAGTGCAGCCGATGAGGCTCTGGATCAGCATT
ACACCAACCTCGACATTCCTGTTCAACAAGATGATTACATCATTCACGAC
CCTTCCAGAATCGTAACCAAAAGAGGATACCAAATGATTGCAGTCACAGG
CAAGGCTCAGGAGGACGGATACCAGTGTGGGCTCGAAACATGGTATAGGC
CAATTGATACACAACGCTGGCAGCCTGGTCAATGCTTGTTCAAGGATAAG
CCATCATGGGTTATCGATATTATCGAGGAGCAAGATGGTGCTTACTGGGC
TCCCGAGCTCGTGAAACCAAGAGTCATGGTCTATAGCGTTGCCGATTATA
CAGACCAATCATCTTACACTTGCGTCGGTCTTGCCCGAGCCACCGGTACT
TTTCCCAACAAGATGACCTGGAAAGACTCTGGAAAACCCCTCTCCTGTGT
AAACAAAGAAGATTTTGATGAGGAAGTCAGCGCCATTGATCCCTCTATAT
TGACGGCTGATGATGGAACTACGTATCTCATTACTGGTGGCGGCATTATA
CATGGAACAGAGCTAAACGAACTTTATCGCCCGGTGTCTGGTAATTGGTT
TAGCCCTGACGCTGAAGGCTGGACAATGCTCGCAAGAGGTCCTGAGACTG
AAGACGGCTATGGCTGGATTGAAGCCCCTTACGCTTATTACCACAATGGT
TGGTACTATTTGTTTGTGAATTGGGGCGCGTGTTGCAGTAGAGCCGATTC
CACTTATAACGTTCGCGTGGGGCGCTCGAGAGACCCTCTGGGGCCTTACC
TGGACAAAGAAGGAGTGGACTTGCTTTACGGAGGAGGCTCTCTGTTCCTT
GAGTCTGAGAGATACATGATCGGTCCGGGACACGTCGGAATTAGAAAAGA
TTCTGAGCAGTTCATAGTTAGCTTCCACTATTACGATGCTCGCCGTGGGG
GTGCATCATGGATTGCTGAGAGGCGCATGTTCTGGTCCGGATCAGGGTGG
CCGAGGCTTGGAAAGGTGCTGAGTCGCTGGTAA

protein sequence of Gcaud1667.t1

>Gcaud1667.t1 ID=Gcaud1667.t1|Name=Gcaud1667.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MDSSKLNCLSLLSLVLFLIFHTVSAADEALDQHYTNLDIPVQQDDYIIHD
PSRIVTKRGYQMIAVTGKAQEDGYQCGLETWYRPIDTQRWQPGQCLFKDK
PSWVIDIIEEQDGAYWAPELVKPRVMVYSVADYTDQSSYTCVGLARATGT
FPNKMTWKDSGKPLSCVNKEDFDEEVSAIDPSILTADDGTTYLITGGGII
HGTELNELYRPVSGNWFSPDAEGWTMLARGPETEDGYGWIEAPYAYYHNG
WYYLFVNWGACCSRADSTYNVRVGRSRDPLGPYLDKEGVDLLYGGGSLFL
ESERYMIGPGHVGIRKDSEQFIVSFHYYDARRGGASWIAERRMFWSGSGW
PRLGKVLSRW*

mRNA from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1667.t1 ID=Gcaud1667.t1|Name=Gcaud1667.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+ (Gracilaria caudata M_176_S67 male)
ATGGACTCCAGCAAGCTTAACTGCTTGTCACTCCTTTCGCTCGTCCTTTT
CCTAATTTTCCATACCGTTAGTGCAGCCGATGAGGCTCTGGATCAGCATT
ACACCAACCTCGACATTCCTGTTCAACAAGATGATTACATCATTCACGAC
CCTTCCAGAATCGTAACCAAAAGAGGATACCAAATGATTGCAGTCACAGG
CAAGGCTCAGGAGGACGGATACCAGTGTGGGCTCGAAACATGGTATAGGC
CAATTGATACACAACGCTGGCAGCCTGGTCAATGCTTGTTCAAGGATAAG
CCATCATGGGTTATCGATATTATCGAGGAGCAAGATGGTGCTTACTGGGC
TCCCGAGCTCGTGAAACCAAGAGTCATGGTCTATAGCGTTGCCGATTATA
CAGACCAATCATCTTACACTTGCGTCGGTCTTGCCCGAGCCACCGGTACT
TTTCCCAACAAGATGACCTGGAAAGACTCTGGAAAACCCCTCTCCTGTGT
AAACAAAGAAGATTTTGATGAGGAAGTCAGCGCCATTGATCCCTCTATAT
TGACGGCTGATGATGGAACTACGTATCTCATTACTGGTGGCGGCATTATA
CATGGAACAGAGCTAAACGAACTTTATCGCCCGGTGTCTGGTAATTGGTT
TAGCCCTGACGCTGAAGGCTGGACAATGCTCGCAAGAGGTCCTGAGACTG
AAGACGGCTATGGCTGGATTGAAGCCCCTTACGCTTATTACCACAATGGT
TGGTACTATTTGTTTGTGAATTGGGGCGCGTGTTGCAGTAGAGCCGATTC
CACTTATAACGTTCGCGTGGGGCGCTCGAGAGACCCTCTGGGGCCTTACC
TGGACAAAGAAGGAGTGGACTTGCTTTACGGAGGAGGCTCTCTGTTCCTT
GAGTCTGAGAGATACATGATCGGTCCGGGACACGTCGGAATTAGAAAAGA
TTCTGAGCAGTTCATAGTTAGCTTCCACTATTACGATGCTCGCCGTGGGG
GTGCATCATGGATTGCTGAGAGGCGCATGTTCTGGTCCGGATCAGGGTGG
CCGAGGCTTGGAAAGGTGCTGAGTCGCTGGTAA

Coding sequence (CDS) from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+

>Gcaud1667.t1 ID=Gcaud1667.t1|Name=Gcaud1667.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_866_length_16874_cov_4.313174:13551..14633+ (Gracilaria caudata M_176_S67 male)
ATGGACTCCAGCAAGCTTAACTGCTTGTCACTCCTTTCGCTCGTCCTTTT
CCTAATTTTCCATACCGTTAGTGCAGCCGATGAGGCTCTGGATCAGCATT
ACACCAACCTCGACATTCCTGTTCAACAAGATGATTACATCATTCACGAC
CCTTCCAGAATCGTAACCAAAAGAGGATACCAAATGATTGCAGTCACAGG
CAAGGCTCAGGAGGACGGATACCAGTGTGGGCTCGAAACATGGTATAGGC
CAATTGATACACAACGCTGGCAGCCTGGTCAATGCTTGTTCAAGGATAAG
CCATCATGGGTTATCGATATTATCGAGGAGCAAGATGGTGCTTACTGGGC
TCCCGAGCTCGTGAAACCAAGAGTCATGGTCTATAGCGTTGCCGATTATA
CAGACCAATCATCTTACACTTGCGTCGGTCTTGCCCGAGCCACCGGTACT
TTTCCCAACAAGATGACCTGGAAAGACTCTGGAAAACCCCTCTCCTGTGT
AAACAAAGAAGATTTTGATGAGGAAGTCAGCGCCATTGATCCCTCTATAT
TGACGGCTGATGATGGAACTACGTATCTCATTACTGGTGGCGGCATTATA
CATGGAACAGAGCTAAACGAACTTTATCGCCCGGTGTCTGGTAATTGGTT
TAGCCCTGACGCTGAAGGCTGGACAATGCTCGCAAGAGGTCCTGAGACTG
AAGACGGCTATGGCTGGATTGAAGCCCCTTACGCTTATTACCACAATGGT
TGGTACTATTTGTTTGTGAATTGGGGCGCGTGTTGCAGTAGAGCCGATTC
CACTTATAACGTTCGCGTGGGGCGCTCGAGAGACCCTCTGGGGCCTTACC
TGGACAAAGAAGGAGTGGACTTGCTTTACGGAGGAGGCTCTCTGTTCCTT
GAGTCTGAGAGATACATGATCGGTCCGGGACACGTCGGAATTAGAAAAGA
TTCTGAGCAGTTCATAGTTAGCTTCCACTATTACGATGCTCGCCGTGGGG
GTGCATCATGGATTGCTGAGAGGCGCATGTTCTGGTCCGGATCAGGGTGG
CCGAGGCTTGGAAAGGTGCTGAGTCGCTGGTAA